AT1G72530

plastid developmental protein DAG

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0020894
Physical Location & Seq
Forward (+)
27312954 .. 27314644
1691 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G72530.2

Sequence Viewer

Length: 567 bp
ATGGCGAGGATCATCAGAAGACCGTTAAATTTGACGGCGGCCGTCCGGTTCCGACTTTCTCCGTTGTCTCCATTCTCCGGTAACTCTGGTTCTATTAACTCGGAAACGACTAGTTGGTCTGAGTTAATTCGAGTACCGAGTTTAGTCGAGGGATGCGATTACAAGCACTGGCTGGTTCTCATGAAGCCTCCCAATGGATACCCAACTCGAAATCACATTGTCCAAAGCTTTGTCGAAACCCTAGCCATGGCTCTAGGGAGCGAAGAAGAAGCTAAGAGATCGATATACTCTGTATCTACAAAGTACTACTATGCATTTGGCTGCAGGATTCATGAACCTTTGACTTACAAGATTAGATCTCTGCCTGATGTTAAATGGGTTTTACCAGATTCGTTTATAGTGGATGGTGACAATAGATACGGAGGAGAGCCGTTTGTCGATGGAGAAGTTGTTCCGTATGATGAGAAGTATCATGCGGACTGGCTACGAGATCAAACTGATGAGGATGCTAAAAGCGGAGTAGTCAAAAAGAAGCATAGGAGGAAAAGAAAGAAGAAGTTGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000959 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:1900864 GO:1901360
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

21.62

Weight (kDa)

9.35

Isoelectric Point (pI)

