Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0020966

Physical Location & Seq

Genomic Coordinates Forward (+)

30420102 .. 30421995

Gene Structure 1894 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G80970.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGACGAATTTGAAGGATTGAAGAGAGAAGTTGAGAGACTTTTGGATATGGTAGATTCTGAGAACAGCGATTGTGAGGAAAAAATAGCAATACAAGAAGAAGTTGGCGATCTTCCGAGTAGTTCTGTGGCTGTGGAGTTTCTCGAAGACGAGATCGATAGAAAGGAAGAAATCCTTCTTGCTGCGAGTTGCACGCTGCTGAACATGATTAGCGGACTTGATCACTCCTTTGATGGCAATGAAAGAGATATGGGACGACTACAAGTTGAAGAATTCAGAGCCGCCTGTCTCGGCCACAAAGTGTTGGTGAACGAAACGGAGGAGCAAACTTTCGAGAGAGCGGATTTGATTAGAACTCTGTGGCAAAAAAAAATTCTCGACTCTGTGCGTTTGGCTTACTTACAAGGGGAAAAGGAGATGCCGTTTCGTCCCTACGATCAAACCGAATTAGAGGCACTCAAAACGGACTCGGGTGAGAAGGTTTACAGGCTTGTTAGGAAGGGCTTTCGTGAAGCGCGAGTGGCTGTGCGGACGAGTGTTGATTTCAAACCATGGGATCTTGAAGAAGGAAGAGAATGTACTCTTTCCGAGTTACTAGATCAGCTTCAAGCGTTAATCAGGGGGCGTATAAGACGTCATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0009267 GO:0009268 GO:0009605 GO:0009628 GO:0009636 GO:0009719 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010243 GO:0010447 GO:0014070 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034198 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0042542 GO:0042594 GO:0046677 GO:0050896 GO:0051716 GO:0060992 GO:0070301 GO:0070887 GO:0071214 GO:0071236 GO:0071310 GO:0071407 GO:0071417 GO:0071467 GO:0071468 GO:0071495 GO:0071496 GO:0072755 GO:0097237 GO:0104004 GO:1901561 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1990451 GO:1990928

KEGG Pathways

Metabolic & Signaling

ko04138 ko04140 ko04141 ko05160 ko05162 ko05164 ko05168 ko05169 map04138 map04140 map04141 map05160 map05162 map05164 map05168 map05169

Pfam Domains

Protein Families

HGTP_anticodon2 Pkinase RWD tRNA-synt_His

Protein Analysis

214

Amino Acids

24.77

Weight (kDa)

4.71

Isoelectric Point (pI)

