Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0021955

Physical Location & Seq

Genomic Coordinates Reverse (-)

16388691 .. 16391176

Gene Structure 2486 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G39250.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGTTGGACCTCAACCTCGGAATCTTGTCGACACACAACGAAGATGAAGATTGCAAAGTACCAACTTCCATCTTCATTCAAGAAGAAGATTCCATTAATCCCTCAAACGACAACTTGTCTTTGATTACATTTGGAATCCTTAAACGAAACGTCGAAATCCTTCCTCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTTCGGAAAATGAACTCTCCGGCCCCGGAAATGAGTGGTTGGATCTTTCGTCGATGCAAAGAAATAAACAAGAAACGTTGGTGATGAAGAAAAAAAGTCGACGTGGCCCAAGATCAAGAAGCTCTCATTATCGTGGCGTTACCTTTTACCGTCGAACCGGCCGTTGGGAATCTCATATTTGGGACTGTGGAAAACAAGTTTATTTGGGTGGTTTCGACACAGCCTACACAGCCGCAAGAGCGTACGACCGAGCTGCTATCAGATTCCGGGGACTCCAAGCAGATATCAACTTTATCGTGGATGATTACAAACAAGACATTGAAAAGATGAAGAATTTAAGCAAAGAAGAGTTTGTGCAATCTCTTAGACGAGCGAGTGCAAGCTTAGCAAGAGGAGGTTCTAAATACAAAAACACCCATATGAGAAATGATCACATCCATCTCTTCCAAAACAGGGGATTGAATGCAGCAGCAGCAAAATGCAATGAGATAAGAAAGATGGAAGGGGATATTAAGTTGGGTGCCCATAGTAAAGGAAATGAGCACAACGATCTCGAGCTAAGTCTTGGGATATCTTCATCGTCAAAAGTTAGAATTTTGGAACCAGCAGATTATTACATGGGTTTGAATCGATCGGTGACGAGTTTGCATGGGAAGCCGTTGCCGGGATATCTACCGATCACAGAAATTAAACCGTTAAAGACAGTTGTAGCATCATCAGGATTCCCTTTCATTACCATGATCAATCCTTCTTCTTTGTCCTTATCTTGTTTTGATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

325

Amino Acids

36.44

Weight (kDa)

9.02

Isoelectric Point (pI)

