Prupe.4G269600_v2.0.a1

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0023568
Physical Location & Seq
Forward (+)
21517057 .. 21519910
2854 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G269600.1

Sequence Viewer

Length: 1227 bp
ATGGCTTCCAGAGCCGTTGTTGTTGTGCCTCACCAACTACAAAGAGAGGAAGGCAAGCAGAAGAAGGTAGCAGGAGAGGGGAAAAATAGGCAAGTTCTTCAAGACATTAGTAACCTAGTAGTAACTGCTCCTGCTGCCCAAGGGAAGATCAATGCTAAGCTTCCTGCCCCATCAGAGAAGAACAAGAAACCGGTCATAGGAATAATTAATGGGGGGCCGACGGCTGGAAAATCAGGTGTTGCGAAGAAGGCTGAGGCAGCTGTAAATGAGAAGAGTGCTGTTAGTGGAAGGAAATCTAGAGAAGGAGCCTCAAGGAAGAATGCCAGGGCCTTTACATCAATTCTCAGTGCCCGAAGCAAAGCTGCTTGTGGACTCACTAGTAAGCCAAAGGATCCAAAAGTGGACATTGATGCAGCTGATGCTGATAATGAGTTGGCTGTAGTTGAATATTTGGATGAAATCTACCAGTTTTACAAGCTCACAGAAGATGAGAATCGCGTGCATGAGTACATGGCTTTACAGCCAGAAATAAATGCCAAGATGAGATCAATCCTTGTAGACTGGTTGATAGAAGTTCATCACAAATTTGAACTCATGCCAGAAACCCTCTATCTTACCATAAACCTTGTTGATCGATTCCTTTCGGTTAAAGTTGTACCAAGGAGGGAGCTTCAGTTAGTTGGCATCAGCTCAATGCTTCTTGCAAGCAAATATGAAGAAATTTGGGCACCAGAGGTCAACGACTTTGTCTGCATTTCAGACAATGCTTATGGTAAAGAAAAGGTGTTGGTGATGGAGAAAGCAATCTTGGGAAAGCTGGGATGGTGCCTAACAGTTCCTACAACTTATGTCTTCCTGGTGCGCTATATCAAAGCATCATCTGCTCCATCTGATGATGAGTTGATGGAGAATATGGTGTATTTTCTGGCTGAACTGAGTCTGATGCACTATTCTGCTACGATTCTCTACTGCCCTTCAATGATGGCTGCTTCGGCTGTTTATGTTGCTCGATGTACCCTTGACAGGACCCCTTTCTGGACTGAGACTCTCAAGCATCATACTGGCTATTCTGAAGATGAGCTGATGGACTGCGCAAAGCTGTTCCACACTTTTCATTCTGCGGCTGCAGATAGTAAGCTCAAGGCAGTCTATAACAAGTTCTGCAGCCCACAGCATGGTGCCGTGGCTCTTCTTTCACCGGCCGGTGGTAACCTTTCCGCCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

409

Amino Acids

44.97

Weight (kDa)

8.48

Isoelectric Point (pI)

