Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0026933

Physical Location & Seq

Genomic Coordinates Reverse (-)

11500721 .. 11502136

Gene Structure 1416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G26950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGATTCAGGATCAAGCGAATGATTTATTAGCAATGAAGAAAACTTTTACTAAGTCTAAATGGAAACCAGAGGAAGATAGAATTTTGAAAGATTATGTTATTCAATATGGTGATAGAACTTGGACTCATGTTCCAAAACGCACGGGCCTTCCTCATAATCCTGCAAGTTGTCGTTTTCGTTGGATGAATCATCTTAAGCCAAGCTTGAAAAAAGGGCCCTTTACCGATGAGGAAGAGAAGCGTGTTCTCCAACTTCATGCTGTTTTGGGGAACAAATGGTCACAAATGGCTAGAGAATTCCCTGGTCGAACAGATAACGAGATAAAGAATTTTTGGAACGCAAGACGTATGCGATTGAAAGGAAAGGGTTTACCAGTTTACCCTGATGAAGTTCGAGAGCAGGCGATACGTACAGCAGCACAATATGGTGTAAAAGTTGAATTATTGAATGCTCATTATAGTCAAGACTCATTGATGGCAGGCAATGTCGAGAAACCTCAAGAACTCAATAACTTGGCACTCAATCAATGTTCTCCGTATTACCAGTCAACGCTTGCCAATGTTCAGCCTAGCCGCAATCGCGTTATGGAACCAGAAACAACATTTCCTTTCACGGGTGGATCTGCCATGAACGAGCAAAACCCTACTCTCTTGTGTAATCCTTACGTGGAGAGCACTCAAGAACAGTTACCTGACAGCCATTTGTTTGGAAATGTTACATATTCTTCTCCTCCTATGCCTCTCATTCACGAGGTTGAGAACTTGGAGCTCCCTTCATTCCAAGGCTTTGATTTTCATGAAGAGCCTAGCAGTTTTGGAGCAGAACAATATAACCCAATGCTGAATCTTGAGCCACACAACACTTTGGTCCAGTCTCCTCTGATAGGCCAGACACCAACAGATTTCCCATCATCATTCTATGATGAATTGTTGGATGAATTGTTGGAATCAGTTGTTAACGGTTCATTAGGAGAAATACCGAAAACCGATACCAGTTCGGAGTCCCAACTGTTTCAGTCCTCTCTACGTAGCCATACCGATGCTACACCAGACATTGCAAACACAACTGGTTATGTTGGTTCAAATGAGAGAAACACAACAAATGATGACGATTGGATAAGACTACTTCTCGATGAGGGATTCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

382

Amino Acids

43.51

Weight (kDa)

5.11

Isoelectric Point (pI)

