Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0023902

Physical Location & Seq

Genomic Coordinates Forward (+)

4342 .. 4818

Gene Structure 477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G01010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTTCAATACTGTTTCCAACAAAAAGATTGTTGTCCTCGAGTTCGCCTTCAAGAAAGACACGAGAGAGACTCCAGCCATTGACGTCTGCAAAGGTTTGTTAGGAGACAAGGCCCGAATCAGCATCTATGATCCACAAGTCACGGAAGAACAAATCCAAAGAGACTTAACCATGAACACATTCGACTGGGACCATCCACTTCACCTCCAACCCATGAGTCCAACCACTGTGAAACAAGTCTCAGTTGCTTGGGACGCTTACGCTGCCACCAAAGACGCCCACGGAATCTGCTTGTTAACCGAGTGGGACGAGTATAAGACGCTTGACTATGAGCGGATTTTTGAAAACATGCAGAAACCAGCGTTTGTCTTCGATGGCAGAAATGTTTTTGATGCAGAGAAGCTGAGGAAGATAGGGTTTATTGTTTACTCTATTGGTAAGCCGTTGGACCAGTGGCACATGCCTGCTCTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003979 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0006022 GO:0006023 GO:0006024 GO:0006065 GO:0006082 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009225 GO:0009226 GO:0009664 GO:0009987 GO:0010393 GO:0016043 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0017144 GO:0018130 GO:0019438 GO:0019752 GO:0030203 GO:0030312 GO:0034641 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045488 GO:0046394 GO:0046398 GO:0046483 GO:0048046 GO:0052546 GO:0055086 GO:0055114 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

UDPG_MGDP_dh UDPG_MGDP_dh_C UDPG_MGDP_dh_N

Protein Analysis

158

Amino Acids

18.26

Weight (kDa)

5.55

Isoelectric Point (pI)

