Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0026933

Physical Location & Seq

Genomic Coordinates Reverse (-)

11506065 .. 11507426

Gene Structure 1362 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G26960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGGGAAAGTTCGTCAAGATTCAGGATCAGACGATGACAATTCAATAAAGAAATCTTTTACTAAAGGTCCTTGGACACAAGCAGAAGACAATCTTTTGATAGCTTACGTTGATAAACATGGTGATGGAAACTGGAACGCTGTTCAAAACAACTCGGGCCTTTCTCGTTGTGGTAAAAGTTGTCGCCTTCGTTGGGTAAATCATCTGAGACCAGATTTGAAAAAAGGCGCTTTTACAGAGAAAGAAGAGAAACGTGTCATCGAACTTCATGCTTTGTTAGGGAACAAATGGGCACGAATGGCTGAAGAACTACCGGGACGAACAGATAATGAGATCAAGAACTTCTGGAATACAAGACTTAAGAGACTGCAACGACTTGGTTTACCTGTTTACCCCGATGAAGTTCGAGAGCATGCGATGAATGCAGCGACACATTCCGGTCTAAACACTGATTCATTGGATGGTCATCATAGTCAAGAATATATGGAGGCAGATACTGTTGAGATTCCTGAAGTGGATTTCGAGCATTTACCACTCAATCGATCTTCTTCATACTACCAGTCAATGCTTCGACATGTTCCTCCCACTAACGTCTTTGTGAGACAAAAACCGTGTTTCTTTCAGCCGCCTAATGTGTATAACTTGATACCACCATCTCCTTACATGTCTACCGGAAAACGTCCTAGAGAACCAGAAACCGCGTTTCCTTGCCCGGGTGGATATACCATGAACGAGCAAAGCCCTCGGCTCTGGAACTATCCTTTTGTTGAGAACGTTTCAGAACAGTTACCGGATAGTCATTTGCTTGGTAATGCTGCTTATTCTTCTCCTCCTGGACCTCTTGTTCACGGGGTTGAGAATTTCGAGTTCCCTTCATTCCAATATCATGAAGAGCCTGGCGGTTGGGGAGCAGATCAACCTAACCCAATGCCGGAACATGAGTCAGATAACACTTTGGTTCAATCTCCTCTGACAGCTCAAACACCATCAGATTGTCCATCATCATCACTCTATGATGGACTGTTGGAATCAGTTGTCTATGGATCATCAGGGGAGAAACCGGCAACCGATACCGATTCAGAATCTTCACTGTTTCAGTCATTTACACCAGCCAATGAAAACATAACCGGTAAAACTTGTTTTCTTACTCTTTATGCATTACATGCACTTCATTGTTTGTGTAATCAATTCAAGAAGTCTCCTCTTCTCCATCTGCATGACAAACTTAATTGGTGTAACAAATTTAGGTTCAACTCCTTCAAATCAGGGACACACATCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

427

Amino Acids

48.22

Weight (kDa)

5.91

Isoelectric Point (pI)

