PHD zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 3 cut(s) | 16, 52, 98 |
| AcuI | CTGAAG | 1 cut(s) | 819 |
| AfaI | GTAC | 2 cut(s) | 89, 300 |
| AgsI | TTSAA | 8 cut(s) | 21, 103, 137, 377, 437, 851, 857, 938 |
| AluBI | AGCT | 8 cut(s) | 112, 151, 191, 206, 288, 397, 715, 839 |
| AluI | AGCT | 8 cut(s) | 112, 151, 191, 206, 288, 397, 715, 839 |
| Alw21I | GWGCWC | 1 cut(s) | 352 |
| Alw26I | GTCTC | 3 cut(s) | 474, 482, 792 |
| Alw44I | GTGCAC | 1 cut(s) | 348 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 30 |
| ApaLI | GTGCAC | 1 cut(s) | 348 |
| ApoI | RAATTY | 3 cut(s) | 16, 52, 98 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 846 |
| AspLEI | GCGC | 1 cut(s) | 821 |
| AsuC2I | CCSGG | 2 cut(s) | 345, 354 |
| AsuHPI | GGTGA | 2 cut(s) | 179, 765 |
| BaeGI | GKGCMC | 1 cut(s) | 352 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 450, 483 |
| BauI | CACGAG | 1 cut(s) | 585 |
| Bbv12I | GWGCWC | 1 cut(s) | 352 |
| BccI | CCATC | 5 cut(s) | 178, 448, 497, 641, 728 |
| BcnI | CCSGG | 2 cut(s) | 345, 354 |
| BcoDI | GTCTC | 3 cut(s) | 474, 482, 792 |
| BfaI | CTAG | 2 cut(s) | 203, 729 |
| BfmI | CTRYAG | 1 cut(s) | 669 |
| BglII | AGATCT | 1 cut(s) | 547 |
| BmcAI | AGTACT | 1 cut(s) | 89 |
| Bme1390I | CCNGG | 2 cut(s) | 345, 354 |
| BmiI | GGNNCC | 3 cut(s) | 9, 144, 943 |
| BmrFI | CCNGG | 2 cut(s) | 345, 354 |
| BmrI | ACTGGG | 1 cut(s) | 57 |
| BmsI | GCATC | 2 cut(s) | 188, 781 |
| BmuI | ACTGGG | 1 cut(s) | 57 |
| BoxI | GACNNNNGTC | 1 cut(s) | 907 |
| BpmI | CTGGAG | 1 cut(s) | 816 |
| Bpu10I | CCTNAGC | 1 cut(s) | 147 |
| BpuEI | CTTGAG | 1 cut(s) | 447 |
| BpuMI | CCSGG | 2 cut(s) | 345, 354 |
| Bse1I | ACTGG | 2 cut(s) | 52, 74 |
| BseGI | GGATG | 2 cut(s) | 123, 544 |
| BseMII | CTCAG | 3 cut(s) | 99, 273, 485 |
| BseNI | ACTGG | 2 cut(s) | 52, 74 |
| BseRI | GAGGAG | 1 cut(s) | 519 |
| BseSI | GKGCMC | 1 cut(s) | 352 |
| BsiHKAI | GWGCWC | 1 cut(s) | 352 |
| BsiSI | CCGG | 3 cut(s) | 344, 353, 621 |
| BsmAI | GTCTC | 3 cut(s) | 474, 482, 792 |
| Bsp1286I | GDGCHC | 1 cut(s) | 352 |
| Bsp143I | GATC | 3 cut(s) | 34, 264, 547 |
| BspCNI | CTCAG | 3 cut(s) | 100, 274, 486 |
| BspLI | GGNNCC | 3 cut(s) | 9, 144, 943 |
| BsrI | ACTGG | 2 cut(s) | 52, 74 |
| BssMI | GATC | 3 cut(s) | 34, 264, 547 |
| BssSI | CACGAG | 1 cut(s) | 585 |
| Bst2BI | CACGAG | 1 cut(s) | 585 |
| Bst4CI | ACNGT | 2 cut(s) | 26, 327 |
| Bst6I | CTCTTC | 2 cut(s) | 480, 561 |
| BstDEI | CTNAG | 6 cut(s) | 108, 147, 282, 313, 494, 899 |
| BstF5I | GGATG | 2 cut(s) | 123, 544 |
| BstHHI | GCGC | 1 cut(s) | 821 |
| BstKTI | GATC | 3 cut(s) | 37, 267, 550 |
| BstMAI | GTCTC | 3 cut(s) | 474, 482, 792 |