51.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	18 - 65	8e-10	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	21 - 81	1.1e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	71 - 113	1.5e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	74 - 114	8e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0026933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26950 AT2G26960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	582
AciI	CCGC	1 cut(s)	574
AclWI	GGATC	2 cut(s)	18, 628
AcsI	RAATTY	3 cut(s)	81, 296, 328
AfaI	GTAC	1 cut(s)	412
AfiI	CCNNNNNNNGG	2 cut(s)	614, 884
AflII	CTTAAG	1 cut(s)	194
AgsI	TTSAA	7 cut(s)	88, 104, 208, 358, 440, 448, 1083
AjnI	CCWGG	1 cut(s)	301
AluBI	AGCT	2 cut(s)	204, 769
AluI	AGCT	2 cut(s)	204, 769
Alw21I	GWGCWC	2 cut(s)	677, 771
Alw26I	GTCTC	1 cut(s)	879
AlwI	GGATC	2 cut(s)	18, 628
AoxI	GGCC	3 cut(s)	145, 215, 886
ApaI	GGGCCC	1 cut(s)	219
ApeKI	GCWGC	1 cut(s)	416
ApoI	RAATTY	3 cut(s)	81, 296, 328
AspS9I	GGNCC	4 cut(s)	145, 215, 216, 868
AsuHPI	GGTGA	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	868
BaeGI	GKGCMC	1 cut(s)	219
BanII	GRGCYC	2 cut(s)	219, 771
BauI	CACGAG	1 cut(s)	749
Bbv12I	GWGCWC	2 cut(s)	677, 771
BbvI	GCAGC	1 cut(s)	428
BccI	CCATC	2 cut(s)	469, 916
BciT130I	CCWGG	1 cut(s)	303
BcoDI	GTCTC	1 cut(s)	879
BfaI	CTAG	3 cut(s)	291, 570, 807
BfrI	CTTAAG	1 cut(s)	194
BisI	GCNGC	2 cut(s)	417, 574
BlsI	GCNGC	2 cut(s)	418, 575
Bme1390I	CCNGG	1 cut(s)	303
Bme18I	GGWCC	1 cut(s)	868
BmgT120I	GGNCC	4 cut(s)	145, 215, 216, 868
BmiI	GGNNCC	2 cut(s)	217, 591
BmrFI	CCNGG	1 cut(s)	303
BmsI	GCATC	1 cut(s)	1030
BpuEI	CTTGAG	3 cut(s)	483, 663, 869
BsaAI	YACGTR	3 cut(s)	410, 667, 1028
BsaJI	CCNNGG	2 cut(s)	301, 781
Bsc4I	CCNNNNNNNGG	2 cut(s)	614, 884
Bse1I	ACTGG	5 cut(s)	374, 544, 871, 993, 1072
Bse3DI	GCAATG	3 cut(s)	39, 490, 1053
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	2 cut(s)	301, 781
BseGI	GGATG	2 cut(s)	189, 940
BseLI	CCNNNNNNNGG	2 cut(s)	614, 884
BseMI	GCAATG	3 cut(s)	39, 490, 1053
BseNI	ACTGG	5 cut(s)	374, 544, 871, 993, 1072
BseRI	GAGGAG	2 cut(s)	720, 867
BseSI	GKGCMC	1 cut(s)	219
BseXI	GCAGC	1 cut(s)	428
Bsh1236I	CGCG	1 cut(s)	582
BshFI	GGCC	3 cut(s)	147, 217, 888
BsiHKAI	GWGCWC	2 cut(s)	677, 771
BslFI	GGGAC	1 cut(s)	988
BslI	CCNNNNNNNGG	2 cut(s)	614, 884
BsmAI	GTCTC	1 cut(s)	879
BsmFI	GGGAC	1 cut(s)	988
BsmI	GAATGC	1 cut(s)	454
BsnI	GGCC	3 cut(s)	147, 217, 888
Bsp120I	GGGCCC	1 cut(s)	215
Bsp1286I	GDGCHC	3 cut(s)	219, 677, 771
Bsp143I	GATC	2 cut(s)	10, 620
BspACI	CCGC	1 cut(s)	574
BspANI	GGCC	3 cut(s)	147, 217, 888
BspFNI	CGCG	1 cut(s)	582
BspHI	TCATGA	1 cut(s)	796
BspLI	GGNNCC	2 cut(s)	217, 591
BspPI	GGATC	2 cut(s)	18, 628
BspQI	GCTCTTC	1 cut(s)	795
BspTI	CTTAAG	1 cut(s)	194
BsrDI	GCAATG	3 cut(s)	39, 490, 1053
