Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0021955

Physical Location & Seq

Genomic Coordinates Reverse (-)

20373718 .. 20376522

Gene Structure 2805 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G54990.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGTTGGATCTTAACCTAAAGATCTTTTCTTCTTATAACGAAGATCAAGATCGGAAAGTACCATTAATGATCTCAACCACCGGTGAAGAAGAATCTAACTCATCTTCCTCCTCCACAACAGACTCTGCAGCGAGAGATGCTTTCATCGCTTTTGGAATTCTCAAACGCGACGATGACCTTGTTCCTCCTCCTCCTCCTCCTCCTCATAAAGAAACAGGAGATCTCTTTCCGGTGGTGGCTGATGCTCGTCGGAATATAGAATTCTCCGTGGAAGACAGTCACTGGTTGAATCTTTCTTCTTTACAAAGAAATACACAGAAAATGGTGAAGAAGAGCAGAAGAGGACCAAGGTCTCGTAGCTCCCAATATCGTGGCGTCACTTTTTACCGTCGCACCGGTCGTTGGGAATCTCATATTTGGGATTGTGGAAAGCAAGTTTATTTGGGCGGGTTTGATACTGCTTACGCAGCAGCAAGGGCTTACGACCGAGCTGCTATCAAATTCCGTGGTCTCGATGCAGACATCAATTTCGTCGTGGATGATTATAGGCATGACATCGATAAGATGAAGAATTTAAATAAGGTGGAGTTCGTGCAAACACTTAGGCGAGAGAGTGCGAGTTTCGGAAGAGGAAGTTCCAAATACAAAGGCTTGGCTCTTCAAAAATGCACCCAATTCAAAACTCATGATCAGATTCATCTCTTCCAAAACAGGGGATGGGATGCAGCAGCAATAAAATACAATGAGTTGGGAAAGGGAGAAGGAGCCATGAAGTTTGGTGCCCATATCAAAGGAAATGGTCACAATGATCTTGAACTAAGTCTCGGAATTTCATCATCATCGGAAAGTATAAAGTTGACAACAGGCGATTACTATAAGGGTATCAATCGGTCCACGATGGGTTTATACGGTAAGCAATCATCGATATTTTTACCCATGGCAACCATGAAACCTCTGAAGACAGTTGCAGCATCATCAGGATTCCCTTTTATCAGCATGACAAGTTCCTCTTCCTCCATGTCCAATTGTTTTGATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

346

Amino Acids

38.67

Weight (kDa)

9.29

Isoelectric Point (pI)