53.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XH	PF03469	82 - 206	1.9e-14	XH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80970 AT1G80970 AT1G80970 AT1G80970 AT1G80990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	637
AccBSI	CCGCTC	1 cut(s)	341
AccII	CGCG	1 cut(s)	517
AciI	CCGC	4 cut(s)	213, 282, 341, 529
AclWI	GGATC	1 cut(s)	564
AcoI	YGGCCR	1 cut(s)	292
AcsI	RAATTY	3 cut(s)	8, 272, 372
AcyI	GRCGYC	1 cut(s)	634
AdeI	CACNNNGTG	1 cut(s)	301
AfaI	GTAC	1 cut(s)	580
AgsI	TTSAA	6 cut(s)	14, 22, 269, 547, 563, 608
AluBI	AGCT	1 cut(s)	604
AluI	AGCT	1 cut(s)	604
Alw26I	GTCTC	2 cut(s)	31, 293
AlwI	GGATC	1 cut(s)	564
Ama87I	CYCGRG	1 cut(s)	469
AoxI	GGCC	1 cut(s)	292
ApeKI	GCWGC	2 cut(s)	182, 196
ApoI	RAATTY	3 cut(s)	8, 272, 372
Asp700I	GAANNNNTTC	1 cut(s)	174
AspLEI	GCGC	1 cut(s)	517
AsuHPI	GGTGA	2 cut(s)	319, 485
AvaI	CYCGRG	1 cut(s)	469
BarI	GAAGNNNNNNTAC	2 cut(s)	562, 594
BbsI	GAAGAC	1 cut(s)	153
BbvI	GCAGC	2 cut(s)	169, 183
BccI	CCATC	1 cut(s)	227
BceAI	ACGGC	1 cut(s)	406
BclI	TGATCA	1 cut(s)	220
BcoDI	GTCTC	2 cut(s)	31, 293
BfaI	CTAG	1 cut(s)	596
BisI	GCNGC	3 cut(s)	183, 197, 282
BlsI	GCNGC	3 cut(s)	184, 198, 283
BmeT110I	CYCGRG	1 cut(s)	469
BmsI	GCATC	1 cut(s)	408
BpiI	GAAGAC	1 cut(s)	153
Bsa29I	ATCGAT	1 cut(s)	156
BsaHI	GRCGYC	1 cut(s)	634
BsaJI	CCNNGG	1 cut(s)	551
BsaXI	ACNNNNNCTCC	2 cut(s)	407, 437
Bse3DI	GCAATG	1 cut(s)	244
BseCI	ATCGAT	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	551
BseMI	GCAATG	1 cut(s)	244
BseMII	CTCAG	1 cut(s)	51
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	2 cut(s)	169, 183
Bsh1236I	CGCG	1 cut(s)	517
BshFI	GGCC	1 cut(s)	294
BshVI	ATCGAT	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	469
BslFI	GGGAC	2 cut(s)	267, 414
BsmAI	GTCTC	2 cut(s)	31, 293
BsmFI	GGGAC	2 cut(s)	267, 414
BsnI	GGCC	1 cut(s)	294
BsoBI	CYCGRG	1 cut(s)	469
Bsp143I	GATC	6 cut(s)	109, 153, 220, 436, 556, 598
Bsp19I	CCATGG	1 cut(s)	551
BspACI	CCGC	4 cut(s)	213, 282, 341, 529
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	1 cut(s)	52
BspDI	ATCGAT	1 cut(s)	156
BspFNI	CGCG	1 cut(s)	517
BspPI	GGATC	1 cut(s)	564
BsrBI	CCGCTC	1 cut(s)	341
BsrDI	GCAATG	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	551
BssMI	GATC	6 cut(s)	109, 153, 220, 436, 556, 598
BssNI	GRCGYC	1 cut(s)	634
BssT1I	CCWWGG	1 cut(s)	551
Bst6I	CTCTTC	2 cut(s)	17, 565
BstACI	GRCGYC	1 cut(s)	634
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	1 cut(s)	60
BstDSI	CCRYGG	1 cut(s)	551
BstFNI	CGCG	1 cut(s)	517
BstHHI	GCGC	1 cut(s)	517
BstKTI	GATC	6 cut(s)	112, 156, 223, 439, 559, 601
BstMAI	GTCTC	2 cut(s)	31, 293
BstMBI	GATC	6 cut(s)	109, 153, 220, 436, 556, 598
BstMWI	GCNNNNNNNGC	1 cut(s)	521
BstUI	CGCG	1 cut(s)	517
BstV1I	GCAGC	2 cut(s)	169, 183
BstV2I	GAAGAC	1 cut(s)	153
BstX2I	RGATCY	1 cut(s)	556
BstYI	RGATCY	1 cut(s)	556
Bsu15I	ATCGAT	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	294
BsuTUI	ATCGAT	1 cut(s)	156
BtgI	CCRYGG	1 cut(s)	551
Cac8I	GCNNGC	1 cut(s)	194
CfoI	GCGC	1 cut(s)	517
ClaI	ATCGAT	1 cut(s)	156
Csp6I	GTAC	1 cut(s)	579
CviAII	CATG	3 cut(s)	205, 552, 638
CviJI	RGCY	8 cut(s)	131, 281, 294, 395, 490, 504, 524, 604
CviKI_1	RGCY	8 cut(s)	131, 281, 294, 395, 490, 504, 524, 604
CviQI	GTAC	1 cut(s)	579
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	6 cut(s)	111, 155, 222, 438, 558, 600