54.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	22 - 69	4.2e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	25 - 85	5.6e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	75 - 119	1.4e-15	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0026933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26950 AT2G26960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	668
AccII	CGCG	1 cut(s)	701
AciI	CCGC	3 cut(s)	626, 699, 900
AclI	AACGTT	1 cut(s)	774
AclWI	GGATC	2 cut(s)	34, 1051
AcsI	RAATTY	2 cut(s)	859, 1241
AcuI	CTGAAG	2 cut(s)	324, 531
AfiI	CCNNNNNNNGG	3 cut(s)	193, 713, 931
AflII	CTTAAG	1 cut(s)	359
AflIII	ACRYGT	3 cut(s)	253, 574, 663
AgeI	ACCGGT	1 cut(s)	1127
AgsI	TTSAA	7 cut(s)	45, 146, 220, 962, 1192, 1252, 1261
AjnI	CCWGG	2 cut(s)	832, 895
AloI	GAACNNNNNNTCC	2 cut(s)	828, 860
AluBI	AGCT	2 cut(s)	104, 977
AluI	AGCT	2 cut(s)	104, 977
Alw26I	GTCTC	4 cut(s)	202, 358, 595, 1203
AlwI	GGATC	2 cut(s)	34, 1051
AlwNI	CAGNNNCTG	1 cut(s)	497
Ama87I	CYCGRG	2 cut(s)	154, 712
AoxI	GGCC	1 cut(s)	157
ApeKI	GCWGC	2 cut(s)	425, 815
ApoI	RAATTY	2 cut(s)	859, 1241
AsiGI	ACCGGT	1 cut(s)	1127
AspLEI	GCGC	1 cut(s)	230
AspS9I	GGNCC	3 cut(s)	68, 157, 836
AsuC2I	CCSGG	3 cut(s)	315, 713, 714
AsuHPI	GGTGA	1 cut(s)	134
AvaI	CYCGRG	2 cut(s)	154, 712
AvaII	GGWCC	2 cut(s)	68, 836
BaeGI	GKGCMC	1 cut(s)	295
BbsI	GAAGAC	1 cut(s)	93
BbvI	GCAGC	2 cut(s)	437, 802
BccI	CCATC	7 cut(s)	119, 455, 661, 994, 1006, 1010, 1218
BcgI	CGANNNNNNTGC	4 cut(s)	251, 285, 725, 759
BciT130I	CCWGG	2 cut(s)	834, 897
BcnI	CCSGG	3 cut(s)	315, 713, 714
BcoDI	GTCTC	4 cut(s)	202, 358, 595, 1203
BfaI	CTAG	1 cut(s)	684
BfoI	RGCGCY	1 cut(s)	231
BfrI	CTTAAG	1 cut(s)	359
BisI	GCNGC	3 cut(s)	426, 626, 816
BlsI	GCNGC	3 cut(s)	427, 627, 817
Bme1390I	CCNGG	5 cut(s)	315, 713, 714, 834, 897
Bme18I	GGWCC	2 cut(s)	68, 836
BmeT110I	CYCGRG	2 cut(s)	154, 712
BmgT120I	GGNCC	3 cut(s)	68, 157, 836
BmrFI	CCNGG	5 cut(s)	315, 713, 714, 834, 897
BpiI	GAAGAC	1 cut(s)	93
BpuMI	CCSGG	3 cut(s)	315, 713, 714
Bsa29I	ATCGAT	1 cut(s)	541
BsaBI	GATNNNNATC	1 cut(s)	465
BsaI	GGTCTC	1 cut(s)	202
BsaJI	CCNNGG	3 cut(s)	71, 712, 743
BsaWI	WCCGGW	4 cut(s)	437, 671, 790, 1127
Bsc4I	CCNNNNNNNGG	3 cut(s)	193, 713, 931
Bse118I	RCCGGY	2 cut(s)	1060, 1127
Bse1I	ACTGG	2 cut(s)	137, 559
Bse8I	GATNNNNATC	1 cut(s)	465
BseBI	CCWGG	2 cut(s)	834, 897
BseCI	ATCGAT	1 cut(s)	541
BseDI	CCNNGG	3 cut(s)	71, 712, 743
BseGI	GGATG	2 cut(s)	466, 1275
