AT2G41290

Strictosidine synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0027599
Physical Location & Seq
Reverse (-)
17210428 .. 17213179
2752 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G41290.1

Sequence Viewer

Length: 1131 bp
ATGATGAAACTCCTCTTGGTGGTGGCAACTTCTGTTGCCCTTATCTTTAGCGTCACTGATTTATCCGGTGAGGGACCAAAACATGGAGGAGAATCCATGTTGACAGTCCAAATCCCTGATTTCCGTCTGATTCCTACCACCGGAGCTTTGGGACCGGAGAGTTTTGTCTTTGATTTTTTCGGCGATGGTCCTTACACCGGTTTATCTGACGGTCGAATTGTTAAGTGGCTAGCTAATGAGAGCCGTTGGATCGATTTCGCCGTCACCACCTCCGCAAGAGAAGGTTGTGAGGGCCCGCACGAGCACCAACGAACAGAACACGTGTGTGGACGACCATTGGGCCTTGCCTTTGACAAATCCACTGGTGACCTTTATATAGCCGATGCTTATATGGGCCTTCTTAAAGTTGGCCCAACAGGTGGTGTCGCCACTCAGGTGTTACCACGTGAGCTAAATGAGGCCCTTCGATTTACCAATTCTTTGGATATCAATCCACGGACCGGAGTTGTCTACTTTACCGACAGTAGTTCGGTTTATCAACGGAGGAACTATATAGGGGCGATGATGAGTGGGGACAAAACTGGTAGACTGATGAAGTACGACAACACGAAACAAGTGACCACTCTTCTAAGCAACTTAGCGTTTGTAAACGGTGTCGCTTTAAGCCAAAACGGTGATTACCTTCTCGTCGTCGAGACCGCCATGTGTCGTATCTTACGTTACTGGCTCAACGAAACGTCGGTAAAGTCTCAATCTCACGATAACTACGAGATTTTCGCGGAGGGGCTCCCTGGGTTTCCAGACAACATAAAGAGAAGTCCACGTGGCGGATTCTGGGTAGGCTTGAACACAAAACACTCAAAGCTGACAAAGTTCGCCATGTCGAACGCGTGGCTTGGACGTGCCGCTTTGGGCCTGCCGGTGGATTGGATGAAGGTCCATTCGGTTTGGGCCAGGTACAATGGGAACGGCATGGCCGTGAGGTTGAGCGAGGATAGTGGCGTTATATTAGAGGTATTCGAAGGTAAAAATGAAAATAAGTGGATATCTATAAGTGAGGTTGAAGAAAAAGATGGAACTCTTTGGGTTGGATCGGTGAATACTCCTTTCGCTGGCATGTATAAAATCTAA

Protein Analysis

376

Amino Acids

41.47

Weight (kDa)

6.2

Isoelectric Point (pI)