DpnII	GATC	6 cut(s)	109, 153, 220, 436, 556, 598
DraIII	CACNNNGTG	1 cut(s)	301
EaeI	YGGCCR	1 cut(s)	292
Eam1104I	CTCTTC	2 cut(s)	17, 565
EarI	CTCTTC	2 cut(s)	17, 565
Eco130I	CCWWGG	1 cut(s)	551
Eco88I	CYCGRG	1 cut(s)	469
EcoRI	GAATTC	1 cut(s)	272
EcoT14I	CCWWGG	1 cut(s)	551
ErhI	CCWWGG	1 cut(s)	551
FaeI	CATG	3 cut(s)	208, 555, 641
FaiI	YATR	6 cut(s)	50, 206, 251, 553, 629, 639
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FaqI	GGGAC	2 cut(s)	267, 414
FatI	CATG	3 cut(s)	204, 551, 637
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	3 cut(s)	183, 197, 282
Fsp4HI	GCNGC	3 cut(s)	183, 197, 282
FspBI	CTAG	1 cut(s)	596
GlaI	GCGC	1 cut(s)	516
GluI	GCNGC	3 cut(s)	183, 197, 282
HaeIII	GGCC	1 cut(s)	294
HhaI	GCGC	1 cut(s)	517
Hin1I	GRCGYC	1 cut(s)	634
Hin1II	CATG	3 cut(s)	208, 555, 641
Hin6I	GCGC	1 cut(s)	515
HinP1I	GCGC	1 cut(s)	515
HinfI	GANTC	3 cut(s)	56, 380, 467
HphI	GGTGA	2 cut(s)	319, 485
Hpy166II	GTNNAC	2 cut(s)	310, 484
Hpy188I	TCNGA	4 cut(s)	61, 117, 278, 589
Hpy188III	TCNNGA	5 cut(s)	143, 334, 377, 509, 560
Hpy8I	GTNNAC	2 cut(s)	310, 484
HpyAV	CCTTC	5 cut(s)	8, 185, 472, 493, 560
HpyCH4IV	ACGT	1 cut(s)	634
HpyCH4V	TGCA	1 cut(s)	192
HpyF10VI	GCNNNNNNNGC	1 cut(s)	521
HpyF3I	CTNAG	1 cut(s)	60
HpySE526I	ACGT	1 cut(s)	634
Hsp92I	GRCGYC	1 cut(s)	634
Hsp92II	CATG	3 cut(s)	208, 555, 641
HspAI	GCGC	1 cut(s)	515
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	6 cut(s)	109, 153, 220, 436, 556, 598
LmnI	GCTCC	1 cut(s)	322
LpnPI	CCDG	3 cut(s)	298, 472, 604
Lsp1109I	GCAGC	2 cut(s)	169, 183
LweI	GCATC	1 cut(s)	408
MaeI	CTAG	1 cut(s)	596
MaeII	ACGT	1 cut(s)	634
MaeIII	GTNAC	1 cut(s)	591
MalI	GATC	6 cut(s)	111, 155, 222, 438, 558, 600
MbiI	CCGCTC	1 cut(s)	341
MboI	GATC	6 cut(s)	109, 153, 220, 436, 556, 598
MboII	GAAGA	8 cut(s)	34, 104, 110, 158, 179, 281, 575, 582
MflI	RGATCY	1 cut(s)	556
MluCI	AATT	4 cut(s)	8, 272, 372, 446
MlyI	GAGTC	2 cut(s)	374, 461
MnlI	CCTC	3 cut(s)	70, 313, 445
MroXI	GAANNNNTTC	1 cut(s)	174
MseI	TTAA	1 cut(s)	614
MvnI	CGCG	1 cut(s)	517
MwoI	GCNNNNNNNGC	1 cut(s)	521
NcoI	CCATGG	1 cut(s)	551
NdeII	GATC	6 cut(s)	109, 153, 220, 436, 556, 598
NlaIII	CATG	3 cut(s)	208, 555, 641
NmeAIII	GCCGAG	1 cut(s)	270
PcsI	WCGNNNNNNNCGW	2 cut(s)	441, 514
PdmI	GAANNNNTTC	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	56
PkrI	GCNGC	3 cut(s)	184, 198, 283
PleI	GAGTC	2 cut(s)	374, 461
PpsI	GAGTC	2 cut(s)	374, 461
PsuI	RGATCY	1 cut(s)	556
RsaI	GTAC	1 cut(s)	580
RsaNI	GTAC	1 cut(s)	579
SaqAI	TTAA	1 cut(s)	614
SatI	GCNGC	3 cut(s)	183, 197, 282
Sau3AI	GATC	6 cut(s)	109, 153, 220, 436, 556, 598
SchI	GAGTC	2 cut(s)	374, 461
SetI	ASST	3 cut(s)	483, 606, 637
SfaNI	GCATC	1 cut(s)	408
Sse9I	AATT	4 cut(s)	8, 272, 372, 446
SsiI	CCGC	4 cut(s)	213, 282, 341, 529
SspMI	CTAG	1 cut(s)	596
StyI	CCWWGG	1 cut(s)	551
TaiI	ACGT	1 cut(s)	637
TaqI	TCGA	4 cut(s)	144, 156, 333, 378
TasI	AATT	4 cut(s)	8, 272, 372, 446
TatI	WGTACW	1 cut(s)	578
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	1 cut(s)	614
Tru9I	TTAA	1 cut(s)	614
TseI	GCWGC	2 cut(s)	182, 196
TspDTI	ATGAA	1 cut(s)	255
TspGWI	ACGGA	2 cut(s)	332, 479
XapI	RAATTY	3 cut(s)	8, 272, 372
XmnI	GAANNNNTTC	1 cut(s)	174
XspI	CTAG	1 cut(s)	596
ZraI	GACGTC	1 cut(s)	635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.