AT2G18320

Leucine Rich Repeat

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
7956220 .. 7957584
1365 bp
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UTR
Exon/CDS
Intron
AT2G18320.1

Sequence Viewer

Length: 321 bp
ATGGCTCTTCTAGCCATTGATCTCGATATGTTTGGGCATGGATCGGCGGGCCAAGTATTGGGCCGGACCGATGTGGATCGGGTTGAGTATCAATATAGCACAAAGTCATTACTTTCAATCTACATATTTTATGAAGAGACTTGCGGTTTCTTCATTGATGAAGAGAAGAAAGTCTTCGTGGTTTTTGAGTTAGATGAATCTCAAGCCTACAAATATGCTTACATCATTGGAGAGAATATATGCTTGAAAAAATTGGATCTTGGAGAAGTTAGAACATTTTCTTGCCCAATTGTGTGCTCCAGCTCTTATGTTCCAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

106

Amino Acids

12.02

Weight (kDa)

4.52

Isoelectric Point (pI)

35.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 41 - 106 1.3e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0021932)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18320 AT2G27540 AT5G52080 AT5G53410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 58
AciI CCGC 2 cut(s) 47, 144
AclWI GGATC 3 cut(s) 49, 84, 264
AfiI CCNNNNNNNGG 1 cut(s) 58
AgsI TTSAA 2 cut(s) 117, 247
AluBI AGCT 2 cut(s) 303, 318
AluI AGCT 2 cut(s) 303, 318
Alw21I GWGCWC 1 cut(s) 299
Alw26I GTCTC 1 cut(s) 131
AlwI GGATC 3 cut(s) 49, 84, 264
AoxI GGCC 2 cut(s) 49, 61
Asp700I GAANNNNTTC 2 cut(s) 173, 277
AspS9I GGNCC 3 cut(s) 49, 61, 66
AvaII GGWCC 1 cut(s) 66
BbsI GAAGAC 1 cut(s) 166
Bbv12I GWGCWC 1 cut(s) 299
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 1 cut(s) 11
Bme18I GGWCC 1 cut(s) 66
BmgT120I GGNCC 3 cut(s) 49, 61, 66
BpiI GAAGAC 1 cut(s) 166
BpmI CTGGAG 1 cut(s) 283
BpuEI CTTGAG 1 cut(s) 186
BsaBI GATNNNNATC 1 cut(s) 75
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse8I GATNNNNATC 1 cut(s) 75
BseJI GATNNNNATC 1 cut(s) 75
BseLI CCNNNNNNNGG 1 cut(s) 58
BshFI GGCC 2 cut(s) 51, 63
BsiHKAI GWGCWC 1 cut(s) 299
BsiSI CCGG 1 cut(s) 64
BslI CCNNNNNNNGG 1 cut(s) 58
BsmAI GTCTC 1 cut(s) 131
BsnI GGCC 2 cut(s) 51, 63
Bsp1286I GDGCHC 1 cut(s) 299
Bsp143I GATC 4 cut(s) 19, 41, 76, 256
BspACI CCGC 2 cut(s) 47, 144
BspANI GGCC 2 cut(s) 51, 63
BspPI GGATC 3 cut(s) 49, 84, 264
BspQI GCTCTTC 1 cut(s) 12
BssMI GATC 4 cut(s) 19, 41, 76, 256
Bst6I CTCTTC 3 cut(s) 12, 129, 156
BstC8I GCNNGC 1 cut(s) 49
BstKTI GATC 4 cut(s) 22, 44, 79, 259
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 4 cut(s) 19, 41, 76, 256
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstV2I GAAGAC 1 cut(s) 166
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BsuRI GGCC 2 cut(s) 51, 63
Cac8I GCNNGC 1 cut(s) 49
Cfr13I GGNCC 3 cut(s) 49, 61, 66
CpoI CGGWCCG 1 cut(s) 66
CspI CGGWCCG 1 cut(s) 66
CviAII CATG 1 cut(s) 38
CviJI RGCY 7 cut(s) 5, 14, 51, 63, 206, 303, 318
CviKI_1 RGCY 7 cut(s) 5, 14, 51, 63, 206, 303, 318
DpnI GATC 4 cut(s) 21, 43, 78, 258
DpnII GATC 4 cut(s) 19, 41, 76, 256
Eam1104I CTCTTC 3 cut(s) 12, 129, 156
EarI CTCTTC 3 cut(s) 12, 129, 156
Eco47I GGWCC 1 cut(s) 66
FaeI CATG 1 cut(s) 41
FaiI YATR 9 cut(s) 29, 39, 96, 125, 132, 216, 239, 241, 309
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FatI CATG 1 cut(s) 37
FauI CCCGC 1 cut(s) 40
FspBI CTAG 1 cut(s) 11
GsuI CTGGAG 1 cut(s) 283
HaeIII GGCC 2 cut(s) 51, 63
HapII CCGG 1 cut(s) 64
Hin1II CATG 1 cut(s) 41
HinfI GANTC 1 cut(s) 197
HpaII CCGG 1 cut(s) 64
Hpy188III TCNNGA 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
Hsp92II CATG 1 cut(s) 41
Kzo9I GATC 4 cut(s) 19, 41, 76, 256
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 1 cut(s) 302
LpnPI CCDG 2 cut(s) 77, 313
MaeI CTAG 1 cut(s) 11
MalI GATC 4 cut(s) 21, 43, 78, 258
MboI GATC 4 cut(s) 19, 41, 76, 256
MboII GAAGA 5 cut(s) 142, 146, 166, 173, 178
MfeI CAATTG 1 cut(s) 288
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 299
MluCI AATT 2 cut(s) 251, 288
MroXI GAANNNNTTC 2 cut(s) 173, 277
MspI CCGG 1 cut(s) 64
MunI CAATTG 1 cut(s) 288
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 4 cut(s) 19, 41, 76, 256
NlaIII CATG 1 cut(s) 41
PciSI GCTCTTC 1 cut(s) 12
PdmI GAANNNNTTC 2 cut(s) 173, 277
PfeI GAWTC 1 cut(s) 197
PflMI CCANNNNNTGG 1 cut(s) 58
PspPI GGNCC 3 cut(s) 49, 61, 66
PsuI RGATCY 1 cut(s) 256
Rsr2I CGGWCCG 1 cut(s) 66
RsrII CGGWCCG 1 cut(s) 66
SapI GCTCTTC 1 cut(s) 12
Sau3AI GATC 4 cut(s) 19, 41, 76, 256
Sau96I GGNCC 3 cut(s) 49, 61, 66
SduI GDGCHC 1 cut(s) 299
SetI ASST 2 cut(s) 305, 320
SinI GGWCC 1 cut(s) 66
SmlI CTYRAG 1 cut(s) 201
SmoI CTYRAG 1 cut(s) 201
Sse9I AATT 2 cut(s) 251, 288
SsiI CCGC 2 cut(s) 47, 144
SspMI CTAG 1 cut(s) 11
TaqI TCGA 1 cut(s) 24
TaqII GACCGA 1 cut(s) 83
TasI AATT 2 cut(s) 251, 288
TfiI GAWTC 1 cut(s) 197
TspDTI ATGAA 4 cut(s) 142, 147, 174, 210
Van91I CCANNNNNTGG 1 cut(s) 58
VpaK11BI GGWCC 1 cut(s) 66
XmnI GAANNNNTTC 2 cut(s) 173, 277
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.