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	3 cut(s)	193, 713, 931
BseMII	CTCAG	1 cut(s)	197
BseNI	ACTGG	2 cut(s)	137, 559
BseRI	GAGGAG	3 cut(s)	819, 957, 1191
BseSI	GKGCMC	1 cut(s)	295
BseXI	GCAGC	2 cut(s)	437, 802
Bsh1236I	CGCG	1 cut(s)	701
BshFI	GGCC	1 cut(s)	159
BshTI	ACCGGT	1 cut(s)	1127
BshVI	ATCGAT	1 cut(s)	541
BsiHKCI	CYCGRG	2 cut(s)	154, 712
BsiSI	CCGG	8 cut(s)	314, 438, 672, 713, 791, 932, 1061, 1128
BslFI	GGGAC	1 cut(s)	330
BslI	CCNNNNNNNGG	3 cut(s)	193, 713, 931
BsmAI	GTCTC	4 cut(s)	202, 358, 595, 1203
BsmFI	GGGAC	1 cut(s)	330
BsmI	GAATGC	1 cut(s)	427
BsnI	GGCC	1 cut(s)	159
Bso31I	GGTCTC	1 cut(s)	202
BsoBI	CYCGRG	2 cut(s)	154, 712
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	5 cut(s)	26, 333, 542, 913, 1043
BspACI	CCGC	3 cut(s)	626, 699, 900
BspANI	GGCC	1 cut(s)	159
BspCNI	CTCAG	1 cut(s)	198
BspDI	ATCGAT	1 cut(s)	541
BspFNI	CGCG	1 cut(s)	701
BspHI	TCATGA	1 cut(s)	886
BspPI	GGATC	2 cut(s)	34, 1051
BspQI	GCTCTTC	1 cut(s)	885
BspTI	CTTAAG	1 cut(s)	359
BspTNI	GGTCTC	1 cut(s)	202
BsrFI	RCCGGY	2 cut(s)	1060, 1127
BsrI	ACTGG	2 cut(s)	137, 559
BssAI	RCCGGY	2 cut(s)	1060, 1127
BssECI	CCNNGG	3 cut(s)	71, 712, 743
BssMI	GATC	5 cut(s)	26, 333, 542, 913, 1043
BssT1I	CCWWGG	1 cut(s)	71
Bst2UI	CCWGG	2 cut(s)	834, 897
Bst4CI	ACNGT	5 cut(s)	499, 612, 786, 1023, 1092
Bst6I	CTCTTC	3 cut(s)	240, 885, 1209
BstAFI	CTTAAG	1 cut(s)	359
BstAPI	GCANNNNNTGC	1 cut(s)	1163
BstC8I	GCNNGC	1 cut(s)	414
BstDEI	CTNAG	1 cut(s)	206
BstF5I	GGATG	2 cut(s)	466, 1275
BstFNI	CGCG	1 cut(s)	701
BstH2I	RGCGCY	1 cut(s)	231
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	5 cut(s)	29, 336, 545, 916, 1046
BstMAI	GTCTC	4 cut(s)	202, 358, 595, 1203
BstMBI	GATC	5 cut(s)	26, 333, 542, 913, 1043
BstMWI	GCNNNNNNNGC	3 cut(s)	299, 422, 1163
BstNI	CCWGG	2 cut(s)	834, 897
BstNSI	RCATGY	4 cut(s)	416, 578, 667, 1166
BstSCI	CCNGG	5 cut(s)	313, 711, 712, 832, 895
BstSLI	GKGCMC	1 cut(s)	295
BstUI	CGCG	1 cut(s)	701
BstV1I	GCAGC	2 cut(s)	437, 802
BstV2I	GAAGAC	1 cut(s)	93
Bsu15I	ATCGAT	1 cut(s)	541
BsuRI	GGCC	1 cut(s)	159
BsuTUI	ATCGAT	1 cut(s)	541
BtgZI	GCGATG	1 cut(s)	431
BtsCI	GGATG	2 cut(s)	466, 1275
BtsIMutI	CAGTG	2 cut(s)	447, 1088
Cac8I	GCNNGC	1 cut(s)	414
CaiI	CAGNNNCTG	1 cut(s)	497
CciI	TCATGA	1 cut(s)	886
CfoI	GCGC	1 cut(s)	230
Cfr10I	RCCGGY	2 cut(s)	1060, 1127
Cfr13I	GGNCC	3 cut(s)	68, 157, 836
Cfr9I	CCCGGG	1 cut(s)	712
ClaI	ATCGAT	1 cut(s)	541