| BstMBI | GATC | 3 cut(s) | 34, 264, 547 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 816 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 907 |
| BstSCI | CCNGG | 2 cut(s) | 343, 352 |
| BstSFI | CTRYAG | 1 cut(s) | 669 |
| BstSLI | GKGCMC | 1 cut(s) | 352 |
| BstX2I | RGATCY | 1 cut(s) | 547 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 794 |
| BstYI | RGATCY | 1 cut(s) | 547 |
| BtsCI | GGATG | 2 cut(s) | 123, 544 |
| BtsIMutI | CAGTG | 1 cut(s) | 31 |
| CaiI | CAGNNNCTG | 1 cut(s) | 30 |
| CfoI | GCGC | 1 cut(s) | 821 |
| Csp6I | GTAC | 2 cut(s) | 88, 299 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 688, 723 |
| CviAII | CATG | 4 cut(s) | 224, 447, 748, 788 |
| CviQI | GTAC | 2 cut(s) | 88, 299 |
| DdeI | CTNAG | 6 cut(s) | 108, 147, 282, 313, 494, 899 |
| DpnI | GATC | 3 cut(s) | 36, 266, 549 |
| DpnII | GATC | 3 cut(s) | 34, 264, 547 |
| Eam1104I | CTCTTC | 2 cut(s) | 480, 561 |
| EarI | CTCTTC | 2 cut(s) | 480, 561 |
| Eco57I | CTGAAG | 1 cut(s) | 819 |
| EcoRI | GAATTC | 1 cut(s) | 16 |
| FaeI | CATG | 4 cut(s) | 227, 450, 751, 791 |
| FaiI | YATR | 9 cut(s) | 174, 225, 297, 448, 633, 682, 749, 789, 846 |
| FatI | CATG | 4 cut(s) | 223, 446, 747, 787 |
| FokI | GGATG | 2 cut(s) | 130, 551 |
| FspBI | CTAG | 2 cut(s) | 203, 729 |
| GlaI | GCGC | 1 cut(s) | 820 |
| GsuI | CTGGAG | 1 cut(s) | 816 |
| HapII | CCGG | 3 cut(s) | 344, 353, 621 |
| HhaI | GCGC | 1 cut(s) | 821 |
| Hin1II | CATG | 4 cut(s) | 227, 450, 751, 791 |
| Hin6I | GCGC | 1 cut(s) | 819 |
| HinP1I | GCGC | 1 cut(s) | 819 |
| HincII | GTYRAC | 2 cut(s) | 694, 919 |
| HindII | GTYRAC | 2 cut(s) | 694, 919 |
| HindIII | AAGCTT | 2 cut(s) | 149, 395 |
| HinfI | GANTC | 6 cut(s) | 218, 275, 370, 490, 575, 770 |
| HpaI | GTTAAC | 2 cut(s) | 694, 919 |
| HpaII | CCGG | 3 cut(s) | 344, 353, 621 |
| HphI | GGTGA | 2 cut(s) | 179, 765 |
| Hpy166II | GTNNAC | 3 cut(s) | 350, 694, 919 |
| Hpy188I | TCNGA | 7 cut(s) | 15, 197, 283, 334, 495, 759, 913 |
| Hpy188III | TCNNGA | 2 cut(s) | 155, 857 |
| Hpy8I | GTNNAC | 3 cut(s) | 350, 694, 919 |
| HpyAV | CCTTC | 3 cut(s) | 789, 843, 932 |
| HpyCH4III | ACNGT | 2 cut(s) | 26, 327 |
| HpyCH4V | TGCA | 2 cut(s) | 350, 699 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 816 |
| HpyF3I | CTNAG | 6 cut(s) | 108, 147, 282, 313, 494, 899 |
| Hsp92II | CATG | 4 cut(s) | 227, 450, 751, 791 |
| HspAI | GCGC | 1 cut(s) | 819 |
| KspAI | GTTAAC | 2 cut(s) | 694, 919 |
| Kzo9I | GATC | 3 cut(s) | 34, 264, 547 |
| LmnI | GCTCC | 2 cut(s) | 7, 148 |
| LweI | GCATC | 2 cut(s) | 188, 781 |
| MaeI | CTAG | 2 cut(s) | 203, 729 |
| MaeIII | GTNAC | 3 cut(s) | 43, 235, 523 |
| MalI | GATC | 3 cut(s) | 36, 266, 549 |
