AT2G27330

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0020921
Physical Location & Seq
Reverse (-)
11695032 .. 11696799
1768 bp
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UTR
Exon/CDS
Intron
AT2G27330.1

Sequence Viewer

Length: 351 bp
ATGCTCACCCAGTTCCTTTATCGCTCCTTCACTCCTCTCCTCTTCTCCAGATCTTTCTCCTCTACGCTTTTCGTTAAAGGCATATCTTTCTCAAGCACTGAAGAAACATTAACCCAAGCATTTTCTCAATATGGTCAAGTTCTCAAAGTGGATGTTATAATGGACAAAATCAGATGCAGACCAAAAGGGTTTGCTTATGTCACATTCTCATCTAAAGAAGAAGCCGAGAAAGCTTTATTAGAACTCAACGCCCAGTTGGTTGACGGGCGGGTCGTGATCCTTGACACAACAAAAGCTGCAAAACACAATCCACCAGACACCAAGCCAAATCATGCAGGTGGTGATAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

116

Amino Acids

12.91

Weight (kDa)

8.76

Isoelectric Point (pI)

25.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 23 - 92 1.5e-18 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020921)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27330
malus_domestica MD03G1149700.v1.1
prunus_persica Prupe.6G135700_v2.0.a1 Prupe.6G135700_v2.0.a1 Prupe.6G135700_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 158
AarI CACCTGC 1 cut(s) 326
AasI GACNNNNNNGTC 1 cut(s) 269
Acc36I ACCTGC 1 cut(s) 326
AciI CCGC 1 cut(s) 268
AclWI GGATC 1 cut(s) 271
AcuI CTGAAG 1 cut(s) 120
AluBI AGCT 3 cut(s) 233, 296, 348
AluI AGCT 3 cut(s) 233, 296, 348
AlwI GGATC 1 cut(s) 271
ApeKI GCWGC 1 cut(s) 296
BbvI GCAGC 1 cut(s) 283
BfuAI ACCTGC 1 cut(s) 326
BglII AGATCT 1 cut(s) 50
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
BmrI ACTGGG 2 cut(s) 4, 247
BmsI GCATC 1 cut(s) 164
BmuI ACTGGG 2 cut(s) 4, 247
BpmI CTGGAG 1 cut(s) 31
BpuEI CTTGAG 1 cut(s) 76
Bse1I ACTGG 2 cut(s) 10, 253
BseGI GGATG 1 cut(s) 157
BseNI ACTGG 2 cut(s) 10, 253
BseRI GAGGAG 3 cut(s) 24, 29, 49
BseXI GCAGC 1 cut(s) 283
Bsp143I GATC 2 cut(s) 50, 276
BspACI CCGC 1 cut(s) 268
BspMI ACCTGC 1 cut(s) 326
BspPI GGATC 1 cut(s) 271
BsrI ACTGG 2 cut(s) 10, 253
BssMI GATC 2 cut(s) 50, 276
Bst6I CTCTTC 1 cut(s) 47
BstF5I GGATG 1 cut(s) 157
BstKTI GATC 2 cut(s) 53, 279
BstMBI GATC 2 cut(s) 50, 276
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstV1I GCAGC 1 cut(s) 283
BstX2I RGATCY 1 cut(s) 50
BstYI RGATCY 1 cut(s) 50
BtsCI GGATG 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 96
BveI ACCTGC 1 cut(s) 326
CviAII CATG 1 cut(s) 332
CviJI RGCY 5 cut(s) 224, 233, 296, 325, 348
CviKI_1 RGCY 5 cut(s) 224, 233, 296, 325, 348
DpnI GATC 2 cut(s) 52, 278
DpnII GATC 2 cut(s) 50, 276
DrdI GACNNNNNNGTC 1 cut(s) 269
DseDI GACNNNNNNGTC 1 cut(s) 269
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco57I CTGAAG 1 cut(s) 120
FaeI CATG 1 cut(s) 335
FaiI YATR 5 cut(s) 83, 132, 158, 198, 333
FatI CATG 1 cut(s) 331
FauI CCCGC 1 cut(s) 261
Fnu4HI GCNGC 1 cut(s) 297
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 1 cut(s) 297
GluI GCNGC 1 cut(s) 297
GsuI CTGGAG 1 cut(s) 31
Hin1II CATG 1 cut(s) 335
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HindIII AAGCTT 1 cut(s) 231
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 1 cut(s) 173
Hpy188III TCNNGA 2 cut(s) 48, 274
Hpy8I GTNNAC 1 cut(s) 262
HpyAV CCTTC 1 cut(s) 37
HpyCH4V TGCA 3 cut(s) 177, 299, 335
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
Hsp92II CATG 1 cut(s) 335
Kzo9I GATC 2 cut(s) 50, 276
LmnI GCTCC 1 cut(s) 29
LpnPI CCDG 5 cut(s) 23, 61, 266, 321, 327
Lsp1109I GCAGC 1 cut(s) 283
LweI GCATC 1 cut(s) 164
MaeIII GTNAC 1 cut(s) 199
MalI GATC 2 cut(s) 52, 278
MboI GATC 2 cut(s) 50, 276
MboII GAAGA 3 cut(s) 34, 113, 230
MflI RGATCY 1 cut(s) 50
MnlI CCTC 3 cut(s) 45, 50, 70
MseI TTAA 2 cut(s) 75, 110
MslI CAYNNNNRTG 1 cut(s) 336
MwoI GCNNNNNNNGC 1 cut(s) 230
NdeII GATC 2 cut(s) 50, 276
NlaIII CATG 1 cut(s) 335
NmeAIII GCCGAG 1 cut(s) 250
NmuCI GTSAC 1 cut(s) 199
PaqCI CACCTGC 1 cut(s) 326
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PkrI GCNGC 1 cut(s) 298
PsiI TTATAA 1 cut(s) 158
PsuI RGATCY 1 cut(s) 50
RseI CAYNNNNRTG 1 cut(s) 336
SaqAI TTAA 2 cut(s) 75, 110
SatI GCNGC 1 cut(s) 297
Sau3AI GATC 2 cut(s) 50, 276
SetI ASST 4 cut(s) 235, 298, 340, 350
SfaNI GCATC 1 cut(s) 164
SmiMI CAYNNNNRTG 1 cut(s) 336
SmlI CTYRAG 1 cut(s) 91
SmoI CTYRAG 1 cut(s) 91
SsiI CCGC 1 cut(s) 268
Tru1I TTAA 2 cut(s) 75, 110
Tru9I TTAA 2 cut(s) 75, 110
TscAI CASTG 1 cut(s) 103
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 1 cut(s) 296
Tsp45I GTSAC 1 cut(s) 199
TspRI CASTG 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.