Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0020966

Physical Location & Seq

Genomic Coordinates Forward (+)

30424421 .. 30425192

Gene Structure 772 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G80990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGATAGATTGAGTGACTTTGAGAGGTTGACGGCAGAAATTAAGTCCCTGAAGGAGTCTTTAAAGGAGAAAATTGATAAAGTTCTTTCAAGAAGCGTGAAAGAAGCTAGTGAAACCTCAGAAGAGAAAAAGGAACAAAGTGAAATCGCAGAAGAGGGAAACGAAGATGGTGATAACGTATTGGTGTCTTCTCTAGAAGACGAGATCGATAGTAAAGAAGAAGAAGTGCTTGCTGCGAGTTGCAGGCTGCTTAACATGTTTAGGGAACTTGATTGCACCTTCGATGGCCCTGAAAGAAGAATGGGACGACTAAACCTTAATGAAATTACAGAAGCATGTTCACGCCACATAGTGACGGCGATGGAAACGGAGCAAGAAACTTTAAACCGAGCAATTTCAATAAGCAATGCTTGGAAACACCAAGTCAGTGCTTTGTTCAATGGGGGCATAGAGGGGGAACAAATCAAAAAGGATCTACAAAGACTCAAAGCGAGCTCCGGTGATGAAGTCTATTGGCTAATACGAAAGGCGTTTCGTGAAGCGCGAGTGGCTTTGAGGACGAATGTTTATATGAAACCGTGGAATCTTGAAGAAAGAAGAGAAGCAACACTCATGGAACTACTCGGTCCGCTTCCAGAGATAGCCCGACGGCGGCTTCAGGGCAGGCCACGTCGTGACGACTGCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0009267 GO:0009268 GO:0009605 GO:0009628 GO:0009636 GO:0009719 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010243 GO:0010447 GO:0014070 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034198 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0042542 GO:0042594 GO:0046677 GO:0050896 GO:0051716 GO:0060992 GO:0070301 GO:0070887 GO:0071214 GO:0071236 GO:0071310 GO:0071407 GO:0071417 GO:0071467 GO:0071468 GO:0071495 GO:0071496 GO:0072755 GO:0097237 GO:0104004 GO:1901561 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1990451 GO:1990928

KEGG Pathways

Metabolic & Signaling

ko04138 ko04140 ko04141 ko05160 ko05162 ko05164 ko05168 ko05169 map04138 map04140 map04141 map05160 map05162 map05164 map05168 map05169

Pfam Domains

Protein Families

HGTP_anticodon2 Pkinase RWD tRNA-synt_His

Protein Analysis

229

Amino Acids

26.38

Weight (kDa)

5.1

Isoelectric Point (pI)