27.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Str_synth PF03088 159 - 245 7.2e-38 Strictosidine synthase
SGL PF08450 186 - 297 5.6e-07 SMP-30/Gluconolactonase/LRE-like region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0027599)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41290
prunus_persica Prupe.7G041300_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 83, 419
AccI GTMKAC 2 cut(s) 510, 586
AccII CGCG 2 cut(s) 779, 890
AciI CCGC 6 cut(s) 273, 296, 699, 779, 828, 906
AclWI GGATC 2 cut(s) 257, 1099
AcoI YGGCCR 1 cut(s) 975
AcvI CACGTG 3 cut(s) 322, 446, 824
AfaI GTAC 2 cut(s) 599, 959
AfiI CCNNNNNNNGG 9 cut(s) 19, 83, 140, 197, 419, 500, 827, 922, 1112
AflIII ACRYGT 3 cut(s) 319, 321, 888
AgeI ACCGGT 1 cut(s) 197
AgsI TTSAA 2 cut(s) 847, 1064
AjiI CACGTC 1 cut(s) 902
AjnI CCWGG 2 cut(s) 790, 953
AjuI GAANNNNNNNTTGG 1 cut(s) 31
AleI CACNNNNGTG 2 cut(s) 324, 434
AluBI AGCT 4 cut(s) 146, 233, 451, 865
AluI AGCT 4 cut(s) 146, 233, 451, 865
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 2 cut(s) 689, 753
AlwI GGATC 2 cut(s) 257, 1099
AoxI GGCC 8 cut(s) 292, 340, 394, 409, 459, 913, 951, 975
ApaI GGGCCC 1 cut(s) 296
AsiGI ACCGGT 1 cut(s) 197
AsuHPI GGTGA 5 cut(s) 80, 256, 377, 686, 1108
AsuII TTCGAA 1 cut(s) 1020
AsuNHI GCTAGC 1 cut(s) 229
AvaII GGWCC 5 cut(s) 74, 152, 188, 498, 937
BaeGI GKGCMC 1 cut(s) 296
BanII GRGCYC 2 cut(s) 296, 789
BauI CACGAG 1 cut(s) 299
BbrPI CACGTG 3 cut(s) 322, 446, 824
Bbv12I GWGCWC 1 cut(s) 306
BccI CCATC 2 cut(s) 179, 1067
BceAI ACGGC 4 cut(s) 228, 245, 962, 985
BciT130I CCWGG 2 cut(s) 792, 955
BcoDI GTCTC 2 cut(s) 689, 753
BfaI CTAG 1 cut(s) 230
BisI GCNGC 1 cut(s) 906
BlsI GCNGC 1 cut(s) 907
Bme1390I CCNGG 2 cut(s) 792, 955
Bme18I GGWCC 5 cut(s) 74, 152, 188, 498, 937
BmgBI CACGTC 1 cut(s) 902
BmiI GGNNCC 4 cut(s) 75, 153, 294, 788
BmrFI CCNGG 2 cut(s) 792, 955
BmsI GCATC 1 cut(s) 373
BmtI GCTAGC 1 cut(s) 233
Bpu14I TTCGAA 1 cut(s) 1020
Bsa29I ATCGAT 1 cut(s) 252
BsaAI YACGTR 3 cut(s) 322, 446, 824
BsaBI GATNNNNATC 1 cut(s) 489
BsaI GGTCTC 1 cut(s) 689
BsaJI CCNNGG 3 cut(s) 494, 790, 791
BsaWI WCCGGW 5 cut(s) 65, 140, 154, 197, 500
Bsc4I CCNNNNNNNGG 9 cut(s) 19, 83, 140, 197, 419, 500, 827, 922, 1112
Bse118I RCCGGY 2 cut(s) 197, 919
Bse1I ACTGG 3 cut(s) 367, 586, 728
Bse8I GATNNNNATC 1 cut(s) 489
BseBI CCWGG 2 cut(s) 792, 955
BseCI ATCGAT 1 cut(s) 252
BseDI CCNNGG 3 cut(s) 494, 790, 791
