Prupe.3G039400_v2.0.a1

protein At3g15000, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0020894
Physical Location & Seq
Forward (+)
2846135 .. 2848073
1939 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G039400.1

Sequence Viewer

Length: 555 bp
ATGAGATCAAGCATTGTGCGAAAGCCGTTAAGCCTAACGGCGACATTACTCCGCCGTTACCGTTTCTCAAGTCCGCCGTCGTTTCCATCTTCGCGTTTCTCTTCCTCTTCAGCTCCGACAAGCTCCGCGTCCGCGGACAGCTCGGCGGCGACTCAGTGCAGCGGGTTGACTCGGTTGGCCTCGCTGGTGGATGGCTGCGACTACGAGCACTGGCTCGTGGTTATGGAGCCTCCTAAGGGCTACCCTCTTCGCGACGAGATCATCAATGGCTACATCCAAACCCTAGCTACGGCCCTCGGAAGTGCAGAGAAGGCAAAGAAGTCAATTTACTCTGTTTCTACAAAGTACTACTACGCATTTGGCTGCAAAGTCCCAGAGAATTTGACTTTTAAGATCAAATCTCTGACCAATGTGAAATGGGTTCTACCAGATTCTTACTTGTGTCATGGTGAAAATGACTATGGAGGAGAACCTTTGGTTGATGGGGTTGTTATTCCGTATGATGAAAAATATCATGCAGACTGGGTGTGCGACGAAAATGACACAACAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

20.32

Weight (kDa)

6.29

Isoelectric Point (pI)