55.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	122 - 170	2.1e-10	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39250 AT2G39250 AT3G54990 AT3G54990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	36
AccB1I	GGYRCC	1 cut(s)	779
AccII	CGCG	1 cut(s)	168
AciI	CCGC	1 cut(s)	447
AclWI	GGATC	2 cut(s)	15, 1028
AcsI	RAATTY	5 cut(s)	156, 260, 500, 571, 828
AcuI	CTGAAG	1 cut(s)	977
AcyI	GRCGYC	1 cut(s)	375
AfaI	GTAC	1 cut(s)	60
AfiI	CCNNNNNNNGG	2 cut(s)	402, 712
AgeI	ACCGGT	2 cut(s)	80, 395
AgsI	TTSAA	4 cut(s)	289, 662, 679, 815
AluBI	AGCT	2 cut(s)	360, 491
AluI	AGCT	2 cut(s)	360, 491
Alw26I	GTCTC	3 cut(s)	357, 515, 827
AlwI	GGATC	2 cut(s)	15, 1028
AlwNI	CAGNNNCTG	2 cut(s)	125, 282
ApeKI	GCWGC	7 cut(s)	128, 467, 470, 491, 725, 728, 968
ApoI	RAATTY	5 cut(s)	156, 260, 500, 571, 828
ArsI	GACNNNNNNTTYG	2 cut(s)	512, 544
AseI	ATTAAT	1 cut(s)	65
AsiGI	ACCGGT	2 cut(s)	80, 395
AspS9I	GGNCC	2 cut(s)	344, 891
AsuHPI	GGTGA	2 cut(s)	95, 337
AvaII	GGWCC	2 cut(s)	344, 891
BaeGI	GKGCMC	1 cut(s)	784
BanI	GGYRCC	1 cut(s)	779
BbsI	GAAGAC	2 cut(s)	279, 965
BbvI	GCAGC	7 cut(s)	140, 478, 479, 482, 737, 740, 980
BccI	CCATC	2 cut(s)	711, 892
BcgI	CGANNNNNNTGC	2 cut(s)	473, 507
BclI	TGATCA	1 cut(s)	688
BcoDI	GTCTC	3 cut(s)	357, 515, 827
BfmI	CTRYAG	1 cut(s)	126
BglII	AGATCT	2 cut(s)	21, 220
BisI	GCNGC	7 cut(s)	129, 468, 471, 492, 726, 729, 969
BlsI	GCNGC	7 cut(s)	130, 469, 472, 493, 727, 730, 970
Bme18I	GGWCC	2 cut(s)	344, 891
BmgT120I	GGNCC	2 cut(s)	344, 891
BmiI	GGNNCC	2 cut(s)	766, 781
BmsI	GCATC	5 cut(s)	127, 232, 505, 712, 980
BoxI	GACNNNNGTC	1 cut(s)	349
BpiI	GAAGAC	2 cut(s)	279, 965
Bsa29I	ATCGAT	2 cut(s)	558, 923
BsaBI	GATNNNNATC	1 cut(s)	48
BsaHI	GRCGYC	1 cut(s)	375
BsaI	GGTCTC	2 cut(s)	357, 515
BsaJI	CCNNGG	4 cut(s)	267, 347, 505, 936
BsaWI	WCCGGW	3 cut(s)	80, 229, 395
Bsc4I	CCNNNNNNNGG	2 cut(s)	402, 712
Bse118I	RCCGGY	2 cut(s)	80, 395
Bse1I	ACTGG	1 cut(s)	287
Bse8I	GATNNNNATC	1 cut(s)	48
BseCI	ATCGAT	2 cut(s)	558, 923
BseDI	CCNNGG	4 cut(s)	267, 347, 505, 936
BseGI	GGATG	3 cut(s)	544, 722, 727
BseJI	GATNNNNATC	1 cut(s)	48
BseLI	CCNNNNNNNGG	2 cut(s)	402, 712
BseNI	ACTGG	1 cut(s)	287
BseRI	GAGGAG	7 cut(s)	100, 177, 180, 183, 186, 189, 192
BseSI	GKGCMC	1 cut(s)	784
BseXI	GCAGC	7 cut(s)	140, 478, 479, 482, 737, 740, 980
Bsh1236I	CGCG	1 cut(s)	168
Bsh1285I	CGRYCG	2 cut(s)	400, 487