42.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023568)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26760
prunus_persica Prupe.4G269600_v2.0.a1
pyrus_communis pycom5153684g00160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1093
AccB1I GGYRCC 3 cut(s) 727, 825, 1178
AccB7I CCANNNNNTGG 1 cut(s) 1175
AccI GTMKAC 1 cut(s) 558
AccII CGCG 1 cut(s) 498
AciI CCGC 2 cut(s) 1121, 1218
AclWI GGATC 2 cut(s) 386, 399
AcoI YGGCCR 1 cut(s) 1200
AcsI RAATTY 2 cut(s) 584, 720
AcuI CTGAAG 2 cut(s) 656, 1092
AfaI GTAC 3 cut(s) 509, 657, 1015
AfiI CCNNNNNNNGG 6 cut(s) 197, 224, 1023, 1035, 1175, 1205
AgeI ACCGGT 1 cut(s) 190
AgsI TTSAA 4 cut(s) 101, 446, 590, 978
AhlI ACTAGT 1 cut(s) 377
AjnI CCWGG 2 cut(s) 323, 855
AjuI GAANNNNNNNTTGG 2 cut(s) 791, 823
Alw26I GTCTC 1 cut(s) 1037
AlwI GGATC 2 cut(s) 386, 399
AoxI GGCC 3 cut(s) 215, 327, 1200
ApeKI GCWGC 7 cut(s) 134, 257, 362, 413, 986, 1124, 1164
ApoI RAATTY 2 cut(s) 584, 720
AseI ATTAAT 1 cut(s) 207
AsiGI ACCGGT 1 cut(s) 190
AspLEI GCGC 2 cut(s) 864, 1094
AspS9I GGNCC 3 cut(s) 215, 327, 1026
AsuHPI GGTGA 3 cut(s) 23, 802, 1188
AvaII GGWCC 1 cut(s) 1026
BaeGI GKGCMC 2 cut(s) 352, 730
BamHI GGATCC 1 cut(s) 391
BanI GGYRCC 3 cut(s) 727, 825, 1178
BbsI GAAGAC 1 cut(s) 844
BbvCI CCTCAGC 1 cut(s) 252
BbvI GCAGC 7 cut(s) 121, 269, 349, 425, 973, 1111, 1176
BccI CCATC 7 cut(s) 178, 787, 816, 895, 898, 976, 1078
BceAI ACGGC 2 cut(s) 237, 1166
BciT130I CCWGG 2 cut(s) 325, 857
BcoDI GTCTC 1 cut(s) 1037
BcuI ACTAGT 1 cut(s) 377
BfaI CTAG 3 cut(s) 116, 297, 378
BfmI CTRYAG 3 cut(s) 438, 1125, 1162
BisI GCNGC 8 cut(s) 135, 258, 363, 414, 987, 1122, 1125, 1165
BlpI GCTNAGC 1 cut(s) 156
BlsI GCNGC 8 cut(s) 136, 259, 364, 415, 988, 1123, 1126, 1166
Bme1390I CCNGG 2 cut(s) 325, 857
Bme18I GGWCC 1 cut(s) 1026
BmgT120I GGNCC 3 cut(s) 215, 327, 1026
BmiI GGNNCC 7 cut(s) 216, 307, 393, 729, 827, 1028, 1180
BmrFI CCNGG 2 cut(s) 325, 857
BmsI GCATC 6 cut(s) 400, 409, 693, 884, 933, 1063
BpiI GAAGAC 1 cut(s) 844
Bpu10I CCTNAGC 1 cut(s) 252
Bpu1102I GCTNAGC 1 cut(s) 156
BpuEI CTTGAG 3 cut(s) 295, 1034, 1124
Bsa29I ATCGAT 1 cut(s) 634
BsaBI GATNNNNATC 1 cut(s) 492
BsaJI CCNNGG 4 cut(s) 139, 324, 659, 1182
BsaWI WCCGGW 1 cut(s) 190
BsaXI ACNNNNNCTCC 2 cut(s) 659, 689
Bsc4I CCNNNNNNNGG 6 cut(s) 197, 224, 1023, 1035, 1175, 1205
Bse118I RCCGGY 3 cut(s) 190, 1198, 1202
Bse1I ACTGG 3 cut(s) 466, 566, 1066
Bse8I GATNNNNATC 1 cut(s) 492
BseBI CCWGG 2 cut(s) 325, 857
BseCI ATCGAT 1 cut(s) 634
BseDI CCNNGG 4 cut(s) 139, 324, 659, 1182
BseGI GGATG 2 cut(s) 460, 827
BseJI GATNNNNATC 1 cut(s) 492
BseLI CCNNNNNNNGG 6 cut(s) 197, 224, 1023, 1035, 1175, 1205