| MboI | GATC | 3 cut(s) | 34, 264, 547 |
| MboII | GAAGA | 6 cut(s) | 365, 497, 570, 578, 624, 937 |
| MflI | RGATCY | 1 cut(s) | 547 |
| MhlI | GDGCHC | 1 cut(s) | 352 |
| MluCI | AATT | 6 cut(s) | 16, 52, 98, 137, 851, 884 |
| MlyI | GAGTC | 2 cut(s) | 484, 584 |
| MnlI | CCTC | 8 cut(s) | 21, 268, 289, 475, 540, 562, 873, 907 |
| MroXI | GAANNNNTTC | 1 cut(s) | 846 |
| MseI | TTAA | 5 cut(s) | 122, 359, 693, 824, 918 |
| MslI | CAYNNNNRTG | 1 cut(s) | 445 |
| MspA1I | CMGCKG | 1 cut(s) | 839 |
| MspI | CCGG | 3 cut(s) | 344, 353, 621 |
| MspR9I | CCNGG | 2 cut(s) | 345, 354 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 816 |
| NciI | CCSGG | 2 cut(s) | 345, 354 |
| NdeII | GATC | 3 cut(s) | 34, 264, 547 |
| NlaIII | CATG | 4 cut(s) | 227, 450, 751, 791 |
| NlaIV | GGNNCC | 3 cut(s) | 9, 144, 943 |
| NmuCI | GTSAC | 1 cut(s) | 43 |
| PdmI | GAANNNNTTC | 1 cut(s) | 846 |
| PfeI | GAWTC | 4 cut(s) | 218, 275, 370, 770 |
| PleI | GAGTC | 2 cut(s) | 484, 583 |
| PpsI | GAGTC | 2 cut(s) | 484, 583 |
| PshAI | GACNNNNGTC | 1 cut(s) | 907 |
| PspN4I | GGNNCC | 3 cut(s) | 9, 144, 943 |
| PstNI | CAGNNNCTG | 1 cut(s) | 30 |
| PsuI | RGATCY | 1 cut(s) | 547 |
| PvuII | CAGCTG | 1 cut(s) | 839 |
| RsaI | GTAC | 2 cut(s) | 89, 300 |
| RsaNI | GTAC | 2 cut(s) | 88, 299 |
| RseI | CAYNNNNRTG | 1 cut(s) | 445 |
| SaqAI | TTAA | 5 cut(s) | 122, 359, 693, 824, 918 |
| Sau3AI | GATC | 3 cut(s) | 34, 264, 547 |
| ScaI | AGTACT | 1 cut(s) | 89 |
| SchI | GAGTC | 2 cut(s) | 484, 584 |
| ScrFI | CCNGG | 2 cut(s) | 345, 354 |
| SduI | GDGCHC | 1 cut(s) | 352 |
| SfaNI | GCATC | 2 cut(s) | 188, 781 |
| SfcI | CTRYAG | 1 cut(s) | 669 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 445 |
| SmlI | CTYRAG | 1 cut(s) | 462 |
| SmoI | CTYRAG | 1 cut(s) | 462 |
| Sse9I | AATT | 6 cut(s) | 16, 52, 98, 137, 851, 884 |
| SspMI | CTAG | 2 cut(s) | 203, 729 |
| StyD4I | CCNGG | 2 cut(s) | 343, 352 |
| TaaI | ACNGT | 2 cut(s) | 26, 327 |
| TaqI | TCGA | 3 cut(s) | 267, 606, 628 |
| TaqII | GACCGA | 1 cut(s) | 534 |
| TasI | AATT | 6 cut(s) | 16, 52, 98, 137, 851, 884 |
| TatI | WGTACW | 2 cut(s) | 87, 298 |
| TfiI | GAWTC | 4 cut(s) | 218, 275, 370, 770 |
| Tru1I | TTAA | 5 cut(s) | 122, 359, 693, 824, 918 |
| Tru9I | TTAA | 5 cut(s) | 122, 359, 693, 824, 918 |
| TscAI | CASTG | 1 cut(s) | 31 |
| TseFI | GTSAC | 1 cut(s) | 43 |
| Tsp45I | GTSAC | 1 cut(s) | 43 |
| TspDTI | ATGAA | 3 cut(s) | 648, 743, 876 |
| TspRI | CASTG | 1 cut(s) | 31 |
| VneI | GTGCAC | 1 cut(s) | 348 |
| XapI | RAATTY | 3 cut(s) | 16, 52, 98 |
| XmnI | GAANNNNTTC | 1 cut(s) | 846 |
| XspI | CTAG | 2 cut(s) | 203, 729 |
| ZrmI | AGTACT | 1 cut(s) | 89 |