38.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020894)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G72530 AT1G72530
prunus_persica Prupe.3G039400_v2.0.a1 Prupe.3G039400_v2.0.a1
pyrus_communis pycom17g15920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 94, 128, 134, 252
AciI CCGC 7 cut(s) 52, 74, 126, 132, 134, 146, 162
AcsI RAATTY 1 cut(s) 379
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 1 cut(s) 347
AfiI CCNNNNNNNGG 2 cut(s) 236, 289
AluBI AGCT 4 cut(s) 113, 123, 141, 287
AluI AGCT 4 cut(s) 113, 123, 141, 287
Alw21I GWGCWC 1 cut(s) 210
AoxI GGCC 2 cut(s) 177, 291
ApeKI GCWGC 3 cut(s) 159, 195, 363
ApoI RAATTY 1 cut(s) 379
AspS9I GGNCC 1 cut(s) 292
AsuHPI GGTGA 1 cut(s) 461
AxyI CCTNAGG 1 cut(s) 234
BarI GAAGNNNNNNTAC 2 cut(s) 311, 343
BauI CACGAG 1 cut(s) 215
Bbv12I GWGCWC 1 cut(s) 210
BbvI GCAGC 3 cut(s) 171, 182, 350
BccI CCATC 3 cut(s) 94, 185, 476
BceAI ACGGC 5 cut(s) 10, 39, 54, 61, 306
BfaI CTAG 1 cut(s) 284
BisI GCNGC 4 cut(s) 147, 160, 196, 364
BlsI GCNGC 4 cut(s) 148, 161, 197, 365
BmcAI AGTACT 1 cut(s) 347
BmgT120I GGNCC 1 cut(s) 292
BmiI GGNNCC 1 cut(s) 228
BmrI ACTGGG 1 cut(s) 532
BmuI ACTGGG 1 cut(s) 532
BpuEI CTTGAG 1 cut(s) 52
BsaJI CCNNGG 2 cut(s) 132, 295
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 289
Bse1I ACTGG 2 cut(s) 215, 527
Bse21I CCTNAGG 1 cut(s) 234
BseDI CCNNGG 2 cut(s) 132, 295
BseGI GGATG 2 cut(s) 196, 273
BseLI CCNNNNNNNGG 2 cut(s) 236, 289
BseMII CTCAG 1 cut(s) 167
BseNI ACTGG 2 cut(s) 215, 527
BseRI GAGGAG 1 cut(s) 480
BseXI GCAGC 3 cut(s) 171, 182, 350
BsgI GTGCAG 2 cut(s) 178, 324
Bsh1236I CGCG 4 cut(s) 94, 128, 134, 252
BshFI GGCC 2 cut(s) 179, 293
BsiHKAI GWGCWC 1 cut(s) 210
BslFI GGGAC 1 cut(s) 356
BslI CCNNNNNNNGG 2 cut(s) 236, 289
BsmFI GGGAC 1 cut(s) 356
BsnI GGCC 2 cut(s) 179, 293
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 3 cut(s) 5, 258, 393
Bsp68I TCGCGA 1 cut(s) 252
BspACI CCGC 7 cut(s) 52, 74, 126, 132, 134, 146, 162
BspANI GGCC 2 cut(s) 179, 293
BspCNI CTCAG 1 cut(s) 166
BspFNI CGCG 4 cut(s) 94, 128, 134, 252
BspLI GGNNCC 1 cut(s) 228
BsrI ACTGG 2 cut(s) 215, 527
BssECI CCNNGG 2 cut(s) 132, 295
BssMI GATC 3 cut(s) 5, 258, 393
BssSI CACGAG 1 cut(s) 215
Bst2BI CACGAG 1 cut(s) 215
Bst4CI ACNGT 2 cut(s) 62, 550
Bst6I CTCTTC 3 cut(s) 106, 112, 252
BstDEI CTNAG 2 cut(s) 153, 234
BstDSI CCRYGG 1 cut(s) 132
BstF5I GGATG 2 cut(s) 196, 273
BstFNI CGCG 4 cut(s) 94, 128, 134, 252
BstKTI GATC 3 cut(s) 8, 261, 396
BstMBI GATC 3 cut(s) 5, 258, 393
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstUI CGCG 4 cut(s) 94, 128, 134, 252
BstV1I GCAGC 3 cut(s) 171, 182, 350
Bsu36I CCTNAGG 1 cut(s) 234
BsuRI GGCC 2 cut(s) 179, 293
BtgI CCRYGG 1 cut(s) 132
BtsCI GGATG 2 cut(s) 196, 273
BtsIMutI CAGTG 2 cut(s) 161, 208
BtuMI TCGCGA 1 cut(s) 252
Cfr13I GGNCC 1 cut(s) 292
Cfr42I CCGCGG 1 cut(s) 135
CseI GACGC 1 cut(s) 117
Csp6I GTAC 1 cut(s) 346
CviAII CATG 2 cut(s) 446, 515
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 2 cut(s) 153, 234
DpnI GATC 3 cut(s) 7, 260, 395
DpnII GATC 3 cut(s) 5, 258, 393