BseGI GGATG 1 cut(s) 936
BseJI GATNNNNATC 1 cut(s) 489
BseLI CCNNNNNNNGG 9 cut(s) 19, 83, 140, 197, 419, 500, 827, 922, 1112
BseMII CTCAG 1 cut(s) 446
BseNI ACTGG 3 cut(s) 367, 586, 728
BseRI GAGGAG 1 cut(s) 102
BseSI GKGCMC 1 cut(s) 296
Bsh1236I CGCG 2 cut(s) 779, 890
Bsh1285I CGRYCG 1 cut(s) 214
BshFI GGCC 8 cut(s) 294, 342, 396, 411, 461, 915, 953, 977
BshTI ACCGGT 1 cut(s) 197
BshVI ATCGAT 1 cut(s) 252
BsiEI CGRYCG 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 306
BsiSI CCGG 6 cut(s) 66, 141, 155, 198, 501, 920
BslFI GGGAC 3 cut(s) 87, 165, 587
BslI CCNNNNNNNGG 9 cut(s) 19, 83, 140, 197, 419, 500, 827, 922, 1112
BsmAI GTCTC 2 cut(s) 689, 753
BsmFI GGGAC 3 cut(s) 87, 165, 587
BsnI GGCC 8 cut(s) 294, 342, 396, 411, 461, 915, 953, 977
Bso31I GGTCTC 1 cut(s) 689
Bsp119I TTCGAA 1 cut(s) 1020
Bsp120I GGGCCC 1 cut(s) 292
Bsp1286I GDGCHC 3 cut(s) 296, 306, 789
Bsp143I GATC 2 cut(s) 249, 1091
BspACI CCGC 6 cut(s) 273, 296, 699, 779, 828, 906
BspANI GGCC 8 cut(s) 294, 342, 396, 411, 461, 915, 953, 977
BspCNI CTCAG 1 cut(s) 445
BspDI ATCGAT 1 cut(s) 252
BspFNI CGCG 2 cut(s) 779, 890
BspLI GGNNCC 4 cut(s) 75, 153, 294, 788
BspOI GCTAGC 1 cut(s) 233
BspPI GGATC 2 cut(s) 257, 1099
BspT104I TTCGAA 1 cut(s) 1020
BspTNI GGTCTC 1 cut(s) 689
BsrFI RCCGGY 2 cut(s) 197, 919
BsrI ACTGG 3 cut(s) 367, 586, 728
BssAI RCCGGY 2 cut(s) 197, 919
BssECI CCNNGG 3 cut(s) 494, 790, 791
BssMI GATC 2 cut(s) 249, 1091
BssSI CACGAG 1 cut(s) 299
Bst2BI CACGAG 1 cut(s) 299
Bst2UI CCWGG 2 cut(s) 792, 955
Bst4CI ACNGT 5 cut(s) 106, 212, 524, 653, 674
Bst6I CTCTTC 1 cut(s) 630
BstBAI YACGTR 3 cut(s) 322, 446, 824
BstBI TTCGAA 1 cut(s) 1020
BstC8I GCNNGC 4 cut(s) 231, 296, 917, 1114
BstDEI CTNAG 3 cut(s) 432, 629, 637
BstDSI CCRYGG 1 cut(s) 494
BstEII GGTNACC 1 cut(s) 365
BstF5I GGATG 1 cut(s) 936
BstFNI CGCG 2 cut(s) 779, 890
BstKTI GATC 2 cut(s) 252, 1094
BstMAI GTCTC 2 cut(s) 689, 753
BstMBI GATC 2 cut(s) 249, 1091
BstMCI CGRYCG 1 cut(s) 214
BstNI CCWGG 2 cut(s) 792, 955
BstNSI RCATGY 1 cut(s) 1120
BstPI GGTNACC 1 cut(s) 365
BstSCI CCNGG 2 cut(s) 790, 953
BstSLI GKGCMC 1 cut(s) 296
BstUI CGCG 2 cut(s) 779, 890
BstXI CCANNNNNNTGG 1 cut(s) 481
Bsu15I ATCGAT 1 cut(s) 252
BsuRI GGCC 8 cut(s) 294, 342, 396, 411, 461, 915, 953, 977
BsuTUI ATCGAT 1 cut(s) 252
BtgI CCRYGG 1 cut(s) 494
BtgZI GCGATG 2 cut(s) 198, 575
BtrI CACGTC 1 cut(s) 902
BtsCI GGATG 1 cut(s) 936
BtsIMutI CAGTG 2 cut(s) 54, 360
