AT2G26760

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0023568
Physical Location & Seq
Forward (+)
11401118 .. 11403433
2316 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G26760.1

Sequence Viewer

Length: 1164 bp
ATGGCGTCTTCTAGAGTCTCTGATCTTCCTCATCAACGTGGAATCGCAGGTGAAATCAAACCGAAGAATGTTGCAGGACATGGAAGACAAAACCGGAAAGTTCTTGGAGACATTGGTAATCTTGTCACTGGTCGTGATGTTGCAACAGGAAAGGATGTTGCGAAGAAGGCGAAACAACCACAGCAGCAGACAAAAGCTGAGGTTATTGTCATTAGCCCTGATGAAAACGAGAAATGCAAACCACATTTTAGCAGAAGAACTCATATAAGAGGAACCAAGACTTTTACCGCAACCTTAAGAGCTCGAAGCAAGGCTGCGAGTGGACTGAAGGATGCTGTGATCGACATTGATGCTGTGGATGCTAACAATGAACTGGCTGCTGTGGAATACGTAGAGGACATCTTCAAGTTTTATAGGACTGTGGAAGAGGAAGGAGGGATTAAAGACTATATAGGATCACAACCTGAGATAAACGAGAAGATGAGATCGATTCTGATAGATTGGCTTGTAGATGTTCACAGGAAGTTTGAGTTGATGCCAGAGACGCTATACTTAACCATTAACCTCGTTGATCGGTTTCTATCTTTGACAATGGTTCATAGAAGAGAGCTTCAGCTGTTGGGACTAGGTGCTATGCTTATAGCTTGCAAGTATGAGGAGATTTGGGCTCCTGAGGTTAATGATTTCGTCTGTATTTCGGACAATGCCTATAACAGGAAACAGGTTTTGGCTATGGAGAAATCGATCTTAGGACAAGTTGAATGGTACATCACTGTTCCAACTCCTTATGTGTTCCTTGCGCGATACGTTAAAGCTGCGGTTCCATGTGATGCTGAGATGGAGAAATTGGTGTTCTACTTGGCTGAGCTGGGACTTATGCAGTATCCTATAGTTGTCTTAAACCGTCCATCGATGCTGGCTGCATCAGCGGTTTATGCTGCGCGTCAGATCCTTAAGAAGACGCCATTTTGGACTGAGACCTTGAAACATCACACTGGCTACTCGGAAGATGAGATTATGGAGCATGCGAAAATGCTGATGAAGTTAAGGGACTCGGCTTCAGAGAGTAAGCTAATAGCAGTGTTCAAGAAATACTCTGTCTCAGAAAACGCTGAAGTTGCTCTTCTTCCTTCGCTTGACGACTTCTCTGTTTCTTGTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

387

Amino Acids

43.57

Weight (kDa)

7.12

Isoelectric Point (pI)

