AT2G34720

factor y, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0021901
Physical Location & Seq
Reverse (-)
14649706 .. 14651709
2004 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G34720.3

Sequence Viewer

Length: 597 bp
ATGACTTCTTCAGTACATGAGCTCTCTGATAACAATGAAAGTCATGCGAAGAAAGAACGTCCAGATTCCCAAACCCGACCACAGGTTCCTTCAGGACGAAGTTCGGAATCTATTGATACAAACTCTGTCTACTCAGAGCCCATGGCACATGGATTATACCCGTATCCAGATCCTTACTACAGAAGCGTCTTTGCACAGCAAGCGTATCTTCCACATCCCTATCCTGGGGTCCAATTGCAGTTAATGGGAATGCAGCAGCCAGGAGTTCCATTGCAATGTGATGCAGTCGAGGAACCTGTTTTTGTTAACGCAAAGCAATACCATGGTATACTCAGGCGCAGGCAATCCCGGGCAAAACTTGAGGCACGAAATAGAGCCATCAAAGCAAAAAAGCCATACATGCATGAATCTCGGCATTTACATGCGATAAGACGGCCAAGAGGATGTGGTGGCCGGTTTCTCAATGCCAAGAAGGAAAATGGAGACCACAAGGAGGAGGAGGAGGCAACCTCTGATGAGAACACTTCAGAAGCAAGTTCCAGCCTCAGGTCCGAGAAATTAGCTATGGCTACTTCTGGTCCTAATGGTAGATCTTGA

Protein Analysis

198

Amino Acids

22.26

Weight (kDa)

9.04

Isoelectric Point (pI)

74.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFB_NFYA PF02045 63 - 118 7e-27 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021901)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34720 AT2G34720 AT2G34720
rosa_chinensis RchiOBHm_Chr5g0015981