Cac8I GCNNGC 4 cut(s) 231, 296, 917, 1114
Cfr10I RCCGGY 2 cut(s) 197, 919
ClaI ATCGAT 1 cut(s) 252
CpoI CGGWCCG 1 cut(s) 498
CseI GACGC 1 cut(s) 40
Csp6I GTAC 2 cut(s) 598, 958
CspAI ACCGGT 1 cut(s) 197
CspI CGGWCCG 1 cut(s) 498
CviAII CATG 6 cut(s) 83, 97, 703, 880, 973, 1117
CviQI GTAC 2 cut(s) 598, 958
DdeI CTNAG 3 cut(s) 432, 629, 637
DpnI GATC 2 cut(s) 251, 1093
DpnII GATC 2 cut(s) 249, 1091
EaeI YGGCCR 1 cut(s) 975
Eam1104I CTCTTC 1 cut(s) 630
EarI CTCTTC 1 cut(s) 630
EciI GGCGGA 1 cut(s) 843
Eco24I GRGCYC 2 cut(s) 296, 789
Eco31I GGTCTC 1 cut(s) 689
Eco32I GATATC 2 cut(s) 487, 1047
Eco47I GGWCC 5 cut(s) 74, 152, 188, 498, 937
Eco72I CACGTG 3 cut(s) 322, 446, 824
Eco91I GGTNACC 1 cut(s) 365
EcoO109I RGGNCCY 2 cut(s) 292, 460
EcoO65I GGTNACC 1 cut(s) 365
EcoRII CCWGG 2 cut(s) 790, 953
EcoRV GATATC 2 cut(s) 487, 1047
EcoT38I GRGCYC 2 cut(s) 296, 789
FaeI CATG 6 cut(s) 86, 100, 706, 883, 976, 1120
FaqI GGGAC 3 cut(s) 87, 165, 587
FatI CATG 6 cut(s) 82, 96, 702, 879, 972, 1116
FauI CCCGC 1 cut(s) 303
FblI GTMKAC 2 cut(s) 510, 586
Fnu4HI GCNGC 1 cut(s) 906
FokI GGATG 1 cut(s) 943
FriOI GRGCYC 2 cut(s) 296, 789
Fsp4HI GCNGC 1 cut(s) 906
FspBI CTAG 1 cut(s) 230
GluI GCNGC 1 cut(s) 906
HaeIII GGCC 8 cut(s) 294, 342, 396, 411, 461, 915, 953, 977
HapII CCGG 6 cut(s) 66, 141, 155, 198, 501, 920
HgaI GACGC 1 cut(s) 40
Hin1II CATG 6 cut(s) 86, 100, 706, 883, 976, 1120
HincII GTYRAC 1 cut(s) 102
HindII GTYRAC 1 cut(s) 102
HinfI GANTC 3 cut(s) 92, 130, 831
HpaII CCGG 6 cut(s) 66, 141, 155, 198, 501, 920
HphI GGTGA 5 cut(s) 80, 256, 377, 686, 1108
Hpy166II GTNNAC 6 cut(s) 102, 329, 511, 587, 649, 821
Hpy188I TCNGA 2 cut(s) 129, 208
Hpy188III TCNNGA 3 cut(s) 694, 758, 800
Hpy8I GTNNAC 6 cut(s) 102, 329, 511, 587, 649, 821
Hpy99I CGWCG 3 cut(s) 692, 695, 742
HpyAV CCTTC 6 cut(s) 275, 407, 473, 692, 928, 1016
HpyCH4III ACNGT 5 cut(s) 106, 212, 524, 653, 674
HpyCH4IV ACGT 6 cut(s) 321, 445, 718, 737, 823, 901
HpyF3I CTNAG 3 cut(s) 432, 629, 637
HpySE526I ACGT 6 cut(s) 321, 445, 718, 737, 823, 901
Hsp92II CATG 6 cut(s) 86, 100, 706, 883, 976, 1120
Kzo9I GATC 2 cut(s) 249, 1091
LmnI GCTCC 2 cut(s) 143, 792
LweI GCATC 1 cut(s) 373
MaeI CTAG 1 cut(s) 230
MaeII ACGT 6 cut(s) 321, 445, 718, 737, 823, 901
MaeIII GTNAC 6 cut(s) 52, 262, 365, 438, 616, 719
MalI GATC 2 cut(s) 251, 1093
MboI GATC 2 cut(s) 249, 1091
MboII GAAGA 2 cut(s) 617, 1076
MhlI GDGCHC 3 cut(s) 296, 306, 789