BseMII CTCAG 4 cut(s) 243, 358, 926, 1032
BseNI ACTGG 3 cut(s) 466, 566, 1066
BseSI GKGCMC 2 cut(s) 352, 730
BseX3I CGGCCG 1 cut(s) 1200
BseXI GCAGC 7 cut(s) 121, 269, 349, 425, 973, 1111, 1176
BseYI CCCAGC 1 cut(s) 817
Bsh1236I CGCG 1 cut(s) 498
Bsh1285I CGRYCG 1 cut(s) 1203
BshFI GGCC 3 cut(s) 217, 329, 1202
BshNI GGYRCC 3 cut(s) 727, 825, 1178
BshTI ACCGGT 1 cut(s) 190
BshVI ATCGAT 1 cut(s) 634
BsiEI CGRYCG 1 cut(s) 1203
BsiSI CCGG 3 cut(s) 191, 1199, 1203
BslI CCNNNNNNNGG 6 cut(s) 197, 224, 1023, 1035, 1175, 1205
BsmAI GTCTC 1 cut(s) 1037
BsmI GAATGC 1 cut(s) 325
BsnI GGCC 3 cut(s) 217, 329, 1202
Bsp1286I GDGCHC 2 cut(s) 352, 730
Bsp143I GATC 4 cut(s) 147, 391, 545, 631
Bsp1720I GCTNAGC 1 cut(s) 156
BspACI CCGC 2 cut(s) 1121, 1218
BspANI GGCC 3 cut(s) 217, 329, 1202
BspCNI CTCAG 4 cut(s) 244, 357, 927, 1033
BspDI ATCGAT 1 cut(s) 634
BspFNI CGCG 1 cut(s) 498
BspLI GGNNCC 7 cut(s) 216, 307, 393, 729, 827, 1028, 1180
BspMAI CTGCAG 2 cut(s) 1129, 1166
BspPI GGATC 2 cut(s) 386, 399
BspQI GCTCTTC 1 cut(s) 1194
BspT107I GGYRCC 3 cut(s) 727, 825, 1178
BsrFI RCCGGY 3 cut(s) 190, 1198, 1202
BsrI ACTGG 3 cut(s) 466, 566, 1066
BssAI RCCGGY 3 cut(s) 190, 1198, 1202
BssECI CCNNGG 4 cut(s) 139, 324, 659, 1182
BssMI GATC 4 cut(s) 147, 391, 545, 631
BssT1I CCWWGG 2 cut(s) 139, 659
Bst2UI CCWGG 2 cut(s) 325, 857
Bst4CI ACNGT 1 cut(s) 835
Bst6I CTCTTC 2 cut(s) 266, 1194
BstAPI GCANNNNNTGC 2 cut(s) 419, 881
BstC8I GCNNGC 3 cut(s) 56, 500, 706
BstDEI CTNAG 5 cut(s) 156, 252, 344, 935, 1041
BstDSI CCRYGG 1 cut(s) 1182
BstEII GGTNACC 1 cut(s) 1208
BstF5I GGATG 2 cut(s) 460, 827
BstFNI CGCG 1 cut(s) 498
BstHHI GCGC 2 cut(s) 864, 1094
BstKTI GATC 4 cut(s) 150, 394, 548, 634
BstMAI GTCTC 1 cut(s) 1037
BstMBI GATC 4 cut(s) 147, 391, 545, 631
BstMCI CGRYCG 1 cut(s) 1203
BstMWI GCNNNNNNNGC 7 cut(s) 11, 134, 248, 257, 419, 881, 992
BstNI CCWGG 2 cut(s) 325, 857
BstPI GGTNACC 1 cut(s) 1208
BstSCI CCNGG 2 cut(s) 323, 855
BstSFI CTRYAG 3 cut(s) 438, 1125, 1162
BstSLI GKGCMC 2 cut(s) 352, 730
BstUI CGCG 1 cut(s) 498
BstV1I GCAGC 7 cut(s) 121, 269, 349, 425, 973, 1111, 1176
BstV2I GAAGAC 1 cut(s) 844
BstX2I RGATCY 1 cut(s) 391
BstYI RGATCY 1 cut(s) 391
BstZI CGGCCG 1 cut(s) 1200
Bsu15I ATCGAT 1 cut(s) 634
BsuRI GGCC 3 cut(s) 217, 329, 1202
BsuTUI ATCGAT 1 cut(s) 634
BtgI CCRYGG 1 cut(s) 1182
BtsCI GGATG 2 cut(s) 460, 827
BtsIMutI CAGTG 1 cut(s) 352
Cac8I GCNNGC 3 cut(s) 56, 500, 706
CfoI GCGC 2 cut(s) 864, 1094
Cfr10I RCCGGY 3 cut(s) 190, 1198, 1202
Cfr13I GGNCC 3 cut(s) 215, 327, 1026
ClaI ATCGAT 1 cut(s) 634
Csp6I GTAC 3 cut(s) 508, 656, 1014
CspAI ACCGGT 1 cut(s) 190