62.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	107 - 156	2.1e-10	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39250 AT2G39250 AT3G54990 AT3G54990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	716
AccI	GTMKAC	2 cut(s)	29, 295
AciI	CCGC	1 cut(s)	429
AclI	AACGTT	1 cut(s)	272
AclWI	GGATC	2 cut(s)	246, 965
AcoI	YGGCCR	1 cut(s)	355
AcsI	RAATTY	2 cut(s)	529, 789
AfaI	GTAC	2 cut(s)	60, 440
AfiI	CCNNNNNNNGG	3 cut(s)	360, 649, 860
AgsI	TTSAA	4 cut(s)	80, 518, 658, 823
AhdI	GACNNNNNGTC	1 cut(s)	115
AjiI	CACGTC	1 cut(s)	299
AjuI	GAANNNNNNNTTGG	2 cut(s)	343, 375
AluBI	AGCT	4 cut(s)	318, 449, 579, 754
AluI	AGCT	4 cut(s)	318, 449, 579, 754
Alw21I	GWGCWC	1 cut(s)	741
AlwI	GGATC	2 cut(s)	246, 965
Ama87I	CYCGRG	1 cut(s)	749
AoxI	GGCC	3 cut(s)	217, 301, 355
ApeKI	GCWGC	4 cut(s)	449, 662, 665, 668
ApoI	RAATTY	2 cut(s)	529, 789
AseI	ATTAAT	1 cut(s)	96
Asp700I	GAANNNNTTC	1 cut(s)	159
AspS9I	GGNCC	3 cut(s)	7, 218, 302
AsuC2I	CCSGG	3 cut(s)	222, 464, 861
AsuHPI	GGTGA	2 cut(s)	289, 844
AvaI	CYCGRG	1 cut(s)	749
AvaII	GGWCC	1 cut(s)	7
BaeGI	GKGCMC	1 cut(s)	721
BanI	GGYRCC	1 cut(s)	716
Bbv12I	GWGCWC	1 cut(s)	741
BbvI	GCAGC	4 cut(s)	436, 674, 677, 680
BccI	CCATC	3 cut(s)	77, 642, 688
BceAI	ACGGC	2 cut(s)	342, 838
BcgI	CGANNNNNNTGC	2 cut(s)	431, 465
BclI	TGATCA	2 cut(s)	625, 936
BcnI	CCSGG	3 cut(s)	222, 464, 861
BisI	GCNGC	5 cut(s)	429, 450, 663, 666, 669
BlpI	GCTNAGC	1 cut(s)	580
BlsI	GCNGC	5 cut(s)	430, 451, 664, 667, 670
Bme1390I	CCNGG	3 cut(s)	222, 464, 861
Bme18I	GGWCC	1 cut(s)	7
BmeRI	GACNNNNNGTC	1 cut(s)	115
BmeT110I	CYCGRG	1 cut(s)	749
BmgBI	CACGTC	1 cut(s)	299
BmgT120I	GGNCC	3 cut(s)	7, 218, 302
BmiI	GGNNCC	3 cut(s)	220, 718, 798
BmrFI	CCNGG	3 cut(s)	222, 464, 861
BmsI	GCATC	2 cut(s)	240, 917
Bpu1102I	GCTNAGC	1 cut(s)	580
BpuMI	CCSGG	3 cut(s)	222, 464, 861
Bsa29I	ATCGAT	1 cut(s)	826
BsaJI	CCNNGG	3 cut(s)	16, 220, 463
Bsc4I	CCNNNNNNNGG	3 cut(s)	360, 649, 860
Bse118I	RCCGGY	1 cut(s)	353
Bse3DI	GCAATG	1 cut(s)	685
BseCI	ATCGAT	1 cut(s)	826
BseDI	CCNNGG	3 cut(s)	16, 220, 463
BseGI	GGATG	2 cut(s)	502, 630
BseLI	CCNNNNNNNGG	3 cut(s)	360, 649, 860
BseMI	GCAATG	1 cut(s)	685
BseRI	GAGGAG	9 cut(s)	156, 165, 168, 171, 174, 177, 180, 183, 603
BseSI	GKGCMC	1 cut(s)	721
BseX3I	CGGCCG	1 cut(s)	355
BseXI	GCAGC	4 cut(s)	436, 674, 677, 680
Bsh1285I	CGRYCG	3 cut(s)	358, 445, 830
BshFI	GGCC	3 cut(s)	219, 303, 357
BshNI	GGYRCC	1 cut(s)	716
BshVI	ATCGAT	1 cut(s)	826
BsiEI	CGRYCG	3 cut(s)	358, 445, 830
BsiHKAI	GWGCWC	1 cut(s)	741
BsiHKCI	CYCGRG	1 cut(s)	749
BsiSI	CCGG	5 cut(s)	216, 222, 354, 463, 860
BsiWI	CGTACG	1 cut(s)	438
BslFI	GGGAC	2 cut(s)	392, 480
BslI	CCNNNNNNNGG	3 cut(s)	360, 649, 860
BsmFI	GGGAC	2 cut(s)	392, 480
BsmI	GAATGC	1 cut(s)	664
BsnI	GGCC	3 cut(s)	219, 303, 357
BsoBI	CYCGRG	1 cut(s)	749
Bsp1286I	GDGCHC	2 cut(s)	721, 741
Bsp143I	GATC	8 cut(s)	238, 308, 625, 745, 827, 873, 936, 970
Bsp1720I	GCTNAGC	1 cut(s)	580
BspACI	CCGC	1 cut(s)	429
BspANI	GGCC	3 cut(s)	219, 303, 357
BspDI	ATCGAT	1 cut(s)	826
BspLI	GGNNCC	3 cut(s)	220, 718, 798