MluCI AATT 2 cut(s) 216, 475
MluI ACGCGT 1 cut(s) 888
MmeI TCCRAC 2 cut(s) 227, 1069
MseI TTAA 3 cut(s) 222, 402, 662
MslI CAYNNNNRTG 3 cut(s) 324, 434, 977
MspI CCGG 6 cut(s) 66, 141, 155, 198, 501, 920
MspR9I CCNGG 2 cut(s) 792, 955
MvaI CCWGG 2 cut(s) 792, 955
MvnI CGCG 2 cut(s) 779, 890
NdeII GATC 2 cut(s) 249, 1091
NheI GCTAGC 1 cut(s) 229
NlaIII CATG 6 cut(s) 86, 100, 706, 883, 976, 1120
NlaIV GGNNCC 4 cut(s) 75, 153, 294, 788
NmuCI GTSAC 4 cut(s) 52, 262, 365, 616
NspI RCATGY 1 cut(s) 1120
NspV TTCGAA 1 cut(s) 1020
OliI CACNNNNGTG 2 cut(s) 324, 434
PasI CCCWGGG 1 cut(s) 791
PcsI WCGNNNNNNNCGW 4 cut(s) 258, 715, 765, 975
PfeI GAWTC 3 cut(s) 92, 130, 831
PflMI CCANNNNNTGG 2 cut(s) 83, 419
PinAI ACCGGT 1 cut(s) 197
PkrI GCNGC 1 cut(s) 907
PmaCI CACGTG 3 cut(s) 322, 446, 824
PmlI CACGTG 3 cut(s) 322, 446, 824
Ppu21I YACGTR 3 cut(s) 322, 446, 824
Psp6I CCWGG 2 cut(s) 790, 953
PspCI CACGTG 3 cut(s) 322, 446, 824
PspEI GGTNACC 1 cut(s) 365
PspGI CCWGG 2 cut(s) 790, 953
PspN4I GGNNCC 4 cut(s) 75, 153, 294, 788
PspOMI GGGCCC 1 cut(s) 292
RsaI GTAC 2 cut(s) 599, 959
RsaNI GTAC 2 cut(s) 598, 958
RseI CAYNNNNRTG 3 cut(s) 324, 434, 977
Rsr2I CGGWCCG 1 cut(s) 498
RsrII CGGWCCG 1 cut(s) 498
SaqAI TTAA 3 cut(s) 222, 402, 662
SatI GCNGC 1 cut(s) 906
Sau3AI GATC 2 cut(s) 249, 1091
ScrFI CCNGG 2 cut(s) 792, 955
SduI GDGCHC 3 cut(s) 296, 306, 789
SfaNI GCATC 1 cut(s) 373
SfuI TTCGAA 1 cut(s) 1020
SinI GGWCC 5 cut(s) 74, 152, 188, 498, 937
SmiMI CAYNNNNRTG 3 cut(s) 324, 434, 977
Sse9I AATT 2 cut(s) 216, 475
SsiI CCGC 6 cut(s) 273, 296, 699, 779, 828, 906
SspMI CTAG 1 cut(s) 230
StyD4I CCNGG 2 cut(s) 790, 953
TaaI ACNGT 5 cut(s) 106, 212, 524, 653, 674
TaiI ACGT 6 cut(s) 324, 448, 721, 740, 826, 904
TaqI TCGA 6 cut(s) 214, 252, 466, 693, 884, 1020
TasI AATT 2 cut(s) 216, 475
TauI GCSGC 1 cut(s) 908
TfiI GAWTC 3 cut(s) 92, 130, 831
Tru1I TTAA 3 cut(s) 222, 402, 662
Tru9I TTAA 3 cut(s) 222, 402, 662
TscAI CASTG 2 cut(s) 61, 367
TseFI GTSAC 4 cut(s) 52, 262, 365, 616
Tsp45I GTSAC 4 cut(s) 52, 262, 365, 616
TspDTI ATGAA 4 cut(s) 20, 608, 947, 1047
TspGWI ACGGA 3 cut(s) 113, 511, 556
TspRI CASTG 2 cut(s) 61, 367
Van91I CCANNNNNTGG 2 cut(s) 83, 419
VpaK11BI GGWCC 5 cut(s) 74, 152, 188, 498, 937
XceI RCATGY 1 cut(s) 1120
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
XmiI GTMKAC 2 cut(s) 510, 586
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.