RchiOBHm_Chr5g0015981

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0021901
Physical Location & Seq
Reverse (-)
11054795 .. 11055445
651 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29638

Sequence Viewer

Length: 651 bp
ATGCCTCTATGGCACACCATCGACACGGGTGTGGAGTTATCCGGCTACCACGAAGATTGGAAGGACGTGGAGAAGATGTGCCGCAACGCCATTGATCGCAGCTCTGGTCAATTGGTCGATATCTCGTGTGTATATGGCAGTAACGACCTCCTTAAGTACGTCGGTGACAGATGCAATGGTATCAGACGACTAACTTTGCATTGGTGCTCTGGAATAATAGATGGTGTTTTGAATGAAGTAGCTTATAAATTTCCACTATTGGAGGAGATTCACCTGTTCAAACTTGATAGATGCTCACTCTCGCCTAAAACTCTGGAGATGATTGGGCGATCATGCCCTATTTTGAAATCATTCAAATGGTACAAAATCATATGCAAGAGTACTGTTAGAGGTGGACAGGATGATGACTACGCAAAGGCTATAGCAGGAACCATGCGGGGTCTACAGCACCTCTCACTTTCTCGGTTAAATCTGACTAATAACGCTATGAAGGAAATTCTTGATTATTGTCCTTACCTCGAGTCACTTGATTTGGGCTATGTTTTTCGTGGAAGGTTTTGGATTCGTAAGAGGAGATTTAGAAACAAGAATGAAGGAAAAAAATCAAAATTTGTAGCTGCCTTATCCAGTGATGGCCTAGGTGTATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

216

Amino Acids

24.77

Weight (kDa)

9.05

Isoelectric Point (pI)

37.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021901)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34720 AT2G34720 AT2G34720
rosa_chinensis RchiOBHm_Chr5g0015981