CspAI	ACCGGT	1 cut(s)	1127
CviJI	RGCY	9 cut(s)	104, 159, 302, 625, 741, 748, 895, 977, 1112
CviKI_1	RGCY	9 cut(s)	104, 159, 302, 625, 741, 748, 895, 977, 1112
DdeI	CTNAG	1 cut(s)	206
DpnI	GATC	5 cut(s)	28, 335, 544, 915, 1045
DpnII	GATC	5 cut(s)	26, 333, 542, 913, 1043
Eam1104I	CTCTTC	3 cut(s)	240, 885, 1209
EarI	CTCTTC	3 cut(s)	240, 885, 1209
Eco130I	CCWWGG	1 cut(s)	71
Eco31I	GGTCTC	1 cut(s)	202
Eco47I	GGWCC	2 cut(s)	68, 836
Eco57I	CTGAAG	2 cut(s)	324, 531
Eco88I	CYCGRG	2 cut(s)	154, 712
EcoO109I	RGGNCCY	1 cut(s)	68
EcoRII	CCWGG	2 cut(s)	832, 895
EcoT14I	CCWWGG	1 cut(s)	71
EcoT22I	ATGCAT	1 cut(s)	1159
ErhI	CCWWGG	1 cut(s)	71
FalI	AAGNNNNNCTT	2 cut(s)	78, 110
FaqI	GGGAC	1 cut(s)	330
FblI	GTMKAC	1 cut(s)	668
Fnu4HI	GCNGC	3 cut(s)	426, 626, 816
FokI	GGATG	2 cut(s)	473, 1262
Fsp4HI	GCNGC	3 cut(s)	426, 626, 816
FspBI	CTAG	1 cut(s)	684
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	3 cut(s)	426, 626, 816
HaeII	RGCGCY	1 cut(s)	231
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	8 cut(s)	314, 438, 672, 713, 791, 932, 1061, 1128
HhaI	GCGC	1 cut(s)	230
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HinfI	GANTC	7 cut(s)	20, 452, 505, 941, 1028, 1076, 1082
HpaII	CCGG	8 cut(s)	314, 438, 672, 713, 791, 932, 1061, 1128
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	4 cut(s)	383, 391, 669, 847
Hpy188I	TCNGA	7 cut(s)	31, 207, 781, 946, 972, 991, 1081
Hpy8I	GTNNAC	4 cut(s)	383, 391, 669, 847
HpyAV	CCTTC	3 cut(s)	197, 882, 1267
HpyCH4III	ACNGT	5 cut(s)	499, 612, 786, 1023, 1092
HpyCH4IV	ACGT	5 cut(s)	108, 253, 591, 679, 774
HpyCH4V	TGCA	5 cut(s)	370, 425, 1157, 1166, 1216
HpyF10VI	GCNNNNNNNGC	3 cut(s)	299, 422, 1163
HpyF3I	CTNAG	1 cut(s)	206
HpySE526I	ACGT	5 cut(s)	108, 253, 591, 679, 774
HspAI	GCGC	1 cut(s)	228
Kzo9I	GATC	5 cut(s)	26, 333, 542, 913, 1043
LguI	GCTCTTC	1 cut(s)	885
LmnI	GCTCC	1 cut(s)	908
Lsp1109I	GCAGC	2 cut(s)	437, 802
MaeI	CTAG	1 cut(s)	684
MaeII	ACGT	5 cut(s)	108, 253, 591, 679, 774
MaeIII	GTNAC	2 cut(s)	786, 1235
MalI	GATC	5 cut(s)	28, 335, 544, 915, 1045
MboI	GATC	5 cut(s)	26, 333, 542, 913, 1043
MboII	GAAGA	9 cut(s)	98, 257, 317, 537, 540, 816, 902, 1077, 1196
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	5 cut(s)	40, 859, 1187, 1228, 1241
MlyI	GAGTC	1 cut(s)	950
MmeI	TCCRAC	1 cut(s)	1005
MnlI	CCTC	7 cut(s)	481, 591, 753, 840, 849, 978, 1212
Mph1103I	ATGCAT	1 cut(s)	1159
MseI	TTAA	2 cut(s)	360, 1227