BshNI	GGYRCC	1 cut(s)	779
BshTI	ACCGGT	2 cut(s)	80, 395
BshVI	ATCGAT	2 cut(s)	558, 923
BsiEI	CGRYCG	2 cut(s)	400, 487
BsiSI	CCGG	3 cut(s)	81, 230, 396
BslI	CCNNNNNNNGG	2 cut(s)	402, 712
BsmAI	GTCTC	3 cut(s)	357, 515, 827
Bso31I	GGTCTC	2 cut(s)	357, 515
Bsp1286I	GDGCHC	1 cut(s)	784
Bsp143I	GATC	9 cut(s)	7, 21, 43, 49, 69, 220, 688, 808, 1033
Bsp19I	CCATGG	1 cut(s)	936
BspACI	CCGC	1 cut(s)	447
BspDI	ATCGAT	2 cut(s)	558, 923
BspFNI	CGCG	1 cut(s)	168
BspHI	TCATGA	1 cut(s)	685
BspLI	GGNNCC	2 cut(s)	766, 781
BspMAI	CTGCAG	1 cut(s)	130
BspPI	GGATC	2 cut(s)	15, 1028
BspQI	GCTCTTC	2 cut(s)	326, 663
BspT107I	GGYRCC	1 cut(s)	779
BspTNI	GGTCTC	2 cut(s)	357, 515
BsrFI	RCCGGY	2 cut(s)	80, 395
BsrI	ACTGG	1 cut(s)	287
BssAI	RCCGGY	2 cut(s)	80, 395
BssECI	CCNNGG	4 cut(s)	267, 347, 505, 936
BssMI	GATC	9 cut(s)	7, 21, 43, 49, 69, 220, 688, 808, 1033
BssNI	GRCGYC	1 cut(s)	375
BssT1I	CCWWGG	2 cut(s)	347, 936
Bst4CI	ACNGT	4 cut(s)	278, 389, 911, 964
Bst6I	CTCTTC	6 cut(s)	326, 334, 622, 663, 707, 1015
BstACI	GRCGYC	1 cut(s)	375
BstDEI	CTNAG	2 cut(s)	602, 818
BstDSI	CCRYGG	3 cut(s)	267, 505, 936
BstF5I	GGATG	3 cut(s)	544, 722, 727
BstFNI	CGCG	1 cut(s)	168
BstKTI	GATC	9 cut(s)	10, 24, 46, 52, 72, 223, 691, 811, 1036
BstMAI	GTCTC	3 cut(s)	357, 515, 827
BstMBI	GATC	9 cut(s)	7, 21, 43, 49, 69, 220, 688, 808, 1033
BstMCI	CGRYCG	2 cut(s)	400, 487
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 146, 467, 476
BstPAI	GACNNNNGTC	1 cut(s)	349
BstSFI	CTRYAG	1 cut(s)	126
BstSLI	GKGCMC	1 cut(s)	784
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	7 cut(s)	140, 478, 479, 482, 737, 740, 980
BstV2I	GAAGAC	2 cut(s)	279, 965
BstX2I	RGATCY	3 cut(s)	7, 21, 220
BstXI	CCANNNNNNTGG	1 cut(s)	371
BstYI	RGATCY	3 cut(s)	7, 21, 220
Bsu15I	ATCGAT	2 cut(s)	558, 923
BsuTUI	ATCGAT	2 cut(s)	558, 923
BtgI	CCRYGG	3 cut(s)	267, 505, 936
BtgZI	GCGATG	1 cut(s)	130
BtsCI	GGATG	3 cut(s)	544, 722, 727
BtsIMutI	CAGTG	1 cut(s)	280
CaiI	CAGNNNCTG	2 cut(s)	125, 282
CciI	TCATGA	1 cut(s)	685
Cfr10I	RCCGGY	2 cut(s)	80, 395
Cfr13I	GGNCC	2 cut(s)	344, 891
ClaI	ATCGAT	2 cut(s)	558, 923
CseI	GACGC	1 cut(s)	364
Csp6I	GTAC	1 cut(s)	59
CspAI	ACCGGT	2 cut(s)	80, 395
CspCI	CAANNNNNGTGG	2 cut(s)	487, 522
CviAII	CATG	7 cut(s)	551, 686, 769, 937, 946, 997, 1018
CviJI	RGCY	7 cut(s)	239, 360, 479, 491, 651, 656, 767
CviKI_1	RGCY	7 cut(s)	239, 360, 479, 491, 651, 656, 767