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 129, 328
AclWI GGATC 1 cut(s) 164
AcoI YGGCCR 2 cut(s) 434, 451
AcuI CTGAAG 2 cut(s) 75, 510
AfaI GTAC 1 cut(s) 15
AfiI CCNNNNNNNGG 5 cut(s) 82, 224, 225, 493, 546
AjnI CCWGG 2 cut(s) 223, 259
AluBI AGCT 2 cut(s) 22, 563
AluI AGCT 2 cut(s) 22, 563
Alw21I GWGCWC 1 cut(s) 24
Alw26I GTCTC 1 cut(s) 477
AlwI GGATC 1 cut(s) 164
Ama87I CYCGRG 1 cut(s) 348
AoxI GGCC 2 cut(s) 434, 451
ApeKI GCWGC 2 cut(s) 253, 256
AspLEI GCGC 1 cut(s) 339
AspS9I GGNCC 3 cut(s) 229, 549, 578
AsuC2I CCSGG 2 cut(s) 349, 350
AvaI CYCGRG 1 cut(s) 348
AvaII GGWCC 3 cut(s) 229, 549, 578
AxyI CCTNAGG 1 cut(s) 545
BanII GRGCYC 2 cut(s) 24, 141
Bbv12I GWGCWC 1 cut(s) 24
BbvI GCAGC 2 cut(s) 265, 268
BccI CCATC 1 cut(s) 386
BceAI ACGGC 1 cut(s) 449
BcgI CGANNNNNNTGC 2 cut(s) 392, 426
BciT130I CCWGG 2 cut(s) 225, 261
BciVI GTATCC 1 cut(s) 174
BcnI CCSGG 2 cut(s) 349, 350
BcoDI GTCTC 1 cut(s) 477
BfmI CTRYAG 1 cut(s) 178
BfuI GTATCC 1 cut(s) 174
BglII AGATCT 1 cut(s) 590
BisI GCNGC 2 cut(s) 254, 257
BlsI GCNGC 2 cut(s) 255, 258
Bme1390I CCNGG 4 cut(s) 225, 261, 349, 350
Bme18I GGWCC 3 cut(s) 229, 549, 578
BmeT110I CYCGRG 1 cut(s) 348
BmgT120I GGNCC 3 cut(s) 229, 549, 578
BmiI GGNNCC 3 cut(s) 87, 230, 294
BmrFI CCNGG 4 cut(s) 225, 261, 349, 350
BmsI GCATC 1 cut(s) 271
BplI GAGNNNNNCTC 2 cut(s) 494, 526
BpuEI CTTGAG 1 cut(s) 380
BpuMI CCSGG 2 cut(s) 349, 350
BsaI GGTCTC 1 cut(s) 477
BsaJI CCNNGG 4 cut(s) 141, 224, 322, 348
Bsc4I CCNNNNNNNGG 5 cut(s) 82, 224, 225, 493, 546
Bse118I RCCGGY 1 cut(s) 453
Bse21I CCTNAGG 1 cut(s) 545
Bse3DI GCAATG 2 cut(s) 269, 281
BseBI CCWGG 2 cut(s) 225, 261
BseDI CCNNGG 4 cut(s) 141, 224, 322, 348
BseGI GGATG 2 cut(s) 214, 449
BseLI CCNNNNNNNGG 5 cut(s) 82, 224, 225, 493, 546
BseMI GCAATG 2 cut(s) 269, 281
BseMII CTCAG 3 cut(s) 147, 346, 559
BseRI GAGGAG 3 cut(s) 509, 512, 515
BseXI GCAGC 2 cut(s) 265, 268
BshFI GGCC 2 cut(s) 436, 453
BsiHKAI GWGCWC 1 cut(s) 24
BsiHKCI CYCGRG 1 cut(s) 348
BsiSI CCGG 2 cut(s) 349, 454
BslI CCNNNNNNNGG 5 cut(s) 82, 224, 225, 493, 546
BsmAI GTCTC 1 cut(s) 477
BsmI GAATGC 1 cut(s) 255
BsnI GGCC 2 cut(s) 436, 453
Bso31I GGTCTC 1 cut(s) 477
BsoBI CYCGRG 1 cut(s) 348
Bsp1286I GDGCHC 2 cut(s) 24, 141
Bsp143I GATC 2 cut(s) 169, 590
Bsp19I CCATGG 2 cut(s) 141, 322
BspANI GGCC 2 cut(s) 436, 453
BspCNI CTCAG 3 cut(s) 146, 345, 558
BspLI GGNNCC 3 cut(s) 87, 230, 294
BspPI GGATC 1 cut(s) 164
BspTNI GGTCTC 1 cut(s) 477
BsrDI GCAATG 2 cut(s) 269, 281
BsrFI RCCGGY 1 cut(s) 453
BssAI RCCGGY 1 cut(s) 453
BssECI CCNNGG 4 cut(s) 141, 224, 322, 348
BssMI GATC 2 cut(s) 169, 590
BssNAI GTATAC 1 cut(s) 329