38.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 133 - 257 5.5e-47 Cyclin, N-terminal domain
Cyclin_C PF02984 260 - 378 4.4e-34 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023568)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26760
prunus_persica Prupe.4G269600_v2.0.a1
pyrus_communis pycom5153684g00160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 38
Acc36I ACCTGC 1 cut(s) 38
AccII CGCG 2 cut(s) 802, 943
AciI CCGC 3 cut(s) 288, 818, 929
AclWI GGATC 2 cut(s) 463, 943
AcuI CTGAAG 4 cut(s) 347, 596, 1044, 1134
AcyI GRCGYC 2 cut(s) 5, 962
AfaI GTAC 1 cut(s) 767
AfiI CCNNNNNNNGG 1 cut(s) 714
AflII CTTAAG 2 cut(s) 295, 953
AgsI TTSAA 4 cut(s) 406, 761, 985, 1087
AjuI GAANNNNNNNTTGG 2 cut(s) 710, 742
AluBI AGCT 8 cut(s) 197, 302, 610, 616, 644, 815, 868, 1072
AluI AGCT 8 cut(s) 197, 302, 610, 616, 644, 815, 868, 1072
Alw21I GWGCWC 1 cut(s) 304
Alw26I GTCTC 5 cut(s) 22, 102, 536, 971, 1105
AlwI GGATC 2 cut(s) 463, 943
ApeKI GCWGC 6 cut(s) 184, 314, 377, 815, 920, 938
AspLEI GCGC 2 cut(s) 802, 943
AsuHPI GGTGA 1 cut(s) 62
AxyI CCTNAGG 1 cut(s) 672
BanII GRGCYC 2 cut(s) 304, 670
BbsI GAAGAC 2 cut(s) 91, 965
Bbv12I GWGCWC 1 cut(s) 304
BbvCI CCTCAGC 1 cut(s) 198
BbvI GCAGC 6 cut(s) 196, 301, 364, 802, 907, 925
BccI CCATC 2 cut(s) 832, 916
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BciVI GTATCC 1 cut(s) 894
BcoDI GTCTC 5 cut(s) 22, 102, 536, 971, 1105
BfaI CTAG 2 cut(s) 12, 626
BfmI CTRYAG 1 cut(s) 888
BfrI CTTAAG 2 cut(s) 295, 953
BfuAI ACCTGC 1 cut(s) 38
BfuI GTATCC 1 cut(s) 894
BisI GCNGC 6 cut(s) 185, 315, 378, 816, 921, 939
BlpI GCTNAGC 1 cut(s) 864
BlsI GCNGC 6 cut(s) 186, 316, 379, 817, 922, 940
BmiI GGNNCC 3 cut(s) 274, 669, 822
BmsI GCATC 7 cut(s) 322, 340, 349, 525, 820, 903, 932
BpiI GAAGAC 2 cut(s) 91, 965
Bpu10I CCTNAGC 1 cut(s) 198
Bpu1102I GCTNAGC 1 cut(s) 864
Bsa29I ATCGAT 3 cut(s) 488, 743, 911
BsaAI YACGTR 1 cut(s) 391
BsaHI GRCGYC 2 cut(s) 5, 962
BsaI GGTCTC 1 cut(s) 971
BsaWI WCCGGW 1 cut(s) 93
Bsc4I CCNNNNNNNGG 1 cut(s) 714
Bse1I ACTGG 3 cut(s) 133, 378, 1000
Bse21I CCTNAGG 1 cut(s) 672
BseCI ATCGAT 3 cut(s) 488, 743, 911
BseGI GGATG 3 cut(s) 160, 337, 364
BseLI CCNNNNNNNGG 1 cut(s) 714
BseMII CTCAG 7 cut(s) 189, 456, 663, 825, 855, 966, 1116
BseNI ACTGG 3 cut(s) 133, 378, 1000
BseRI GAGGAG 1 cut(s) 671
BseXI GCAGC 6 cut(s) 196, 301, 364, 802, 907, 925