CviQI	GTAC	1 cut(s)	59
DdeI	CTNAG	2 cut(s)	602, 818
DpnI	GATC	9 cut(s)	9, 23, 45, 51, 71, 222, 690, 810, 1035
DpnII	GATC	9 cut(s)	7, 21, 43, 49, 69, 220, 688, 808, 1033
DraI	TTTAAA	1 cut(s)	576
Eam1104I	CTCTTC	6 cut(s)	326, 334, 622, 663, 707, 1015
EarI	CTCTTC	6 cut(s)	326, 334, 622, 663, 707, 1015
Eco130I	CCWWGG	2 cut(s)	347, 936
Eco31I	GGTCTC	2 cut(s)	357, 515
Eco47I	GGWCC	2 cut(s)	344, 891
Eco57I	CTGAAG	1 cut(s)	977
EcoRI	GAATTC	2 cut(s)	156, 260
EcoT14I	CCWWGG	2 cut(s)	347, 936
ErhI	CCWWGG	2 cut(s)	347, 936
FaeI	CATG	7 cut(s)	554, 689, 772, 940, 949, 1000, 1021
FalI	AAGNNNNNCTT	2 cut(s)	994, 1026
FatI	CATG	7 cut(s)	550, 685, 768, 936, 945, 996, 1017
FauI	CCCGC	1 cut(s)	440
FbaI	TGATCA	1 cut(s)	688
Fnu4HI	GCNGC	7 cut(s)	129, 468, 471, 492, 726, 729, 969
FokI	GGATG	3 cut(s)	551, 729, 734
Fsp4HI	GCNGC	7 cut(s)	129, 468, 471, 492, 726, 729, 969
GluI	GCNGC	7 cut(s)	129, 468, 471, 492, 726, 729, 969
HapII	CCGG	3 cut(s)	81, 230, 396
HgaI	GACGC	1 cut(s)	364
Hin1I	GRCGYC	1 cut(s)	375
Hin1II	CATG	7 cut(s)	554, 689, 772, 940, 949, 1000, 1021
HincII	GTYRAC	1 cut(s)	858
HindII	GTYRAC	1 cut(s)	858
HinfI	GANTC	6 cut(s)	92, 122, 289, 407, 694, 981
HpaII	CCGG	3 cut(s)	81, 230, 396
HphI	GGTGA	2 cut(s)	95, 337
Hpy166II	GTNNAC	2 cut(s)	858, 894
Hpy188I	TCNGA	7 cut(s)	54, 252, 626, 693, 827, 844, 957
Hpy188III	TCNNGA	5 cut(s)	47, 512, 686, 812, 978
Hpy8I	GTNNAC	2 cut(s)	858, 894
Hpy99I	CGWCG	4 cut(s)	173, 252, 393, 536
HpyAV	CCTTC	1 cut(s)	755
HpyCH4III	ACNGT	4 cut(s)	278, 389, 911, 964
HpyCH4V	TGCA	6 cut(s)	128, 518, 595, 669, 725, 968
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 146, 467, 476
HpyF3I	CTNAG	2 cut(s)	602, 818
Hsp92I	GRCGYC	1 cut(s)	375
Hsp92II	CATG	7 cut(s)	554, 689, 772, 940, 949, 1000, 1021
Ksp22I	TGATCA	1 cut(s)	688
Kzo9I	GATC	9 cut(s)	7, 21, 43, 49, 69, 220, 688, 808, 1033
LguI	GCTCTTC	2 cut(s)	326, 663
LmnI	GCTCC	2 cut(s)	365, 764
LpnPI	CCDG	8 cut(s)	94, 201, 243, 268, 409, 697, 849, 963
Lsp1109I	GCAGC	7 cut(s)	140, 478, 479, 482, 737, 740, 980
LweI	GCATC	5 cut(s)	127, 232, 505, 712, 980
MaeIII	GTNAC	3 cut(s)	278, 376, 800
MalI	GATC	9 cut(s)	9, 23, 45, 51, 71, 222, 690, 810, 1035
MboI	GATC	9 cut(s)	7, 21, 43, 49, 69, 220, 688, 808, 1033
MfeI	CAATTG	1 cut(s)	1024
MflI	RGATCY	3 cut(s)	7, 21, 220
MhlI	GDGCHC	1 cut(s)	784