63.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XH	PF03469	99 - 208	5.5e-09	XH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80970 AT1G80970 AT1G80970 AT1G80970 AT1G80990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	544
AciI	CCGC	2 cut(s)	629, 652
AclWI	GGATC	1 cut(s)	480
AcuI	CTGAAG	2 cut(s)	71, 641
AdeI	CACNNNGTG	2 cut(s)	352, 674
AfiI	CCNNNNNNNGG	1 cut(s)	651
AflIII	ACRYGT	1 cut(s)	255
AgsI	TTSAA	4 cut(s)	90, 399, 439, 590
AjiI	CACGTC	1 cut(s)	671
AluBI	AGCT	2 cut(s)	107, 495
AluI	AGCT	2 cut(s)	107, 495
Alw21I	GWGCWC	1 cut(s)	497
AlwI	GGATC	1 cut(s)	480
AoxI	GGCC	2 cut(s)	286, 665
ApeKI	GCWGC	3 cut(s)	233, 247, 684
AspLEI	GCGC	1 cut(s)	544
AspS9I	GGNCC	2 cut(s)	287, 626
AsuHPI	GGTGA	2 cut(s)	182, 512
AvaII	GGWCC	1 cut(s)	626
BanII	GRGCYC	1 cut(s)	497
BbsI	GAAGAC	2 cut(s)	180, 204
Bbv12I	GWGCWC	1 cut(s)	497
BbvI	GCAGC	3 cut(s)	220, 234, 671
BccI	CCATC	3 cut(s)	161, 278, 355
BceAI	ACGGC	3 cut(s)	48, 372, 665
BfaI	CTAG	2 cut(s)	108, 194
BisI	GCNGC	4 cut(s)	234, 248, 653, 685
BlsI	GCNGC	4 cut(s)	235, 249, 654, 686
Bme18I	GGWCC	1 cut(s)	626
BmgBI	CACGTC	1 cut(s)	671
BmgT120I	GGNCC	2 cut(s)	287, 626
BpiI	GAAGAC	2 cut(s)	180, 204
Bsa29I	ATCGAT	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	578
BsaWI	WCCGGW	1 cut(s)	497
Bsc4I	CCNNNNNNNGG	1 cut(s)	651
Bse3DI	GCAATG	1 cut(s)	412
BseCI	ATCGAT	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	578
BseLI	CCNNNNNNNGG	1 cut(s)	651
BseMI	GCAATG	1 cut(s)	412
BseMII	CTCAG	1 cut(s)	132
BseXI	GCAGC	3 cut(s)	220, 234, 671
Bsh1236I	CGCG	1 cut(s)	544
BshFI	GGCC	2 cut(s)	288, 667
BshVI	ATCGAT	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	497
BsiSI	CCGG	1 cut(s)	498
BslFI	GGGAC	2 cut(s)	31, 318
BslI	CCNNNNNNNGG	1 cut(s)	651
BsmFI	GGGAC	2 cut(s)	31, 318
BsnI	GGCC	2 cut(s)	288, 667
Bsp1286I	GDGCHC	1 cut(s)	497
Bsp143I	GATC	2 cut(s)	204, 472
BspACI	CCGC	2 cut(s)	629, 652
BspANI	GGCC	2 cut(s)	288, 667
BspCNI	CTCAG	1 cut(s)	131
BspDI	ATCGAT	1 cut(s)	207
BspFNI	CGCG	1 cut(s)	544
BspPI	GGATC	1 cut(s)	480
BsrDI	GCAATG	1 cut(s)	412
BssECI	CCNNGG	1 cut(s)	578
BssMI	GATC	2 cut(s)	204, 472
Bst4CI	ACNGT	1 cut(s)	579
Bst6I	CTCTTC	3 cut(s)	117, 147, 592
BstC8I	GCNNGC	4 cut(s)	231, 245, 493, 665
BstDEI	CTNAG	1 cut(s)	118
BstDSI	CCRYGG	1 cut(s)	578
BstFNI	CGCG	1 cut(s)	544
BstHHI	GCGC	1 cut(s)	544
BstKTI	GATC	2 cut(s)	207, 475
BstMBI	GATC	2 cut(s)	204, 472
BstMWI	GCNNNNNNNGC	1 cut(s)	548
BstNSI	RCATGY	2 cut(s)	259, 339
BstUI	CGCG	1 cut(s)	544
BstV1I	GCAGC	3 cut(s)	220, 234, 671
BstV2I	GAAGAC	2 cut(s)	180, 204
BstX2I	RGATCY	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	472
Bsu15I	ATCGAT	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	288, 667
BsuTUI	ATCGAT	1 cut(s)	207
BtgI	CCRYGG	1 cut(s)	578
BtgZI	GCGATG	1 cut(s)	374
BtrI	CACGTC	1 cut(s)	671
BtsIMutI	CAGTG	1 cut(s)	433
Cac8I	GCNNGC	4 cut(s)	231, 245, 493, 665
CfoI	GCGC	1 cut(s)	544
Cfr13I	GGNCC	2 cut(s)	287, 626
ClaI	ATCGAT	1 cut(s)	207
CpoI	CGGWCCG	1 cut(s)	626
CspI	CGGWCCG	1 cut(s)	626
CviAII	CATG	3 cut(s)	256, 336, 613
CviJI	RGCY	9 cut(s)	107, 247, 288, 495, 517, 551, 644, 655, 667
CviKI_1	RGCY	9 cut(s)	107, 247, 288, 495, 517, 551, 644, 655, 667
DdeI	CTNAG	1 cut(s)	118
DpnI	GATC	2 cut(s)	206, 474
DpnII	GATC	2 cut(s)	204, 472
DraI	TTTAAA	2 cut(s)	63, 384
DraIII	CACNNNGTG	2 cut(s)	352, 674
Eam1104I	CTCTTC	3 cut(s)	117, 147, 592
EarI	CTCTTC	3 cut(s)	117, 147, 592
Ecl136II	GAGCTC	1 cut(s)	495
Eco24I	GRGCYC	1 cut(s)	497