BseYI CCCAGC 1 cut(s) 868
Bsh1236I CGCG 2 cut(s) 802, 943
BshVI ATCGAT 3 cut(s) 488, 743, 911
BsiHKAI GWGCWC 1 cut(s) 304
BsiSI CCGG 1 cut(s) 94
BslFI GGGAC 3 cut(s) 636, 885, 1064
BslI CCNNNNNNNGG 1 cut(s) 714
BsmAI GTCTC 5 cut(s) 22, 102, 536, 971, 1105
BsmBI CGTCTC 1 cut(s) 536
BsmFI GGGAC 3 cut(s) 636, 885, 1064
Bso31I GGTCTC 1 cut(s) 971
Bsp1286I GDGCHC 2 cut(s) 304, 670
Bsp143I GATC 7 cut(s) 22, 339, 455, 485, 571, 744, 948
Bsp1720I GCTNAGC 1 cut(s) 864
BspACI CCGC 3 cut(s) 288, 818, 929
BspCNI CTCAG 7 cut(s) 190, 457, 664, 826, 856, 967, 1115
BspDI ATCGAT 3 cut(s) 488, 743, 911
BspFNI CGCG 2 cut(s) 802, 943
BspLI GGNNCC 3 cut(s) 274, 669, 822
BspMI ACCTGC 1 cut(s) 38
BspPI GGATC 2 cut(s) 463, 943
BspQI GCTCTTC 1 cut(s) 1128
BspTI CTTAAG 2 cut(s) 295, 953
BspTNI GGTCTC 1 cut(s) 971
BsrI ACTGG 3 cut(s) 133, 378, 1000
BssMI GATC 7 cut(s) 22, 339, 455, 485, 571, 744, 948
BssNI GRCGYC 2 cut(s) 5, 962
Bst4CI ACNGT 3 cut(s) 421, 775, 905
Bst6I CTCTTC 3 cut(s) 420, 598, 1128
BstACI GRCGYC 2 cut(s) 5, 962
BstAFI CTTAAG 2 cut(s) 295, 953
BstBAI YACGTR 1 cut(s) 391
BstC8I GCNNGC 3 cut(s) 646, 918, 1026
BstDEI CTNAG 8 cut(s) 198, 465, 672, 748, 834, 864, 975, 1102
BstENI CCTNNNNNAGG 1 cut(s) 712
BstF5I GGATG 3 cut(s) 160, 337, 364
BstFNI CGCG 2 cut(s) 802, 943
BstHHI GCGC 2 cut(s) 802, 943
BstKTI GATC 7 cut(s) 25, 342, 458, 488, 574, 747, 951
BstMAI GTCTC 5 cut(s) 22, 102, 536, 971, 1105
BstMBI GATC 7 cut(s) 22, 339, 455, 485, 571, 744, 948
BstMWI GCNNNNNNNGC 6 cut(s) 167, 359, 544, 926, 935, 1118
BstNSI RCATGY 1 cut(s) 1028
BstSFI CTRYAG 1 cut(s) 888
BstSNI TACGTA 1 cut(s) 391
BstUI CGCG 2 cut(s) 802, 943
BstV1I GCAGC 6 cut(s) 196, 301, 364, 802, 907, 925
BstV2I GAAGAC 2 cut(s) 91, 965
BstX2I RGATCY 1 cut(s) 948
BstYI RGATCY 1 cut(s) 948
Bsu15I ATCGAT 3 cut(s) 488, 743, 911
Bsu36I CCTNAGG 1 cut(s) 672
BsuI GTATCC 1 cut(s) 894
BsuTUI ATCGAT 3 cut(s) 488, 743, 911
BtsCI GGATG 3 cut(s) 160, 337, 364
BtsI GCAGTG 1 cut(s) 1086
BtsIMutI CAGTG 4 cut(s) 126, 771, 993, 1086
BveI ACCTGC 1 cut(s) 38
Cac8I GCNNGC 3 cut(s) 646, 918, 1026
CfoI GCGC 2 cut(s) 802, 943
ClaI ATCGAT 3 cut(s) 488, 743, 911
CseI GACGC 3 cut(s) 553, 932, 970
Csp6I GTAC 1 cut(s) 766
CviAII CATG 4 cut(s) 80, 825, 1025, 1161
CviQI GTAC 1 cut(s) 766
DdeI CTNAG 8 cut(s) 198, 465, 672, 748, 834, 864, 975, 1102
DpnI GATC 7 cut(s) 24, 341, 457, 487, 573, 746, 950