Eam1104I CTCTTC 3 cut(s) 106, 112, 252
EarI CTCTTC 3 cut(s) 106, 112, 252
EciI GGCGGA 2 cut(s) 41, 63
Eco57I CTGAAG 1 cut(s) 93
Eco81I CCTNAGG 1 cut(s) 234
FaeI CATG 2 cut(s) 449, 518
FaiI YATR 5 cut(s) 224, 447, 462, 501, 516
FaqI GGGAC 1 cut(s) 356
FatI CATG 2 cut(s) 445, 514
FauI CCCGC 1 cut(s) 155
Fnu4HI GCNGC 4 cut(s) 147, 160, 196, 364
FokI GGATG 2 cut(s) 203, 260
Fsp4HI GCNGC 4 cut(s) 147, 160, 196, 364
FspBI CTAG 1 cut(s) 284
GluI GCNGC 4 cut(s) 147, 160, 196, 364
HaeIII GGCC 2 cut(s) 179, 293
HgaI GACGC 1 cut(s) 117
Hin1II CATG 2 cut(s) 449, 518
HincII GTYRAC 1 cut(s) 168
HindII GTYRAC 1 cut(s) 168
HinfI GANTC 3 cut(s) 151, 169, 431
HphI GGTGA 1 cut(s) 461
Hpy166II GTNNAC 1 cut(s) 168
Hpy188I TCNGA 3 cut(s) 117, 299, 405
Hpy188III TCNNGA 1 cut(s) 251
Hpy8I GTNNAC 1 cut(s) 168
Hpy99I CGWCG 3 cut(s) 82, 257, 536
HpyAV CCTTC 1 cut(s) 304
HpyCH4III ACNGT 2 cut(s) 62, 550
HpyCH4V TGCA 4 cut(s) 159, 305, 366, 518
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpyF3I CTNAG 2 cut(s) 153, 234
Hsp92II CATG 2 cut(s) 449, 518
KspI CCGCGG 1 cut(s) 135
Kzo9I GATC 3 cut(s) 5, 258, 393
LmnI GCTCC 3 cut(s) 118, 128, 226
LpnPI CCDG 5 cut(s) 170, 196, 387, 441, 508
Lsp1109I GCAGC 3 cut(s) 171, 182, 350
MaeI CTAG 1 cut(s) 284
MaeIII GTNAC 1 cut(s) 56
MalI GATC 3 cut(s) 7, 260, 395
MboI GATC 3 cut(s) 5, 258, 393
MboII GAAGA 4 cut(s) 81, 93, 99, 239
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 2 cut(s) 324, 379
MlyI GAGTC 2 cut(s) 145, 163
MmeI TCCRAC 1 cut(s) 140
MnlI CCTC 6 cut(s) 115, 190, 240, 255, 305, 458
MseI TTAA 3 cut(s) 29, 390, 553
MspA1I CMGCKG 2 cut(s) 134, 162
MvnI CGCG 4 cut(s) 94, 128, 134, 252
MwoI GCNNNNNNNGC 1 cut(s) 311
NdeII GATC 3 cut(s) 5, 258, 393
NlaIII CATG 2 cut(s) 449, 518
NlaIV GGNNCC 1 cut(s) 228
NmeAIII GCCGAG 1 cut(s) 122
NruI TCGCGA 1 cut(s) 252
PfeI GAWTC 1 cut(s) 431
PkrI GCNGC 4 cut(s) 148, 161, 197, 365
PleI GAGTC 2 cut(s) 145, 163
PpsI GAGTC 2 cut(s) 145, 163
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 1 cut(s) 292
RruI TCGCGA 1 cut(s) 252
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
SacII CCGCGG 1 cut(s) 135
SaqAI TTAA 3 cut(s) 29, 390, 553
SatI GCNGC 4 cut(s) 147, 160, 196, 364
Sau3AI GATC 3 cut(s) 5, 258, 393
Sau96I GGNCC 1 cut(s) 292
ScaI AGTACT 1 cut(s) 347
SchI GAGTC 2 cut(s) 145, 163
SduI GDGCHC 1 cut(s) 210
SetI ASST 5 cut(s) 115, 125, 143, 289, 475
Sfr303I CCGCGG 1 cut(s) 135
SgrBI CCGCGG 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
Sse9I AATT 2 cut(s) 324, 379
SsiI CCGC 7 cut(s) 52, 74, 126, 132, 134, 146, 162
SspMI CTAG 1 cut(s) 284
TaaI ACNGT 2 cut(s) 62, 550
TasI AATT 2 cut(s) 324, 379
TatI WGTACW 1 cut(s) 345
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 1 cut(s) 431
Tru1I TTAA 3 cut(s) 29, 390, 553
Tru9I TTAA 3 cut(s) 29, 390, 553
TscAI CASTG 2 cut(s) 161, 215
TseI GCWGC 3 cut(s) 159, 195, 363
TspDTI ATGAA 1 cut(s) 519
TspGWI ACGGA 1 cut(s) 486
TspRI CASTG 2 cut(s) 161, 215
XapI RAATTY 1 cut(s) 379
XspI CTAG 1 cut(s) 284
ZrmI AGTACT 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.