CviAII CATG 4 cut(s) 503, 511, 595, 1175
CviQI GTAC 3 cut(s) 508, 656, 1014
DdeI CTNAG 5 cut(s) 156, 252, 344, 935, 1041
DpnI GATC 4 cut(s) 149, 393, 547, 633
DpnII GATC 4 cut(s) 147, 391, 545, 631
EaeI YGGCCR 1 cut(s) 1200
EagI CGGCCG 1 cut(s) 1200
Eam1104I CTCTTC 2 cut(s) 266, 1194
EarI CTCTTC 2 cut(s) 266, 1194
EciI GGCGGA 1 cut(s) 1207
EclXI CGGCCG 1 cut(s) 1200
Eco130I CCWWGG 2 cut(s) 139, 659
Eco47I GGWCC 1 cut(s) 1026
Eco52I CGGCCG 1 cut(s) 1200
Eco57I CTGAAG 2 cut(s) 656, 1092
Eco91I GGTNACC 1 cut(s) 1208
EcoO109I RGGNCCY 2 cut(s) 327, 1026
EcoO65I GGTNACC 1 cut(s) 1208
EcoRII CCWGG 2 cut(s) 323, 855
EcoT14I CCWWGG 2 cut(s) 139, 659
ErhI CCWWGG 2 cut(s) 139, 659
FaeI CATG 4 cut(s) 506, 514, 598, 1178
FatI CATG 4 cut(s) 502, 510, 594, 1174
FblI GTMKAC 1 cut(s) 558
Fnu4HI GCNGC 8 cut(s) 135, 258, 363, 414, 987, 1122, 1125, 1165
FokI GGATG 2 cut(s) 467, 834
Fsp4HI GCNGC 8 cut(s) 135, 258, 363, 414, 987, 1122, 1125, 1165
FspBI CTAG 3 cut(s) 116, 297, 378
FspI TGCGCA 1 cut(s) 1093
GlaI GCGC 2 cut(s) 863, 1093
GluI GCNGC 8 cut(s) 135, 258, 363, 414, 987, 1122, 1125, 1165
GsaI CCCAGC 1 cut(s) 821
HaeIII GGCC 3 cut(s) 217, 329, 1202
HapII CCGG 3 cut(s) 191, 1199, 1203
HhaI GCGC 2 cut(s) 864, 1094
Hin1II CATG 4 cut(s) 506, 514, 598, 1178
Hin6I GCGC 2 cut(s) 862, 1092
HinP1I GCGC 2 cut(s) 862, 1092
HincII GTYRAC 1 cut(s) 739
HindII GTYRAC 1 cut(s) 739
HindIII AAGCTT 1 cut(s) 158
HinfI GANTC 6 cut(s) 372, 493, 636, 937, 961, 1045
HpaII CCGG 3 cut(s) 191, 1199, 1203
HphI GGTGA 3 cut(s) 23, 802, 1188
Hpy166II GTNNAC 4 cut(s) 371, 403, 559, 739
Hpy188I TCNGA 5 cut(s) 175, 760, 892, 942, 1072
Hpy188III TCNNGA 4 cut(s) 9, 101, 297, 1036
Hpy8I GTNNAC 4 cut(s) 371, 403, 559, 739
Hpy99I CGWCG 1 cut(s) 223
HpyAV CCTTC 6 cut(s) 44, 58, 241, 282, 296, 984
HpyCH4III ACNGT 1 cut(s) 835
HpyCH4V TGCA 7 cut(s) 413, 502, 704, 753, 946, 1127, 1164
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 134, 248, 257, 419, 881, 992
HpyF3I CTNAG 5 cut(s) 156, 252, 344, 935, 1041
Hsp92II CATG 4 cut(s) 506, 514, 598, 1178
HspAI GCGC 2 cut(s) 862, 1092
Kzo9I GATC 4 cut(s) 147, 391, 545, 631
LguI GCTCTTC 1 cut(s) 1194
LmnI GCTCC 4 cut(s) 133, 305, 667, 889
Lsp1109I GCAGC 7 cut(s) 121, 269, 349, 425, 973, 1111, 1176
LweI GCATC 6 cut(s) 400, 409, 693, 884, 933, 1063
MaeI CTAG 3 cut(s) 116, 297, 378
MaeIII GTNAC 3 cut(s) 110, 121, 1208
MalI GATC 4 cut(s) 149, 393, 547, 633
MboI GATC 4 cut(s) 147, 391, 545, 631
MflI RGATCY 1 cut(s) 391
MhlI GDGCHC 2 cut(s) 352, 730
MluCI AATT 4 cut(s) 204, 339, 584, 720
MlyI GAGTC 3 cut(s) 366, 946, 1039
MnlI CCTC 8 cut(s) 39, 40, 70, 247, 319, 617, 657, 727