DpnII GATC 7 cut(s) 22, 339, 455, 485, 571, 744, 948
Eam1104I CTCTTC 3 cut(s) 420, 598, 1128
EarI CTCTTC 3 cut(s) 420, 598, 1128
Ecl136II GAGCTC 1 cut(s) 302
Eco105I TACGTA 1 cut(s) 391
Eco24I GRGCYC 2 cut(s) 304, 670
Eco31I GGTCTC 1 cut(s) 971
Eco53kI GAGCTC 1 cut(s) 302
Eco57I CTGAAG 4 cut(s) 347, 596, 1044, 1134
Eco81I CCTNAGG 1 cut(s) 672
EcoICRI GAGCTC 1 cut(s) 302
EcoNI CCTNNNNNAGG 1 cut(s) 712
EcoT38I GRGCYC 2 cut(s) 304, 670
Esp3I CGTCTC 1 cut(s) 536
FaeI CATG 4 cut(s) 83, 828, 1028, 1164
FalI AAGNNNNNCTT 2 cut(s) 1107, 1139
FaqI GGGAC 3 cut(s) 636, 885, 1064
FatI CATG 4 cut(s) 79, 824, 1024, 1160
Fnu4HI GCNGC 6 cut(s) 185, 315, 378, 816, 921, 939
FokI GGATG 3 cut(s) 167, 344, 371
FriOI GRGCYC 2 cut(s) 304, 670
Fsp4HI GCNGC 6 cut(s) 185, 315, 378, 816, 921, 939
FspBI CTAG 2 cut(s) 12, 626
GlaI GCGC 2 cut(s) 801, 942
GluI GCNGC 6 cut(s) 185, 315, 378, 816, 921, 939
GsaI CCCAGC 1 cut(s) 872
HapII CCGG 1 cut(s) 94
HgaI GACGC 3 cut(s) 553, 932, 970
HhaI GCGC 2 cut(s) 802, 943
Hin1I GRCGYC 2 cut(s) 5, 962
Hin1II CATG 4 cut(s) 83, 828, 1028, 1164
Hin6I GCGC 2 cut(s) 800, 941
HinP1I GCGC 2 cut(s) 800, 941
HinfI GANTC 4 cut(s) 15, 42, 490, 1052
HpaII CCGG 1 cut(s) 94
HphI GGTGA 1 cut(s) 62
Hpy166II GTNNAC 2 cut(s) 323, 517
Hpy188I TCNGA 7 cut(s) 22, 495, 700, 948, 1006, 1063, 1105
Hpy188III TCNNGA 4 cut(s) 12, 134, 671, 1087
Hpy8I GTNNAC 2 cut(s) 323, 517
HpyAV CCTTC 4 cut(s) 160, 322, 425, 1140
HpyCH4III ACNGT 3 cut(s) 421, 775, 905
HpyCH4IV ACGT 3 cut(s) 37, 390, 807
HpyCH4V TGCA 7 cut(s) 74, 143, 237, 648, 880, 923, 1160
HpyF10VI GCNNNNNNNGC 6 cut(s) 167, 359, 544, 926, 935, 1118
HpyF3I CTNAG 8 cut(s) 198, 465, 672, 748, 834, 864, 975, 1102
HpySE526I ACGT 3 cut(s) 37, 390, 807
Hsp92I GRCGYC 2 cut(s) 5, 962
Hsp92II CATG 4 cut(s) 83, 828, 1028, 1164
HspAI GCGC 2 cut(s) 800, 941
Kzo9I GATC 7 cut(s) 22, 339, 455, 485, 571, 744, 948
LguI GCTCTTC 1 cut(s) 1128
LmnI GCTCC 2 cut(s) 673, 1021
Lsp1109I GCAGC 6 cut(s) 196, 301, 364, 802, 907, 925
LweI GCATC 7 cut(s) 322, 340, 349, 525, 820, 903, 932
MaeI CTAG 2 cut(s) 12, 626
MaeII ACGT 3 cut(s) 37, 390, 807
MaeIII GTNAC 1 cut(s) 124
MalI GATC 7 cut(s) 24, 341, 457, 487, 573, 746, 950
MboI GATC 7 cut(s) 22, 339, 455, 485, 571, 744, 948
MflI RGATCY 1 cut(s) 948
MhlI GDGCHC 2 cut(s) 304, 670
MluCI AATT 1 cut(s) 845
MlyI GAGTC 2 cut(s) 24, 1046
MmeI TCCRAC 1 cut(s) 803