BsrI	ACTGG	5 cut(s)	374, 544, 871, 993, 1072
BssECI	CCNNGG	2 cut(s)	301, 781
BssMI	GATC	2 cut(s)	10, 620
BssSI	CACGAG	1 cut(s)	749
BssT1I	CCWWGG	1 cut(s)	781
Bst2BI	CACGAG	1 cut(s)	749
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	3 cut(s)	687, 962, 1011
Bst6I	CTCTTC	2 cut(s)	228, 795
BstAFI	CTTAAG	1 cut(s)	194
BstBAI	YACGTR	3 cut(s)	410, 667, 1028
BstC8I	GCNNGC	3 cut(s)	402, 481, 555
BstDEI	CTNAG	1 cut(s)	51
BstENI	CCTNNNNNAGG	1 cut(s)	882
BstF5I	GGATG	2 cut(s)	189, 940
BstFNI	CGCG	1 cut(s)	582
BstKTI	GATC	2 cut(s)	13, 623
BstMAI	GTCTC	1 cut(s)	879
BstMBI	GATC	2 cut(s)	10, 620
BstMWI	GCNNNNNNNGC	1 cut(s)	579
BstNI	CCWGG	1 cut(s)	303
BstSCI	CCNGG	1 cut(s)	301
BstSLI	GKGCMC	1 cut(s)	219
BstSNI	TACGTA	2 cut(s)	410, 1028
BstUI	CGCG	1 cut(s)	582
BstV1I	GCAGC	1 cut(s)	428
BstX2I	RGATCY	1 cut(s)	620
BstXI	CCANNNNNNTGG	1 cut(s)	707
BstYI	RGATCY	1 cut(s)	620
BsuRI	GGCC	3 cut(s)	147, 217, 888
BtsCI	GGATG	2 cut(s)	189, 940
Cac8I	GCNNGC	3 cut(s)	402, 481, 555
CciI	TCATGA	1 cut(s)	796
Cfr13I	GGNCC	4 cut(s)	145, 215, 216, 868
Csp6I	GTAC	1 cut(s)	411
CviAII	CATG	4 cut(s)	128, 257, 628, 797
CviQI	GTAC	1 cut(s)	411
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	2 cut(s)	12, 622
DpnII	GATC	2 cut(s)	10, 620
Eam1104I	CTCTTC	2 cut(s)	228, 795
EarI	CTCTTC	2 cut(s)	228, 795
Ecl136II	GAGCTC	1 cut(s)	769
Eco105I	TACGTA	2 cut(s)	410, 1028
Eco130I	CCWWGG	1 cut(s)	781
Eco24I	GRGCYC	2 cut(s)	219, 771
Eco47I	GGWCC	1 cut(s)	868
Eco53kI	GAGCTC	1 cut(s)	769
EcoICRI	GAGCTC	1 cut(s)	769
EcoNI	CCTNNNNNAGG	1 cut(s)	882
EcoO109I	RGGNCCY	2 cut(s)	215, 216
EcoRI	GAATTC	1 cut(s)	296
EcoRII	CCWGG	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	781
EcoT38I	GRGCYC	2 cut(s)	219, 771
ErhI	CCWWGG	1 cut(s)	781
FaeI	CATG	4 cut(s)	131, 260, 631, 800
FalI	AAGNNNNNCTT	2 cut(s)	188, 220
FaqI	GGGAC	1 cut(s)	988
FatI	CATG	4 cut(s)	127, 256, 627, 796
Fnu4HI	GCNGC	2 cut(s)	417, 574
FokI	GGATG	2 cut(s)	196, 947
FriOI	GRGCYC	2 cut(s)	219, 771
Fsp4HI	GCNGC	2 cut(s)	417, 574
FspBI	CTAG	3 cut(s)	291, 570, 807
GluI	GCNGC	2 cut(s)	417, 574
HaeIII	GGCC	3 cut(s)	147, 217, 888
Hin1II	CATG	4 cut(s)	131, 260, 631, 800
HincII	GTYRAC	2 cut(s)	549, 958
HindII	GTYRAC	2 cut(s)	549, 958
HindIII	AAGCTT	1 cut(s)	202
HinfI	GANTC	8 cut(s)	4, 124, 187, 467, 844, 947, 1001, 1140
HpaI	GTTAAC	1 cut(s)	958
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	4 cut(s)	371, 379, 549, 958
Hpy188I	TCNGA	2 cut(s)	882, 1000
Hpy8I	GTNNAC	4 cut(s)	371, 379, 549, 958
HpyAV	CCTTC	2 cut(s)	158, 783
HpyCH4III	ACNGT	3 cut(s)	687, 962, 1011
HpyCH4IV	ACGT	4 cut(s)	346, 409, 666, 1027
HpyCH4V	TGCA	2 cut(s)	164, 1058
HpyF10VI	GCNNNNNNNGC	1 cut(s)	579
HpyF3I	CTNAG	1 cut(s)	51
HpySE526I	ACGT	4 cut(s)	346, 409, 666, 1027
Hsp92II	CATG	4 cut(s)	131, 260, 631, 800
KspAI	GTTAAC	1 cut(s)	958