Eco47I	GGWCC	1 cut(s)	626
Eco53kI	GAGCTC	1 cut(s)	495
Eco57I	CTGAAG	2 cut(s)	71, 641
EcoICRI	GAGCTC	1 cut(s)	495
EcoT38I	GRGCYC	1 cut(s)	497
FaeI	CATG	3 cut(s)	259, 339, 616
FaiI	YATR	7 cut(s)	257, 337, 350, 449, 570, 572, 614
FalI	AAGNNNNNCTT	4 cut(s)	213, 245, 394, 426
FaqI	GGGAC	2 cut(s)	31, 318
FatI	CATG	3 cut(s)	255, 335, 612
Fnu4HI	GCNGC	4 cut(s)	234, 248, 653, 685
FriOI	GRGCYC	1 cut(s)	497
Fsp4HI	GCNGC	4 cut(s)	234, 248, 653, 685
FspBI	CTAG	2 cut(s)	108, 194
GlaI	GCGC	1 cut(s)	543
GluI	GCNGC	4 cut(s)	234, 248, 653, 685
HaeIII	GGCC	2 cut(s)	288, 667
HapII	CCGG	1 cut(s)	498
HhaI	GCGC	1 cut(s)	544
Hin1II	CATG	3 cut(s)	259, 339, 616
Hin6I	GCGC	1 cut(s)	542
HinP1I	GCGC	1 cut(s)	542
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HinfI	GANTC	3 cut(s)	56, 483, 583
HpaII	CCGG	1 cut(s)	498
HphI	GGTGA	2 cut(s)	182, 512
Hpy166II	GTNNAC	2 cut(s)	30, 341
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	6 cut(s)	90, 194, 536, 587, 635, 674
Hpy8I	GTNNAC	2 cut(s)	30, 341
Hpy99I	CGWCG	2 cut(s)	651, 675
HpyAV	CCTTC	2 cut(s)	46, 289
HpyCH4III	ACNGT	1 cut(s)	579
HpyCH4IV	ACGT	2 cut(s)	177, 670
HpyCH4V	TGCA	2 cut(s)	243, 276
HpyF10VI	GCNNNNNNNGC	1 cut(s)	548
HpyF3I	CTNAG	1 cut(s)	118
HpySE526I	ACGT	2 cut(s)	177, 670
Hsp92II	CATG	3 cut(s)	259, 339, 616
HspAI	GCGC	1 cut(s)	542
Kzo9I	GATC	2 cut(s)	204, 472
LmnI	GCTCC	2 cut(s)	370, 500
LpnPI	CCDG	7 cut(s)	62, 229, 303, 511, 644, 648, 649
Lsp1109I	GCAGC	3 cut(s)	220, 234, 671
MaeI	CTAG	2 cut(s)	108, 194
MaeII	ACGT	2 cut(s)	177, 670
MaeIII	GTNAC	3 cut(s)	14, 352, 674
MalI	GATC	2 cut(s)	206, 474
MboI	GATC	2 cut(s)	204, 472
MflI	RGATCY	1 cut(s)	472
MhlI	GDGCHC	1 cut(s)	497
MluCI	AATT	4 cut(s)	39, 72, 324, 393
MlyI	GAGTC	2 cut(s)	65, 477
MnlI	CCTC	5 cut(s)	18, 127, 148, 445, 549
MseI	TTAA	5 cut(s)	42, 62, 252, 318, 383
MspI	CCGG	1 cut(s)	498
MvnI	CGCG	1 cut(s)	544
MwoI	GCNNNNNNNGC	1 cut(s)	548
NdeII	GATC	2 cut(s)	204, 472
NlaIII	CATG	3 cut(s)	259, 339, 616
NmuCI	GTSAC	3 cut(s)	14, 352, 674
NspI	RCATGY	2 cut(s)	259, 339
PciI	ACATGT	1 cut(s)	255
PcsI	WCGNNNNNNNCGW	1 cut(s)	541
PfeI	GAWTC	1 cut(s)	583
PkrI	GCNGC	4 cut(s)	235, 249, 654, 686
PleI	GAGTC	2 cut(s)	64, 477
PpsI	GAGTC	2 cut(s)	64, 477
PscI	ACATGT	1 cut(s)	255
Psp124BI	GAGCTC	1 cut(s)	497
PspPI	GGNCC	2 cut(s)	287, 626
PsuI	RGATCY	1 cut(s)	472
Rsr2I	CGGWCCG	1 cut(s)	626
RsrII	CGGWCCG	1 cut(s)	626
SacI	GAGCTC	1 cut(s)	497
SaqAI	TTAA	5 cut(s)	42, 62, 252, 318, 383
SatI	GCNGC	4 cut(s)	234, 248, 653, 685
Sau3AI	GATC	2 cut(s)	204, 472
Sau96I	GGNCC	2 cut(s)	287, 626
SchI	GAGTC	2 cut(s)	65, 477
SduI	GDGCHC	1 cut(s)	497
SetI	ASST	8 cut(s)	29, 109, 119, 180, 281, 318, 497, 673
SinI	GGWCC	1 cut(s)	626
Sse9I	AATT	4 cut(s)	39, 72, 324, 393
SsiI	CCGC	2 cut(s)	629, 652
SspMI	CTAG	2 cut(s)	108, 194
SstI	GAGCTC	1 cut(s)	497
TaaI	ACNGT	1 cut(s)	579
TaiI	ACGT	2 cut(s)	180, 673
TaqI	TCGA	2 cut(s)	207, 282
TaqII	GACCGA	1 cut(s)	614
TasI	AATT	4 cut(s)	39, 72, 324, 393
TauI	GCSGC	1 cut(s)	655
TfiI	GAWTC	1 cut(s)	583
Tru1I	TTAA	5 cut(s)	42, 62, 252, 318, 383
Tru9I	TTAA	5 cut(s)	42, 62, 252, 318, 383
TscAI	CASTG	1 cut(s)	433
TseFI	GTSAC	3 cut(s)	14, 352, 674
TseI	GCWGC	3 cut(s)	233, 247, 684
Tsp45I	GTSAC	3 cut(s)	14, 352, 674
TspDTI	ATGAA	3 cut(s)	336, 519, 587
TspGWI	ACGGA	1 cut(s)	383
TspRI	CASTG	1 cut(s)	433
VpaK11BI	GGWCC	1 cut(s)	626
XbaI	TCTAGA	1 cut(s)	193
XceI	RCATGY	2 cut(s)	259, 339
XspI	CTAG	2 cut(s)	108, 194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.