MnlI CCTC 9 cut(s) 39, 193, 263, 388, 421, 428, 575, 649, 667
MseI TTAA 9 cut(s) 296, 441, 554, 561, 678, 810, 899, 954, 1046
MslI CAYNNNNRTG 1 cut(s) 36
MspA1I CMGCKG 2 cut(s) 616, 929
MspCI CTTAAG 2 cut(s) 295, 953
MspI CCGG 1 cut(s) 94
MvnI CGCG 2 cut(s) 802, 943
MwoI GCNNNNNNNGC 6 cut(s) 167, 359, 544, 926, 935, 1118
NdeII GATC 7 cut(s) 22, 339, 455, 485, 571, 744, 948
NlaIII CATG 4 cut(s) 83, 828, 1028, 1164
NlaIV GGNNCC 3 cut(s) 274, 669, 822
NmeAIII GCCGAG 1 cut(s) 1034
NmuCI GTSAC 1 cut(s) 124
NspI RCATGY 1 cut(s) 1028
PaeI GCATGC 1 cut(s) 1028
PaqCI CACCTGC 1 cut(s) 38
PciSI GCTCTTC 1 cut(s) 1128
PfeI GAWTC 2 cut(s) 42, 490
PkrI GCNGC 6 cut(s) 186, 316, 379, 817, 922, 940
PleI GAGTC 2 cut(s) 23, 1046
PpsI GAGTC 2 cut(s) 23, 1046
Ppu21I YACGTR 1 cut(s) 391
Psp124BI GAGCTC 1 cut(s) 304
PspFI CCCAGC 1 cut(s) 868
PspN4I GGNNCC 3 cut(s) 274, 669, 822
PsuI RGATCY 1 cut(s) 948
PvuII CAGCTG 1 cut(s) 616
RsaI GTAC 1 cut(s) 767
RsaNI GTAC 1 cut(s) 766
RseI CAYNNNNRTG 1 cut(s) 36
SacI GAGCTC 1 cut(s) 304
SapI GCTCTTC 1 cut(s) 1128
SaqAI TTAA 9 cut(s) 296, 441, 554, 561, 678, 810, 899, 954, 1046
SatI GCNGC 6 cut(s) 185, 315, 378, 816, 921, 939
Sau3AI GATC 7 cut(s) 22, 339, 455, 485, 571, 744, 948
SchI GAGTC 2 cut(s) 24, 1046
SduI GDGCHC 2 cut(s) 304, 670
SfaNI GCATC 7 cut(s) 322, 340, 349, 525, 820, 903, 932
SfcI CTRYAG 1 cut(s) 888
SmiMI CAYNNNNRTG 1 cut(s) 36
SmlI CTYRAG 2 cut(s) 295, 953
SmoI CTYRAG 2 cut(s) 295, 953
SnaBI TACGTA 1 cut(s) 391
SphI GCATGC 1 cut(s) 1028
Sse9I AATT 1 cut(s) 845
SsiI CCGC 3 cut(s) 288, 818, 929
SspMI CTAG 2 cut(s) 12, 626
SstI GAGCTC 1 cut(s) 304
TaaI ACNGT 3 cut(s) 421, 775, 905
TaiI ACGT 3 cut(s) 40, 393, 810
TaqI TCGA 5 cut(s) 304, 342, 488, 743, 911
TasI AATT 1 cut(s) 845
TfiI GAWTC 2 cut(s) 42, 490
Tru1I TTAA 9 cut(s) 296, 441, 554, 561, 678, 810, 899, 954, 1046
Tru9I TTAA 9 cut(s) 296, 441, 554, 561, 678, 810, 899, 954, 1046
TscAI CASTG 4 cut(s) 133, 778, 1000, 1086
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 6 cut(s) 184, 314, 377, 815, 920, 938
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 4 cut(s) 237, 384, 587, 1055
TspRI CASTG 4 cut(s) 133, 778, 1000, 1086
Vha464I CTTAAG 2 cut(s) 295, 953
XagI CCTNNNNNAGG 1 cut(s) 712
XbaI TCTAGA 1 cut(s) 11
XceI RCATGY 1 cut(s) 1028
XspI CTAG 2 cut(s) 12, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.