BssT1I CCWWGG 2 cut(s) 141, 322
Bst1107I GTATAC 1 cut(s) 329
Bst2UI CCWGG 2 cut(s) 225, 261
BstC8I GCNNGC 2 cut(s) 201, 341
BstDEI CTNAG 3 cut(s) 133, 332, 545
BstDSI CCRYGG 2 cut(s) 141, 322
BstF5I GGATG 2 cut(s) 214, 449
BstHHI GCGC 1 cut(s) 339
BstKTI GATC 2 cut(s) 172, 593
BstMAI GTCTC 1 cut(s) 477
BstMBI GATC 2 cut(s) 169, 590
BstMWI GCNNNNNNNGC 3 cut(s) 200, 383, 400
BstNI CCWGG 2 cut(s) 225, 261
BstNSI RCATGY 2 cut(s) 403, 425
BstSCI CCNGG 4 cut(s) 223, 259, 347, 348
BstSFI CTRYAG 1 cut(s) 178
BstV1I GCAGC 2 cut(s) 265, 268
BstX2I RGATCY 2 cut(s) 169, 590
BstYI RGATCY 2 cut(s) 169, 590
BstZ17I GTATAC 1 cut(s) 329
Bsu36I CCTNAGG 1 cut(s) 545
BsuI GTATCC 1 cut(s) 174
BsuRI GGCC 2 cut(s) 436, 453
BtgI CCRYGG 2 cut(s) 141, 322
BtsCI GGATG 2 cut(s) 214, 449
Cac8I GCNNGC 2 cut(s) 201, 341
CfoI GCGC 1 cut(s) 339
Cfr10I RCCGGY 1 cut(s) 453
Cfr13I GGNCC 3 cut(s) 229, 549, 578
Cfr9I CCCGGG 1 cut(s) 348
CseI GACGC 1 cut(s) 175
Csp6I GTAC 1 cut(s) 14
CviAII CATG 8 cut(s) 17, 44, 142, 149, 323, 400, 404, 422
CviQI GTAC 1 cut(s) 14
DdeI CTNAG 3 cut(s) 133, 332, 545
DpnI GATC 2 cut(s) 171, 592
DpnII GATC 2 cut(s) 169, 590
EaeI YGGCCR 2 cut(s) 434, 451
Ecl136II GAGCTC 1 cut(s) 22
Eco130I CCWWGG 2 cut(s) 141, 322
Eco24I GRGCYC 2 cut(s) 24, 141
Eco31I GGTCTC 1 cut(s) 477
Eco47I GGWCC 3 cut(s) 229, 549, 578
Eco53kI GAGCTC 1 cut(s) 22
Eco57I CTGAAG 2 cut(s) 75, 510
Eco81I CCTNAGG 1 cut(s) 545
Eco88I CYCGRG 1 cut(s) 348
EcoICRI GAGCTC 1 cut(s) 22
EcoRII CCWGG 2 cut(s) 223, 259
EcoT14I CCWWGG 2 cut(s) 141, 322
EcoT22I ATGCAT 1 cut(s) 405
EcoT38I GRGCYC 2 cut(s) 24, 141
ErhI CCWWGG 2 cut(s) 141, 322
FaeI CATG 8 cut(s) 20, 47, 145, 152, 326, 403, 407, 425
FalI AAGNNNNNCTT 2 cut(s) 192, 224
FatI CATG 8 cut(s) 16, 43, 141, 148, 322, 399, 403, 421
FblI GTMKAC 2 cut(s) 129, 328
Fnu4HI GCNGC 2 cut(s) 254, 257
FokI GGATG 2 cut(s) 201, 456
FriOI GRGCYC 2 cut(s) 24, 141
Fsp4HI GCNGC 2 cut(s) 254, 257
GlaI GCGC 1 cut(s) 338
GluI GCNGC 2 cut(s) 254, 257
HaeIII GGCC 2 cut(s) 436, 453
HapII CCGG 2 cut(s) 349, 454
HgaI GACGC 1 cut(s) 175
HhaI GCGC 1 cut(s) 339
Hin1II CATG 8 cut(s) 20, 47, 145, 152, 326, 403, 407, 425
Hin6I GCGC 1 cut(s) 337
HinP1I GCGC 1 cut(s) 337
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HinfI GANTC 3 cut(s) 65, 107, 407
HpaI GTTAAC 1 cut(s) 307
HpaII CCGG 2 cut(s) 349, 454
Hpy166II GTNNAC 3 cut(s) 130, 307, 329
Hpy188I TCNGA 6 cut(s) 28, 106, 136, 514, 529, 553
Hpy188III TCNNGA 4 cut(s) 62, 93, 167, 594
Hpy8I GTNNAC 3 cut(s) 130, 307, 329
HpyAV CCTTC 2 cut(s) 99, 466
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 6 cut(s) 194, 238, 253, 274, 284, 403