55.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MORF_dom PF21864 54 - 141 7.5e-32 Multiple organellar RNA editing factor 1, MORF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020894)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G72530 AT1G72530
prunus_persica Prupe.3G039400_v2.0.a1 Prupe.3G039400_v2.0.a1
pyrus_communis pycom17g15920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 115
AciI CCGC 3 cut(s) 38, 476, 516
AclWI GGATC 1 cut(s) 17
AcoI YGGCCR 1 cut(s) 39
AcsI RAATTY 1 cut(s) 28
AfaI GTAC 2 cut(s) 135, 305
AfiI CCNNNNNNNGG 3 cut(s) 77, 194, 247
AhlI ACTAGT 1 cut(s) 110
AloI GAACNNNNNNTCC 2 cut(s) 435, 467
AluBI AGCT 2 cut(s) 228, 272
AluI AGCT 2 cut(s) 228, 272
Alw26I GTCTC 1 cut(s) 72
AlwI GGATC 1 cut(s) 17
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 1 cut(s) 321
ApoI RAATTY 1 cut(s) 28
Asp700I GAANNNNTTC 1 cut(s) 450
AsuHPI GGTGA 1 cut(s) 419
BbsI GAAGAC 1 cut(s) 25
BbvI GCAGC 1 cut(s) 308
BccI CCATC 2 cut(s) 398, 434
BceAI ACGGC 3 cut(s) 26, 51, 415
BciVI GTATCC 1 cut(s) 191
BcoDI GTCTC 1 cut(s) 72
BcuI ACTAGT 1 cut(s) 110
BfaI CTAG 3 cut(s) 111, 242, 254
BfmI CTRYAG 1 cut(s) 322
BfuI GTATCC 1 cut(s) 191
BglII AGATCT 1 cut(s) 356
BisI GCNGC 2 cut(s) 39, 322
BlsI GCNGC 2 cut(s) 40, 323
BmcAI AGTACT 1 cut(s) 305
BmiI GGNNCC 1 cut(s) 50
BmsI GCATC 2 cut(s) 143, 496
BpiI GAAGAC 1 cut(s) 25
Bsa29I ATCGAT 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 246
BsaWI WCCGGW 2 cut(s) 45, 77
BsaXI ACNNNNNCTCC 2 cut(s) 435, 465
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 194, 247
Bse1I ACTGG 2 cut(s) 173, 485
BseCI ATCGAT 1 cut(s) 281
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 3 cut(s) 158, 409, 511
BseLI CCNNNNNNNGG 3 cut(s) 77, 194, 247
BseMII CTCAG 1 cut(s) 111
BseNI ACTGG 2 cut(s) 173, 485
BseRI GAGGAG 1 cut(s) 438
BseX3I CGGCCG 1 cut(s) 39
BseXI GCAGC 1 cut(s) 308
Bsh1285I CGRYCG 1 cut(s) 42
BshFI GGCC 1 cut(s) 41
BshVI ATCGAT 1 cut(s) 281
BsiEI CGRYCG 1 cut(s) 42
BsiSI CCGG 2 cut(s) 46, 78
BslI CCNNNNNNNGG 3 cut(s) 77, 194, 247
BsmAI GTCTC 1 cut(s) 72
BsnI GGCC 1 cut(s) 41
Bsp143I GATC 4 cut(s) 9, 278, 356, 490
Bsp19I CCATGG 1 cut(s) 246
BspACI CCGC 3 cut(s) 38, 476, 516
BspANI GGCC 1 cut(s) 41
BspCNI CTCAG 1 cut(s) 112
BspDI ATCGAT 1 cut(s) 281
BspHI TCATGA 2 cut(s) 180, 331
BspLI GGNNCC 1 cut(s) 50
BspMAI CTGCAG 1 cut(s) 326
BspPI GGATC 1 cut(s) 17
BsrI ACTGG 2 cut(s) 173, 485
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 4 cut(s) 9, 278, 356, 490
BssT1I CCWWGG 1 cut(s) 246
Bst4CI ACNGT 1 cut(s) 24
BstDEI CTNAG 2 cut(s) 120, 273
BstDSI CCRYGG 1 cut(s) 246
BstF5I GGATG 3 cut(s) 158, 409, 511
BstKTI GATC 4 cut(s) 12, 281, 359, 493
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 4 cut(s) 9, 278, 356, 490
BstMCI CGRYCG 1 cut(s) 42
BstSFI CTRYAG 1 cut(s) 322
BstV1I GCAGC 1 cut(s) 308
BstV2I GAAGAC 1 cut(s) 25
BstX2I RGATCY 1 cut(s) 356
BstYI RGATCY 1 cut(s) 356
BstZI CGGCCG 1 cut(s) 39
Bsu15I ATCGAT 1 cut(s) 281
BsuI GTATCC 1 cut(s) 191
BsuRI GGCC 1 cut(s) 41
BsuTUI ATCGAT 1 cut(s) 281
BtgI CCRYGG 1 cut(s) 246
BtsCI GGATG 3 cut(s) 158, 409, 511
BtsIMutI CAGTG 1 cut(s) 166
CciI TCATGA 2 cut(s) 180, 331
ClaI ATCGAT 1 cut(s) 281
Csp6I GTAC 2 cut(s) 134, 304
CviAII CATG 4 cut(s) 181, 247, 332, 473
CviQI GTAC 2 cut(s) 134, 304