MslI	CAYNNNNRTG	2 cut(s)	123, 1215
MspCI	CTTAAG	1 cut(s)	359
MspI	CCGG	8 cut(s)	314, 438, 672, 713, 791, 932, 1061, 1128
MspR9I	CCNGG	5 cut(s)	315, 713, 714, 834, 897
Mva1269I	GAATGC	1 cut(s)	427
MvaI	CCWGG	2 cut(s)	834, 897
MvnI	CGCG	1 cut(s)	701
MwoI	GCNNNNNNNGC	3 cut(s)	299, 422, 1163
NciI	CCSGG	3 cut(s)	315, 713, 714
NdeII	GATC	5 cut(s)	26, 333, 542, 913, 1043
NmeAIII	GCCGAG	1 cut(s)	724
NsiI	ATGCAT	1 cut(s)	1159
NspI	RCATGY	4 cut(s)	416, 578, 667, 1166
PaeI	GCATGC	1 cut(s)	416
PagI	TCATGA	1 cut(s)	886
PciI	ACATGT	2 cut(s)	574, 663
PciSI	GCTCTTC	1 cut(s)	885
PctI	GAATGC	1 cut(s)	427
PfeI	GAWTC	6 cut(s)	20, 452, 505, 1028, 1076, 1082
PfoI	TCCNGGA	1 cut(s)	832
PinAI	ACCGGT	1 cut(s)	1127
PkrI	GCNGC	3 cut(s)	427, 627, 817
PleI	GAGTC	1 cut(s)	949
PpsI	GAGTC	1 cut(s)	949
PpuMI	RGGWCCY	1 cut(s)	68
PscI	ACATGT	2 cut(s)	574, 663
Psp1406I	AACGTT	1 cut(s)	774
Psp5II	RGGWCCY	1 cut(s)	68
Psp6I	CCWGG	2 cut(s)	832, 895
PspGI	CCWGG	2 cut(s)	832, 895
PspPI	GGNCC	3 cut(s)	68, 157, 836
PspPPI	RGGWCCY	1 cut(s)	68
PstNI	CAGNNNCTG	1 cut(s)	497
RseI	CAYNNNNRTG	2 cut(s)	123, 1215
SapI	GCTCTTC	1 cut(s)	885
SaqAI	TTAA	2 cut(s)	360, 1227
SatI	GCNGC	3 cut(s)	426, 626, 816
Sau3AI	GATC	5 cut(s)	26, 333, 542, 913, 1043
Sau96I	GGNCC	3 cut(s)	68, 157, 836
SchI	GAGTC	1 cut(s)	950
ScrFI	CCNGG	5 cut(s)	315, 713, 714, 834, 897
SduI	GDGCHC	1 cut(s)	295
SinI	GGWCC	2 cut(s)	68, 836
SmaI	CCCGGG	1 cut(s)	714
SmiMI	CAYNNNNRTG	2 cut(s)	123, 1215
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
SphI	GCATGC	1 cut(s)	416
Sse9I	AATT	5 cut(s)	40, 859, 1187, 1228, 1241
SsiI	CCGC	3 cut(s)	626, 699, 900
SspMI	CTAG	1 cut(s)	684
StyD4I	CCNGG	5 cut(s)	313, 711, 712, 832, 895
StyI	CCWWGG	1 cut(s)	71
TaaI	ACNGT	5 cut(s)	499, 612, 786, 1023, 1092
TaiI	ACGT	5 cut(s)	111, 256, 594, 682, 777
TaqI	TCGA	6 cut(s)	261, 406, 522, 541, 571, 864
TasI	AATT	5 cut(s)	40, 859, 1187, 1228, 1241
TauI	GCSGC	1 cut(s)	628
TfiI	GAWTC	6 cut(s)	20, 452, 505, 1028, 1076, 1082
Tru1I	TTAA	2 cut(s)	360, 1227
Tru9I	TTAA	2 cut(s)	360, 1227
TscAI	CASTG	2 cut(s)	454, 1095
TseI	GCWGC	2 cut(s)	425, 815
TspMI	CCCGGG	1 cut(s)	712
TspRI	CASTG	2 cut(s)	454, 1095
Vha464I	CTTAAG	1 cut(s)	359
VpaK11BI	GGWCC	2 cut(s)	68, 836
XapI	RAATTY	2 cut(s)	859, 1241
XceI	RCATGY	4 cut(s)	416, 578, 667, 1166
XmaI	CCCGGG	1 cut(s)	712
XmiI	GTMKAC	1 cut(s)	668
XspI	CTAG	1 cut(s)	684
Zsp2I	ATGCAT	1 cut(s)	1159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.