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 383, 400
HpyF3I CTNAG 3 cut(s) 133, 332, 545
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 8 cut(s) 20, 47, 145, 152, 326, 403, 407, 425
HspAI GCGC 1 cut(s) 337
KspAI GTTAAC 1 cut(s) 307
Kzo9I GATC 2 cut(s) 169, 590
Lsp1109I GCAGC 2 cut(s) 265, 268
LweI GCATC 1 cut(s) 271
MaeII ACGT 1 cut(s) 58
MalI GATC 2 cut(s) 171, 592
MboI GATC 2 cut(s) 169, 590
MboII GAAGA 2 cut(s) 61, 200
MfeI CAATTG 1 cut(s) 233
MflI RGATCY 2 cut(s) 169, 590
MhlI GDGCHC 2 cut(s) 24, 141
MluCI AATT 2 cut(s) 233, 557
MnlI CCTC 9 cut(s) 283, 355, 434, 487, 490, 493, 496, 520, 554
Mph1103I ATGCAT 1 cut(s) 405
MseI TTAA 2 cut(s) 242, 306
MslI CAYNNNNRTG 2 cut(s) 274, 420
MspI CCGG 2 cut(s) 349, 454
MspR9I CCNGG 4 cut(s) 225, 261, 349, 350
MunI CAATTG 1 cut(s) 233
Mva1269I GAATGC 1 cut(s) 255
MvaI CCWGG 2 cut(s) 225, 261
MwoI GCNNNNNNNGC 3 cut(s) 200, 383, 400
NciI CCSGG 2 cut(s) 349, 350
NcoI CCATGG 2 cut(s) 141, 322
NdeII GATC 2 cut(s) 169, 590
NlaIII CATG 8 cut(s) 20, 47, 145, 152, 326, 403, 407, 425
NlaIV GGNNCC 3 cut(s) 87, 230, 294
NmeAIII GCCGAG 1 cut(s) 391
NsiI ATGCAT 1 cut(s) 405
NspI RCATGY 2 cut(s) 403, 425
PctI GAATGC 1 cut(s) 255
PfeI GAWTC 3 cut(s) 65, 107, 407
PkrI GCNGC 2 cut(s) 255, 258
Psp124BI GAGCTC 1 cut(s) 24
Psp6I CCWGG 2 cut(s) 223, 259
PspGI CCWGG 2 cut(s) 223, 259
PspN4I GGNNCC 3 cut(s) 87, 230, 294
PspPI GGNCC 3 cut(s) 229, 549, 578
PsuI RGATCY 2 cut(s) 169, 590
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
RseI CAYNNNNRTG 2 cut(s) 274, 420
SacI GAGCTC 1 cut(s) 24
SaqAI TTAA 2 cut(s) 242, 306
SatI GCNGC 2 cut(s) 254, 257
Sau3AI GATC 2 cut(s) 169, 590
Sau96I GGNCC 3 cut(s) 229, 549, 578
ScrFI CCNGG 4 cut(s) 225, 261, 349, 350
SduI GDGCHC 2 cut(s) 24, 141
SetI ASST 7 cut(s) 24, 61, 87, 298, 512, 551, 565
SfaNI GCATC 1 cut(s) 271
SfcI CTRYAG 1 cut(s) 178
SinI GGWCC 3 cut(s) 229, 549, 578
SmaI CCCGGG 1 cut(s) 350
SmiMI CAYNNNNRTG 2 cut(s) 274, 420
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 2 cut(s) 233, 557
SstI GAGCTC 1 cut(s) 24
StyD4I CCNGG 4 cut(s) 223, 259, 347, 348
StyI CCWWGG 2 cut(s) 141, 322
TaiI ACGT 1 cut(s) 61
TaqI TCGA 1 cut(s) 288
TasI AATT 2 cut(s) 233, 557
TatI WGTACW 1 cut(s) 13
TfiI GAWTC 3 cut(s) 65, 107, 407
Tru1I TTAA 2 cut(s) 242, 306
Tru9I TTAA 2 cut(s) 242, 306
TseI GCWGC 2 cut(s) 253, 256
TspDTI ATGAA 2 cut(s) 51, 420
TspMI CCCGGG 1 cut(s) 348
VpaK11BI GGWCC 3 cut(s) 229, 549, 578
XceI RCATGY 2 cut(s) 403, 425
XmaI CCCGGG 1 cut(s) 348
XmiI GTMKAC 2 cut(s) 129, 328
Zsp2I ATGCAT 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.