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 246
AccI GTMKAC 1 cut(s) 442
AciI CCGC 2 cut(s) 82, 436
AcsI RAATTY 3 cut(s) 248, 495, 608
AfaI GTAC 3 cut(s) 158, 362, 382
AflII CTTAAG 1 cut(s) 152
AgsI TTSAA 4 cut(s) 232, 280, 346, 355
AjiI CACGTC 1 cut(s) 67
AleI CACNNNNGTG 1 cut(s) 29
AluBI AGCT 3 cut(s) 102, 242, 617
AluI AGCT 3 cut(s) 102, 242, 617
Alw21I GWGCWC 1 cut(s) 209
Ama87I CYCGRG 1 cut(s) 518
AoxI GGCC 1 cut(s) 634
ApeKI GCWGC 2 cut(s) 99, 617
ApoI RAATTY 3 cut(s) 248, 495, 608
Asp700I GAANNNNTTC 1 cut(s) 350
AspA2I CCTAGG 1 cut(s) 637
AsuHPI GGTGA 2 cut(s) 176, 263
AvaI CYCGRG 1 cut(s) 518
AvrII CCTAGG 1 cut(s) 637
BauI CACGAG 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 209
BbvI GCAGC 2 cut(s) 111, 604
BccI CCATC 3 cut(s) 26, 215, 626
BfaI CTAG 1 cut(s) 638
BfmI CTRYAG 2 cut(s) 420, 443
BfrI CTTAAG 1 cut(s) 152
BglI GCCNNNNNGGC 1 cut(s) 10
BisI GCNGC 3 cut(s) 82, 100, 618
BlnI CCTAGG 1 cut(s) 637
BlsI GCNGC 3 cut(s) 83, 101, 619
BmcAI AGTACT 1 cut(s) 382
BmeT110I CYCGRG 1 cut(s) 518
BmgBI CACGTC 1 cut(s) 67
BmiI GGNNCC 1 cut(s) 430
BmsI GCATC 2 cut(s) 161, 281
BpmI CTGGAG 1 cut(s) 335
BsaJI CCNNGG 1 cut(s) 637
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bse1I ACTGG 1 cut(s) 627
Bse3DI GCAATG 1 cut(s) 181
BseDI CCNNGG 1 cut(s) 637
BseGI GGATG 1 cut(s) 406
BseMI GCAATG 1 cut(s) 181
BseNI ACTGG 1 cut(s) 627
BseRI GAGGAG 2 cut(s) 278, 586
BseXI GCAGC 2 cut(s) 111, 604
BshFI GGCC 1 cut(s) 636
BsiHKAI GWGCWC 1 cut(s) 209
BsiHKCI CYCGRG 1 cut(s) 518
BsiSI CCGG 1 cut(s) 42
BsnI GGCC 1 cut(s) 636
BsoBI CYCGRG 1 cut(s) 518
Bsp1286I GDGCHC 1 cut(s) 209
Bsp143I GATC 2 cut(s) 94, 329
BspACI CCGC 2 cut(s) 82, 436
BspANI GGCC 1 cut(s) 636
BspLI GGNNCC 1 cut(s) 430
BspTI CTTAAG 1 cut(s) 152
BsrDI GCAATG 1 cut(s) 181
BsrI ACTGG 1 cut(s) 627
BssECI CCNNGG 1 cut(s) 637
BssMI GATC 2 cut(s) 94, 329
BssSI CACGAG 1 cut(s) 124
BssT1I CCWWGG 1 cut(s) 637
Bst2BI CACGAG 1 cut(s) 124
Bst4CI ACNGT 1 cut(s) 385
BstAFI CTTAAG 1 cut(s) 152
BstF5I GGATG 1 cut(s) 406
BstKTI GATC 2 cut(s) 97, 332
BstMBI GATC 2 cut(s) 94, 329
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstSFI CTRYAG 2 cut(s) 420, 443
BstV1I GCAGC 2 cut(s) 111, 604
BsuRI GGCC 1 cut(s) 636
BtrI CACGTC 1 cut(s) 67
BtsCI GGATG 1 cut(s) 406
BtsIMutI CAGTG 1 cut(s) 634
Csp6I GTAC 3 cut(s) 157, 361, 381
CspCI CAANNNNNGTGG 2 cut(s) 38, 73
CviAII CATG 2 cut(s) 333, 433
CviJI RGCY 7 cut(s) 45, 102, 242, 419, 537, 617, 636
CviKI_1 RGCY 7 cut(s) 45, 102, 242, 419, 537, 617, 636
CviQI GTAC 3 cut(s) 157, 361, 381
DpnI GATC 2 cut(s) 96, 331
DpnII GATC 2 cut(s) 94, 329
Eco130I CCWWGG 1 cut(s) 637
Eco32I GATATC 1 cut(s) 121
Eco88I CYCGRG 1 cut(s) 518
EcoRV GATATC 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 637
ErhI CCWWGG 1 cut(s) 637
FaeI CATG 2 cut(s) 336, 436
FatI CATG 2 cut(s) 332, 432
FauI CCCGC 1 cut(s) 429
FauNDI CATATG 1 cut(s) 371
FblI GTMKAC 1 cut(s) 442
Fnu4HI GCNGC 3 cut(s) 82, 100, 618
FokI GGATG 1 cut(s) 413
Fsp4HI GCNGC 3 cut(s) 82, 100, 618
FspBI CTAG 1 cut(s) 638
GluI GCNGC 3 cut(s) 82, 100, 618