DdeI CTNAG 2 cut(s) 120, 273
DpnI GATC 4 cut(s) 11, 280, 358, 492
DpnII GATC 4 cut(s) 9, 278, 356, 490
DrdI GACNNNNNNGTC 1 cut(s) 115
DseDI GACNNNNNNGTC 1 cut(s) 115
EaeI YGGCCR 1 cut(s) 39
EagI CGGCCG 1 cut(s) 39
EclXI CGGCCG 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 246
Eco52I CGGCCG 1 cut(s) 39
EcoT14I CCWWGG 1 cut(s) 246
EcoT22I ATGCAT 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 4 cut(s) 184, 250, 335, 476
FaiI YATR 9 cut(s) 182, 248, 286, 312, 333, 398, 459, 474, 537
FatI CATG 4 cut(s) 180, 246, 331, 472
Fnu4HI GCNGC 2 cut(s) 39, 322
FokI GGATG 3 cut(s) 165, 416, 518
Fsp4HI GCNGC 2 cut(s) 39, 322
FspBI CTAG 3 cut(s) 111, 242, 254
GluI GCNGC 2 cut(s) 39, 322
HaeIII GGCC 1 cut(s) 41
HapII CCGG 2 cut(s) 46, 78
Hin1II CATG 4 cut(s) 184, 250, 335, 476
HindIII AAGCTT 1 cut(s) 226
HinfI GANTC 2 cut(s) 328, 389
HpaII CCGG 2 cut(s) 46, 78
HphI GGTGA 1 cut(s) 419
Hpy188I TCNGA 4 cut(s) 17, 53, 103, 121
Hpy188III TCNNGA 2 cut(s) 181, 332
HpyCH4III ACNGT 1 cut(s) 24
HpyCH4V TGCA 2 cut(s) 314, 324
HpyF3I CTNAG 2 cut(s) 120, 273
Hsp92II CATG 4 cut(s) 184, 250, 335, 476
Kzo9I GATC 4 cut(s) 9, 278, 356, 490
LmnI GCTCC 1 cut(s) 258
LpnPI CCDG 9 cut(s) 59, 72, 91, 154, 158, 310, 378, 399, 466
Lsp1109I GCAGC 1 cut(s) 308
LweI GCATC 2 cut(s) 143, 496
MaeI CTAG 3 cut(s) 111, 242, 254
MaeIII GTNAC 2 cut(s) 80, 407
MalI GATC 4 cut(s) 11, 280, 358, 492
MboI GATC 4 cut(s) 9, 278, 356, 490
MboII GAAGA 4 cut(s) 30, 275, 278, 565
MflI RGATCY 1 cut(s) 356
MluCI AATT 2 cut(s) 28, 126
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 5 cut(s) 142, 198, 416, 496, 534
Mph1103I ATGCAT 1 cut(s) 316
MroXI GAANNNNTTC 1 cut(s) 450
MseI TTAA 5 cut(s) 26, 96, 125, 372, 565
MspI CCGG 2 cut(s) 46, 78
NcoI CCATGG 1 cut(s) 246
NdeII GATC 4 cut(s) 9, 278, 356, 490
NlaIII CATG 4 cut(s) 184, 250, 335, 476
NlaIV GGNNCC 1 cut(s) 50
NmuCI GTSAC 1 cut(s) 407
NsiI ATGCAT 1 cut(s) 316
PagI TCATGA 2 cut(s) 180, 331
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 450
PfeI GAWTC 2 cut(s) 328, 389
PkrI GCNGC 2 cut(s) 40, 323
PspN4I GGNNCC 1 cut(s) 50
PsrI GAACNNNNNNTAC 2 cut(s) 73, 105
PstI CTGCAG 1 cut(s) 326
PsuI RGATCY 1 cut(s) 356
RsaI GTAC 2 cut(s) 135, 305
RsaNI GTAC 2 cut(s) 134, 304
SaqAI TTAA 5 cut(s) 26, 96, 125, 372, 565
SatI GCNGC 2 cut(s) 39, 322
Sau3AI GATC 4 cut(s) 9, 278, 356, 490
ScaI AGTACT 1 cut(s) 305
SetI ASST 3 cut(s) 230, 274, 340
SfaNI GCATC 2 cut(s) 143, 496
SfcI CTRYAG 1 cut(s) 322
SpeI ACTAGT 1 cut(s) 110
Sse9I AATT 2 cut(s) 28, 126
SsiI CCGC 3 cut(s) 38, 476, 516
SspMI CTAG 3 cut(s) 111, 242, 254
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 24
TaqI TCGA 6 cut(s) 130, 147, 208, 234, 281, 438
TasI AATT 2 cut(s) 28, 126
TatI WGTACW 1 cut(s) 303
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 2 cut(s) 328, 389
Tru1I TTAA 5 cut(s) 26, 96, 125, 372, 565
Tru9I TTAA 5 cut(s) 26, 96, 125, 372, 565
TscAI CASTG 1 cut(s) 173
TseFI GTSAC 1 cut(s) 407
TseI GCWGC 1 cut(s) 321
Tsp45I GTSAC 1 cut(s) 407
TspDTI ATGAA 3 cut(s) 197, 320, 348
TspGWI ACGGA 3 cut(s) 51, 435, 444
TspRI CASTG 1 cut(s) 173
XapI RAATTY 1 cut(s) 28
XmnI GAANNNNTTC 1 cut(s) 450
XspI CTAG 3 cut(s) 111, 242, 254
ZrmI AGTACT 1 cut(s) 305
Zsp2I ATGCAT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.