MseI TTAA 2 cut(s) 207, 648
MspA1I CMGCKG 2 cut(s) 260, 416
MspI CCGG 3 cut(s) 191, 1199, 1203
MspR9I CCNGG 2 cut(s) 325, 857
Mva1269I GAATGC 1 cut(s) 325
MvaI CCWGG 2 cut(s) 325, 857
MvnI CGCG 1 cut(s) 498
MwoI GCNNNNNNNGC 7 cut(s) 11, 134, 248, 257, 419, 881, 992
NdeII GATC 4 cut(s) 147, 391, 545, 631
NlaIII CATG 4 cut(s) 506, 514, 598, 1178
NlaIV GGNNCC 7 cut(s) 216, 307, 393, 729, 827, 1028, 1180
NsbI TGCGCA 1 cut(s) 1093
PciSI GCTCTTC 1 cut(s) 1194
PctI GAATGC 1 cut(s) 325
PfeI GAWTC 3 cut(s) 493, 636, 961
PflFI GACNNNGTC 1 cut(s) 746
PflMI CCANNNNNTGG 1 cut(s) 1175
PinAI ACCGGT 1 cut(s) 190
PkrI GCNGC 8 cut(s) 136, 259, 364, 415, 988, 1123, 1126, 1166
PleI GAGTC 3 cut(s) 366, 945, 1039
PpsI GAGTC 3 cut(s) 366, 945, 1039
PpuMI RGGWCCY 1 cut(s) 1026
PshBI ATTAAT 1 cut(s) 207
Psp5II RGGWCCY 1 cut(s) 1026
Psp6I CCWGG 2 cut(s) 323, 855
PspEI GGTNACC 1 cut(s) 1208
PspFI CCCAGC 1 cut(s) 817
PspGI CCWGG 2 cut(s) 323, 855
PspN4I GGNNCC 7 cut(s) 216, 307, 393, 729, 827, 1028, 1180
PspPI GGNCC 3 cut(s) 215, 327, 1026
PspPPI RGGWCCY 1 cut(s) 1026
PstI CTGCAG 2 cut(s) 1129, 1166
PsuI RGATCY 1 cut(s) 391
PsyI GACNNNGTC 1 cut(s) 746
PvuII CAGCTG 2 cut(s) 260, 416
RsaI GTAC 3 cut(s) 509, 657, 1015
RsaNI GTAC 3 cut(s) 508, 656, 1014
SapI GCTCTTC 1 cut(s) 1194
SaqAI TTAA 2 cut(s) 207, 648
SatI GCNGC 8 cut(s) 135, 258, 363, 414, 987, 1122, 1125, 1165
Sau3AI GATC 4 cut(s) 147, 391, 545, 631
Sau96I GGNCC 3 cut(s) 215, 327, 1026
SchI GAGTC 3 cut(s) 366, 946, 1039
ScrFI CCNGG 2 cut(s) 325, 857
SduI GDGCHC 2 cut(s) 352, 730
SfaNI GCATC 6 cut(s) 400, 409, 693, 884, 933, 1063
SfcI CTRYAG 3 cut(s) 438, 1125, 1162
SinI GGWCC 1 cut(s) 1026
SmlI CTYRAG 3 cut(s) 310, 1049, 1139
SmoI CTYRAG 3 cut(s) 310, 1049, 1139
SpeI ACTAGT 1 cut(s) 377
Sse9I AATT 4 cut(s) 204, 339, 584, 720
SsiI CCGC 2 cut(s) 1121, 1218
SspI AATATT 1 cut(s) 449
SspMI CTAG 3 cut(s) 116, 297, 378
StyD4I CCNGG 2 cut(s) 323, 855
StyI CCWWGG 2 cut(s) 139, 659
TaaI ACNGT 1 cut(s) 835
TaqI TCGA 2 cut(s) 634, 1009
TasI AATT 4 cut(s) 204, 339, 584, 720
TatI WGTACW 1 cut(s) 507
TauI GCSGC 1 cut(s) 1124
TfiI GAWTC 3 cut(s) 493, 636, 961
Tru1I TTAA 2 cut(s) 207, 648
Tru9I TTAA 2 cut(s) 207, 648
TscAI CASTG 1 cut(s) 352
TseI GCWGC 7 cut(s) 134, 257, 362, 413, 986, 1124, 1164
TspDTI ATGAA 4 cut(s) 471, 566, 729, 1103
TspRI CASTG 1 cut(s) 352
Tth111I GACNNNGTC 1 cut(s) 746
Van91I CCANNNNNTGG 1 cut(s) 1175
VpaK11BI GGWCC 1 cut(s) 1026
VspI ATTAAT 1 cut(s) 207
XapI RAATTY 2 cut(s) 584, 720
XbaI TCTAGA 1 cut(s) 296
XmiI GTMKAC 1 cut(s) 558
XspI CTAG 3 cut(s) 116, 297, 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.