Kzo9I	GATC	2 cut(s)	10, 620
LguI	GCTCTTC	1 cut(s)	795
LmnI	GCTCC	3 cut(s)	766, 774, 818
Lsp1109I	GCAGC	1 cut(s)	428
LweI	GCATC	1 cut(s)	1030
MaeI	CTAG	3 cut(s)	291, 570, 807
MaeII	ACGT	4 cut(s)	346, 409, 666, 1027
MaeIII	GTNAC	3 cut(s)	279, 687, 715
MalI	GATC	2 cut(s)	12, 622
MboI	GATC	2 cut(s)	10, 620
MboII	GAAGA	5 cut(s)	49, 86, 245, 717, 812
MflI	RGATCY	1 cut(s)	620
MhlI	GDGCHC	3 cut(s)	219, 677, 771
MluCI	AATT	6 cut(s)	81, 296, 328, 440, 926, 938
MlyI	GAGTC	3 cut(s)	118, 461, 1010
MmeI	TCCRAC	4 cut(s)	161, 274, 912, 924
MseI	TTAA	2 cut(s)	195, 957
MslI	CAYNNNNRTG	1 cut(s)	1038
MspCI	CTTAAG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	303
Mva1269I	GAATGC	1 cut(s)	454
MvaI	CCWGG	1 cut(s)	303
MvnI	CGCG	1 cut(s)	582
MwoI	GCNNNNNNNGC	1 cut(s)	579
NdeII	GATC	2 cut(s)	10, 620
NlaIII	CATG	4 cut(s)	131, 260, 631, 800
NlaIV	GGNNCC	2 cut(s)	217, 591
NmuCI	GTSAC	1 cut(s)	279
PagI	TCATGA	1 cut(s)	796
PciSI	GCTCTTC	1 cut(s)	795
PctI	GAATGC	1 cut(s)	454
PfeI	GAWTC	5 cut(s)	4, 187, 844, 947, 1140
PkrI	GCNGC	2 cut(s)	418, 575
PleI	GAGTC	3 cut(s)	118, 461, 1009
PpsI	GAGTC	3 cut(s)	118, 461, 1009
Ppu21I	YACGTR	3 cut(s)	410, 667, 1028
Psp124BI	GAGCTC	1 cut(s)	771
Psp6I	CCWGG	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	2 cut(s)	217, 591
PspOMI	GGGCCC	1 cut(s)	215
PspPI	GGNCC	4 cut(s)	145, 215, 216, 868
PsuI	RGATCY	1 cut(s)	620
RsaI	GTAC	1 cut(s)	412
RsaNI	GTAC	1 cut(s)	411
RseI	CAYNNNNRTG	1 cut(s)	1038
SacI	GAGCTC	1 cut(s)	771
SapI	GCTCTTC	1 cut(s)	795
SaqAI	TTAA	2 cut(s)	195, 957
SatI	GCNGC	2 cut(s)	417, 574
Sau3AI	GATC	2 cut(s)	10, 620
Sau96I	GGNCC	4 cut(s)	145, 215, 216, 868
SchI	GAGTC	3 cut(s)	118, 461, 1010
ScrFI	CCNGG	1 cut(s)	303
SduI	GDGCHC	3 cut(s)	219, 677, 771
SetI	ASST	9 cut(s)	206, 349, 412, 499, 669, 694, 756, 771, 1030
SfaNI	GCATC	1 cut(s)	1030
SinI	GGWCC	1 cut(s)	868
SmiMI	CAYNNNNRTG	1 cut(s)	1038
SmlI	CTYRAG	4 cut(s)	194, 498, 678, 848
SmoI	CTYRAG	4 cut(s)	194, 498, 678, 848
SnaBI	TACGTA	2 cut(s)	410, 1028
Sse9I	AATT	6 cut(s)	81, 296, 328, 440, 926, 938
SsiI	CCGC	1 cut(s)	574
SspMI	CTAG	3 cut(s)	291, 570, 807
SstI	GAGCTC	1 cut(s)	771
StyD4I	CCNGG	1 cut(s)	301
StyI	CCWWGG	1 cut(s)	781
TaaI	ACNGT	3 cut(s)	687, 962, 1011
TaiI	ACGT	4 cut(s)	349, 412, 669, 1030
TaqI	TCGA	4 cut(s)	307, 394, 489, 1131
TasI	AATT	6 cut(s)	81, 296, 328, 440, 926, 938
TauI	GCSGC	1 cut(s)	576
TfiI	GAWTC	5 cut(s)	4, 187, 844, 947, 1140
Tru1I	TTAA	2 cut(s)	195, 957
Tru9I	TTAA	2 cut(s)	195, 957
TseFI	GTSAC	1 cut(s)	279
TseI	GCWGC	1 cut(s)	416
Tsp45I	GTSAC	1 cut(s)	279
TspGWI	ACGGA	1 cut(s)	525
Vha464I	CTTAAG	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	868
XagI	CCTNNNNNAGG	1 cut(s)	882
XapI	RAATTY	3 cut(s)	81, 296, 328
XspI	CTAG	3 cut(s)	291, 570, 807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.