BspPI	GGATC	2 cut(s)	246, 965
BspT107I	GGYRCC	1 cut(s)	716
BsrDI	GCAATG	1 cut(s)	685
BsrFI	RCCGGY	1 cut(s)	353
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	3 cut(s)	16, 220, 463
BssMI	GATC	8 cut(s)	238, 308, 625, 745, 827, 873, 936, 970
Bst4CI	ACNGT	4 cut(s)	347, 383, 891, 901
Bst6I	CTCTTC	2 cut(s)	537, 644
BstC8I	GCNNGC	1 cut(s)	577
BstDEI	CTNAG	3 cut(s)	560, 580, 755
BstF5I	GGATG	2 cut(s)	502, 630
BstKTI	GATC	8 cut(s)	241, 311, 628, 748, 830, 876, 939, 973
BstMBI	GATC	8 cut(s)	238, 308, 625, 745, 827, 873, 936, 970
BstMCI	CGRYCG	3 cut(s)	358, 445, 830
BstMWI	GCNNNNNNNGC	5 cut(s)	425, 434, 581, 668, 850
BstSCI	CCNGG	3 cut(s)	220, 462, 859
BstSLI	GKGCMC	1 cut(s)	721
BstV1I	GCAGC	4 cut(s)	436, 674, 677, 680
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BstZI	CGGCCG	1 cut(s)	355
Bsu15I	ATCGAT	1 cut(s)	826
BsuRI	GGCC	3 cut(s)	219, 303, 357
BsuTUI	ATCGAT	1 cut(s)	826
BtrI	CACGTC	1 cut(s)	299
BtsCI	GGATG	2 cut(s)	502, 630
Cac8I	GCNNGC	1 cut(s)	577
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	3 cut(s)	7, 218, 302
ClaI	ATCGAT	1 cut(s)	826
Csp6I	GTAC	2 cut(s)	59, 439
CviAII	CATG	4 cut(s)	814, 845, 934, 975
CviQI	GTAC	2 cut(s)	59, 439
DdeI	CTNAG	3 cut(s)	560, 580, 755
DpnI	GATC	8 cut(s)	240, 310, 627, 747, 829, 875, 938, 972
DpnII	GATC	8 cut(s)	238, 308, 625, 745, 827, 873, 936, 970
DriI	GACNNNNNGTC	1 cut(s)	115
EaeI	YGGCCR	1 cut(s)	355
EagI	CGGCCG	1 cut(s)	355
Eam1104I	CTCTTC	2 cut(s)	537, 644
Eam1105I	GACNNNNNGTC	1 cut(s)	115
EarI	CTCTTC	2 cut(s)	537, 644
EclXI	CGGCCG	1 cut(s)	355
Eco32I	GATATC	3 cut(s)	481, 768, 866
Eco47I	GGWCC	1 cut(s)	7
Eco52I	CGGCCG	1 cut(s)	355
Eco88I	CYCGRG	1 cut(s)	749
EcoRV	GATATC	3 cut(s)	481, 768, 866
FaeI	CATG	4 cut(s)	817, 848, 937, 978
FaiI	YATR	8 cut(s)	372, 615, 617, 723, 815, 846, 935, 976
FaqI	GGGAC	2 cut(s)	392, 480
FatI	CATG	4 cut(s)	813, 844, 933, 974
FauNDI	CATATG	1 cut(s)	615
FbaI	TGATCA	2 cut(s)	625, 936
FblI	GTMKAC	2 cut(s)	29, 295
Fnu4HI	GCNGC	5 cut(s)	429, 450, 663, 666, 669
FokI	GGATG	2 cut(s)	509, 617
Fsp4HI	GCNGC	5 cut(s)	429, 450, 663, 666, 669
GluI	GCNGC	5 cut(s)	429, 450, 663, 666, 669
HaeIII	GGCC	3 cut(s)	219, 303, 357
HapII	CCGG	5 cut(s)	216, 222, 354, 463, 860
Hin1II	CATG	4 cut(s)	817, 848, 937, 978
HincII	GTYRAC	2 cut(s)	30, 296
HindII	GTYRAC	2 cut(s)	30, 296
HindIII	AAGCTT	1 cut(s)	577
HinfI	GANTC	8 cut(s)	21, 89, 135, 365, 459, 468, 823, 918
HpaII	CCGG	5 cut(s)	216, 222, 354, 463, 860
HphI	GGTGA	2 cut(s)	289, 844
Hpy166II	GTNNAC	2 cut(s)	30, 296
Hpy188I	TCNGA	3 cut(s)	20, 202, 458
Hpy188III	TCNNGA	4 cut(s)	80, 312, 749, 915
Hpy8I	GTNNAC	2 cut(s)	30, 296
Hpy99I	CGWCG	4 cut(s)	155, 250, 300, 351
HpyAV	CCTTC	4 cut(s)	170, 207, 692, 954
HpyCH4III	ACNGT	4 cut(s)	347, 383, 891, 901
HpyCH4IV	ACGT	3 cut(s)	150, 272, 298
HpyCH4V	TGCA	7 cut(s)	54, 253, 553, 575, 662, 678, 844
HpyF10VI	GCNNNNNNNGC	5 cut(s)	425, 434, 581, 668, 850
HpyF3I	CTNAG	3 cut(s)	560, 580, 755
HpySE526I	ACGT	3 cut(s)	150, 272, 298
Hsp92II	CATG	4 cut(s)	817, 848, 937, 978