GsuI CTGGAG 1 cut(s) 335
HaeIII GGCC 1 cut(s) 636
HapII CCGG 1 cut(s) 42
Hin1II CATG 2 cut(s) 336, 436
HinfI GANTC 3 cut(s) 268, 521, 562
HpaII CCGG 1 cut(s) 42
HphI GGTGA 2 cut(s) 176, 263
Hpy166II GTNNAC 2 cut(s) 395, 443
Hpy188I TCNGA 2 cut(s) 185, 474
Hpy188III TCNNGA 3 cut(s) 210, 314, 500
Hpy8I GTNNAC 2 cut(s) 395, 443
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 4 cut(s) 55, 484, 546, 587
HpyCH4III ACNGT 1 cut(s) 385
HpyCH4IV ACGT 2 cut(s) 66, 159
HpyCH4V TGCA 3 cut(s) 174, 199, 375
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpySE526I ACGT 2 cut(s) 66, 159
Hsp92II CATG 2 cut(s) 336, 436
Kzo9I GATC 2 cut(s) 94, 329
LpnPI CCDG 8 cut(s) 55, 90, 195, 287, 299, 383, 411, 640
Lsp1109I GCAGC 2 cut(s) 111, 604
LweI GCATC 2 cut(s) 161, 281
MaeI CTAG 1 cut(s) 638
MaeII ACGT 2 cut(s) 66, 159
MaeIII GTNAC 3 cut(s) 140, 164, 522
MalI GATC 2 cut(s) 96, 331
MboI GATC 2 cut(s) 94, 329
MboII GAAGA 2 cut(s) 65, 85
MfeI CAATTG 1 cut(s) 110
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 4 cut(s) 110, 248, 495, 608
MlyI GAGTC 1 cut(s) 530
MnlI CCTC 7 cut(s) 15, 158, 256, 383, 461, 527, 564
MroXI GAANNNNTTC 1 cut(s) 350
MseI TTAA 2 cut(s) 153, 467
MslI CAYNNNNRTG 2 cut(s) 29, 355
MspCI CTTAAG 1 cut(s) 152
MspI CCGG 1 cut(s) 42
MunI CAATTG 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeI CATATG 1 cut(s) 371
NdeII GATC 2 cut(s) 94, 329
NlaIII CATG 2 cut(s) 336, 436
NlaIV GGNNCC 1 cut(s) 430
NmuCI GTSAC 2 cut(s) 164, 522
OliI CACNNNNGTG 1 cut(s) 29
PaeR7I CTCGAG 1 cut(s) 518
PdmI GAANNNNTTC 1 cut(s) 350
PfeI GAWTC 2 cut(s) 268, 562
PkrI GCNGC 3 cut(s) 83, 101, 619
PleI GAGTC 1 cut(s) 529
PpsI GAGTC 1 cut(s) 529
PsiI TTATAA 1 cut(s) 246
PspN4I GGNNCC 1 cut(s) 430
PspXI VCTCGAGB 1 cut(s) 518
RsaI GTAC 3 cut(s) 158, 362, 382
RsaNI GTAC 3 cut(s) 157, 361, 381
RseI CAYNNNNRTG 2 cut(s) 29, 355
SaqAI TTAA 2 cut(s) 153, 467
SatI GCNGC 3 cut(s) 82, 100, 618
Sau3AI GATC 2 cut(s) 94, 329
ScaI AGTACT 1 cut(s) 382
SchI GAGTC 1 cut(s) 530
SduI GDGCHC 1 cut(s) 209
SfaNI GCATC 2 cut(s) 161, 281
SfcI CTRYAG 2 cut(s) 420, 443
Sfr274I CTCGAG 1 cut(s) 518
SlaI CTCGAG 1 cut(s) 518
SmiMI CAYNNNNRTG 2 cut(s) 29, 355
SmlI CTYRAG 2 cut(s) 152, 518
SmoI CTYRAG 2 cut(s) 152, 518
Sse9I AATT 4 cut(s) 110, 248, 495, 608
SsiI CCGC 2 cut(s) 82, 436
SspMI CTAG 1 cut(s) 638
StyI CCWWGG 1 cut(s) 637
TaaI ACNGT 1 cut(s) 385
TaiI ACGT 2 cut(s) 69, 162
TaqI TCGA 3 cut(s) 21, 117, 519
TasI AATT 4 cut(s) 110, 248, 495, 608
TatI WGTACW 1 cut(s) 380
TauI GCSGC 1 cut(s) 84
TfiI GAWTC 2 cut(s) 268, 562
Tru1I TTAA 2 cut(s) 153, 467
Tru9I TTAA 2 cut(s) 153, 467
TscAI CASTG 1 cut(s) 634
TseFI GTSAC 2 cut(s) 164, 522
TseI GCWGC 2 cut(s) 99, 617
Tsp45I GTSAC 2 cut(s) 164, 522
TspDTI ATGAA 3 cut(s) 249, 503, 606
TspRI CASTG 1 cut(s) 634
Vha464I CTTAAG 1 cut(s) 152
XapI RAATTY 3 cut(s) 248, 495, 608
XhoI CTCGAG 1 cut(s) 518
XmaJI CCTAGG 1 cut(s) 637
XmiI GTMKAC 1 cut(s) 442
XmnI GAANNNNTTC 1 cut(s) 350
XspI CTAG 1 cut(s) 638
ZrmI AGTACT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.