MluCI	AATT	8 cut(s)	156, 260, 500, 526, 571, 674, 828, 1024
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	230
MseI	TTAA	3 cut(s)	12, 65, 575
MspI	CCGG	3 cut(s)	81, 230, 396
MunI	CAATTG	1 cut(s)	1024
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	4 cut(s)	137, 146, 467, 476
NcoI	CCATGG	1 cut(s)	936
NdeII	GATC	9 cut(s)	7, 21, 43, 49, 69, 220, 688, 808, 1033
NlaIII	CATG	7 cut(s)	554, 689, 772, 940, 949, 1000, 1021
NlaIV	GGNNCC	2 cut(s)	766, 781
NmuCI	GTSAC	3 cut(s)	278, 376, 800
PagI	TCATGA	1 cut(s)	685
PciSI	GCTCTTC	2 cut(s)	326, 663
PcsI	WCGNNNNNNNCGW	1 cut(s)	397
PfeI	GAWTC	5 cut(s)	92, 289, 407, 694, 981
PinAI	ACCGGT	2 cut(s)	80, 395
PkrI	GCNGC	7 cut(s)	130, 469, 472, 493, 727, 730, 970
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PshAI	GACNNNNGTC	1 cut(s)	349
PshBI	ATTAAT	1 cut(s)	65
PsiI	TTATAA	1 cut(s)	36
PspN4I	GGNNCC	2 cut(s)	766, 781
PspPI	GGNCC	2 cut(s)	344, 891
PstI	CTGCAG	1 cut(s)	130
PstNI	CAGNNNCTG	2 cut(s)	125, 282
PsuI	RGATCY	3 cut(s)	7, 21, 220
RsaI	GTAC	1 cut(s)	60
RsaNI	GTAC	1 cut(s)	59
SapI	GCTCTTC	2 cut(s)	326, 663
SaqAI	TTAA	3 cut(s)	12, 65, 575
SatI	GCNGC	7 cut(s)	129, 468, 471, 492, 726, 729, 969
Sau3AI	GATC	9 cut(s)	7, 21, 43, 49, 69, 220, 688, 808, 1033
Sau96I	GGNCC	2 cut(s)	344, 891
SchI	GAGTC	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	784
SetI	ASST	7 cut(s)	18, 180, 353, 362, 493, 585, 955
SfaNI	GCATC	5 cut(s)	127, 232, 505, 712, 980
SfcI	CTRYAG	1 cut(s)	126
SgrAI	CRCCGGYG	1 cut(s)	80
SinI	GGWCC	2 cut(s)	344, 891
SmiI	ATTTAAAT	1 cut(s)	576
Sse9I	AATT	8 cut(s)	156, 260, 500, 526, 571, 674, 828, 1024
SsiI	CCGC	1 cut(s)	447
StyI	CCWWGG	2 cut(s)	347, 936
SwaI	ATTTAAAT	1 cut(s)	576
TaaI	ACNGT	4 cut(s)	278, 389, 911, 964
TaqI	TCGA	3 cut(s)	513, 558, 923
TaqII	GACCGA	2 cut(s)	501, 879
TasI	AATT	8 cut(s)	156, 260, 500, 526, 571, 674, 828, 1024
TfiI	GAWTC	5 cut(s)	92, 289, 407, 694, 981
Tru1I	TTAA	3 cut(s)	12, 65, 575
Tru9I	TTAA	3 cut(s)	12, 65, 575
TscAI	CASTG	1 cut(s)	287
TseFI	GTSAC	3 cut(s)	278, 376, 800
TseI	GCWGC	7 cut(s)	128, 467, 470, 491, 725, 728, 968
Tsp45I	GTSAC	3 cut(s)	278, 376, 800
TspDTI	ATGAA	6 cut(s)	133, 581, 686, 785, 822, 962
TspGWI	ACGGA	2 cut(s)	256, 494
TspRI	CASTG	1 cut(s)	287
VpaK11BI	GGWCC	2 cut(s)	344, 891
VspI	ATTAAT	1 cut(s)	65
XapI	RAATTY	5 cut(s)	156, 260, 500, 571, 828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.