Ksp22I	TGATCA	2 cut(s)	625, 936
Kzo9I	GATC	8 cut(s)	238, 308, 625, 745, 827, 873, 936, 970
LpnPI	CCDG	8 cut(s)	229, 235, 367, 476, 634, 813, 873, 900
Lsp1109I	GCAGC	4 cut(s)	436, 674, 677, 680
LweI	GCATC	2 cut(s)	240, 917
MaeII	ACGT	3 cut(s)	150, 272, 298
MaeIII	GTNAC	2 cut(s)	334, 832
MalI	GATC	8 cut(s)	240, 310, 627, 747, 829, 875, 938, 972
MboI	GATC	8 cut(s)	238, 308, 625, 745, 827, 873, 936, 970
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	2 cut(s)	721, 741
MluCI	AATT	3 cut(s)	529, 789, 882
MlyI	GAGTC	1 cut(s)	462
MmeI	TCCRAC	1 cut(s)	216
MroXI	GAANNNNTTC	1 cut(s)	159
MseI	TTAA	6 cut(s)	96, 141, 533, 708, 885, 893
MslI	CAYNNNNRTG	3 cut(s)	327, 614, 932
MspI	CCGG	5 cut(s)	216, 222, 354, 463, 860
MspR9I	CCNGG	3 cut(s)	222, 464, 861
Mva1269I	GAATGC	1 cut(s)	664
MwoI	GCNNNNNNNGC	5 cut(s)	425, 434, 581, 668, 850
NciI	CCSGG	3 cut(s)	222, 464, 861
NdeI	CATATG	1 cut(s)	615
NdeII	GATC	8 cut(s)	238, 308, 625, 745, 827, 873, 936, 970
NlaIII	CATG	4 cut(s)	817, 848, 937, 978
NlaIV	GGNNCC	3 cut(s)	220, 718, 798
NmuCI	GTSAC	1 cut(s)	832
PaeR7I	CTCGAG	1 cut(s)	749
PcsI	WCGNNNNNNNCGW	1 cut(s)	355
PctI	GAATGC	1 cut(s)	664
PdmI	GAANNNNTTC	1 cut(s)	159
PfeI	GAWTC	7 cut(s)	21, 89, 135, 365, 459, 823, 918
Pfl23II	CGTACG	1 cut(s)	438
PkrI	GCNGC	5 cut(s)	430, 451, 664, 667, 670
Ple19I	CGATCG	1 cut(s)	830
PleI	GAGTC	1 cut(s)	462
PpsI	GAGTC	1 cut(s)	462
PshBI	ATTAAT	1 cut(s)	96
Psp1406I	AACGTT	1 cut(s)	272
PspLI	CGTACG	1 cut(s)	438
PspN4I	GGNNCC	3 cut(s)	220, 718, 798
PspPI	GGNCC	3 cut(s)	7, 218, 302
PsuI	RGATCY	1 cut(s)	238
PvuI	CGATCG	1 cut(s)	830
RsaI	GTAC	2 cut(s)	60, 440
RsaNI	GTAC	2 cut(s)	59, 439
RseI	CAYNNNNRTG	3 cut(s)	327, 614, 932
SalI	GTCGAC	2 cut(s)	28, 294
SaqAI	TTAA	6 cut(s)	96, 141, 533, 708, 885, 893
SatI	GCNGC	5 cut(s)	429, 450, 663, 666, 669
Sau3AI	GATC	8 cut(s)	238, 308, 625, 745, 827, 873, 936, 970
Sau96I	GGNCC	3 cut(s)	7, 218, 302
SchI	GAGTC	1 cut(s)	462
ScrFI	CCNGG	3 cut(s)	222, 464, 861
SduI	GDGCHC	2 cut(s)	721, 741
SfaNI	GCATC	2 cut(s)	240, 917
Sfr274I	CTCGAG	1 cut(s)	749
SinI	GGWCC	1 cut(s)	7
SlaI	CTCGAG	1 cut(s)	749
SmiMI	CAYNNNNRTG	3 cut(s)	327, 614, 932
SmlI	CTYRAG	1 cut(s)	749
SmoI	CTYRAG	1 cut(s)	749
Sse9I	AATT	3 cut(s)	529, 789, 882
SsiI	CCGC	1 cut(s)	429
StyD4I	CCNGG	3 cut(s)	220, 462, 859
TaaI	ACNGT	4 cut(s)	347, 383, 891, 901
TaiI	ACGT	3 cut(s)	153, 275, 301
TaqI	TCGA	8 cut(s)	29, 153, 248, 295, 349, 411, 750, 826
TaqII	GACCGA	1 cut(s)	459
TasI	AATT	3 cut(s)	529, 789, 882
TauI	GCSGC	1 cut(s)	431
TfiI	GAWTC	7 cut(s)	21, 89, 135, 365, 459, 823, 918
Tru1I	TTAA	6 cut(s)	96, 141, 533, 708, 885, 893
Tru9I	TTAA	6 cut(s)	96, 141, 533, 708, 885, 893
TseFI	GTSAC	1 cut(s)	832
TseI	GCWGC	4 cut(s)	449, 662, 665, 668
Tsp45I	GTSAC	1 cut(s)	832
TspDTI	ATGAA	7 cut(s)	60, 64, 222, 296, 539, 762, 916
VpaK11BI	GGWCC	1 cut(s)	7
VspI	ATTAAT	1 cut(s)	96
XapI	RAATTY	2 cut(s)	529, 789
XhoI	CTCGAG	1 cut(s)	749
XmiI	GTMKAC	2 cut(s)	29, 295
XmnI	GAANNNNTTC	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.