31.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPG_MGDP_dh_C	PF03720	13 - 131	2.1e-24	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0023902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01010
pyrus_communis	pycom07g00980 pycom16g05510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	87
AccBSI	CCGCTC	1 cut(s)	334
AciI	CCGC	1 cut(s)	334
AclWI	GGATC	1 cut(s)	125
AcyI	GRCGYC	2 cut(s)	84, 276
AgsI	TTSAA	3 cut(s)	7, 52, 344
AluBI	AGCT	1 cut(s)	403
AluI	AGCT	1 cut(s)	403
Alw26I	GTCTC	4 cut(s)	62, 99, 156, 244
AlwI	GGATC	1 cut(s)	125
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	263
Asp700I	GAANNNNTTC	1 cut(s)	179
AspS9I	GGNCC	3 cut(s)	112, 190, 448
AsuHPI	GGTGA	1 cut(s)	194
AvaI	CYCGRG	1 cut(s)	38
AvaII	GGWCC	2 cut(s)	190, 448
BauI	CACGAG	1 cut(s)	61
BbsI	GAAGAC	1 cut(s)	361
BbvCI	CCTCAGC	1 cut(s)	404
BbvI	GCAGC	1 cut(s)	250
BccI	CCATC	2 cut(s)	201, 368
BceAI	ACGGC	1 cut(s)	427
BcoDI	GTCTC	4 cut(s)	62, 99, 156, 244
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
Bme18I	GGWCC	2 cut(s)	190, 448
BmeT110I	CYCGRG	1 cut(s)	38
BmgT120I	GGNCC	3 cut(s)	112, 190, 448
BmiI	GGNNCC	1 cut(s)	191
BmrI	ACTGGG	1 cut(s)	196
BmsI	GCATC	2 cut(s)	132, 382
BmuI	ACTGGG	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	361
BplI	GAGNNNNNCTC	2 cut(s)	55, 87
BpmI	CTGGAG	1 cut(s)	57
Bpu10I	CCTNAGC	1 cut(s)	404
BsaHI	GRCGYC	2 cut(s)	84, 276
BsaJI	CCNNGG	1 cut(s)	280
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bse1I	ACTGG	2 cut(s)	191, 451
BseDI	CCNNGG	1 cut(s)	280
BseGI	GGATG	1 cut(s)	193
BseMII	CTCAG	2 cut(s)	255, 395
BseNI	ACTGG	2 cut(s)	191, 451
BseXI	GCAGC	1 cut(s)	250
BshFI	GGCC	1 cut(s)	113
BsiHKCI	CYCGRG	1 cut(s)	38
BslFI	GGGAC	3 cut(s)	203, 266, 320
BsmAI	GTCTC	4 cut(s)	62, 99, 156, 244
BsmFI	GGGAC	3 cut(s)	203, 266, 320
BsnI	GGCC	1 cut(s)	113
BsoBI	CYCGRG	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	1 cut(s)	334
BspANI	GGCC	1 cut(s)	113
BspCNI	CTCAG	2 cut(s)	254, 396
BspLI	GGNNCC	1 cut(s)	191
BspPI	GGATC	1 cut(s)	125
BsrBI	CCGCTC	1 cut(s)	334
BsrI	ACTGG	2 cut(s)	191, 451
BssECI	CCNNGG	1 cut(s)	280
BssMI	GATC	1 cut(s)	130
BssNI	GRCGYC	2 cut(s)	84, 276
BssSI	CACGAG	1 cut(s)	61
Bst2BI	CACGAG	1 cut(s)	61
Bst4CI	ACNGT	2 cut(s)	13, 229
BstACI	GRCGYC	2 cut(s)	84, 276
BstC8I	GCNNGC	1 cut(s)	465
BstDEI	CTNAG	3 cut(s)	241, 404, 474
BstDSI	CCRYGG	1 cut(s)	280
BstF5I	GGATG	1 cut(s)	193
BstKTI	GATC	1 cut(s)	133
BstMAI	GTCTC	4 cut(s)	62, 99, 156, 244
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 263
BstNSI	RCATGY	2 cut(s)	352, 463
BstV1I	GCAGC	1 cut(s)	250
BstV2I	GAAGAC	1 cut(s)	361
BsuRI	GGCC	1 cut(s)	113
BtgI	CCRYGG	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	193
BtsIMutI	CAGTG	2 cut(s)	225, 458
Cac8I	GCNNGC	1 cut(s)	465
Cfr13I	GGNCC	3 cut(s)	112, 190, 448
CseI	GACGC	3 cut(s)	263, 284, 328
CviAII	CATG	4 cut(s)	172, 214, 349, 460
CviJI	RGCY	4 cut(s)	77, 113, 403, 442
CviKI_1	RGCY	4 cut(s)	77, 113, 403, 442
DdeI	CTNAG	3 cut(s)	241, 404, 474
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
Eco47I	GGWCC	2 cut(s)	190, 448
Eco88I	CYCGRG	1 cut(s)	38
FaeI	CATG	4 cut(s)	175, 217, 352, 463
FaiI	YATR	7 cut(s)	129, 173, 215, 315, 330, 350, 461
FaqI	GGGAC	3 cut(s)	203, 266, 320
FatI	CATG	4 cut(s)	171, 213, 348, 459
Fnu4HI	GCNGC	1 cut(s)	264
FokI	GGATG	1 cut(s)	180
Fsp4HI	GCNGC	1 cut(s)	264
GluI	GCNGC	1 cut(s)	264
GsuI	CTGGAG	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	113
HgaI	GACGC	3 cut(s)	263, 284, 328
Hin1I	GRCGYC	2 cut(s)	84, 276
Hin1II	CATG	4 cut(s)	175, 217, 352, 463
HincII	GTYRAC	1 cut(s)	297
HindII	GTYRAC	1 cut(s)	297
HinfI	GANTC	4 cut(s)	70, 117, 217, 285
HpaI	GTTAAC	1 cut(s)	297
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	2 cut(s)	297, 427
Hpy188III	TCNNGA	1 cut(s)	52
Hpy8I	GTNNAC	2 cut(s)	297, 427
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	2 cut(s)	13, 229
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	3 cut(s)	90, 352, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 263
HpyF3I	CTNAG	3 cut(s)	241, 404, 474
HpySE526I	ACGT	1 cut(s)	84
Hsp92I	GRCGYC	2 cut(s)	84, 276
Hsp92II	CATG	4 cut(s)	175, 217, 352, 463
KspAI	GTTAAC	1 cut(s)	297
Kzo9I	GATC	1 cut(s)	130
LpnPI	CCDG	4 cut(s)	87, 172, 372, 464
Lsp1109I	GCAGC	1 cut(s)	250
LweI	GCATC	2 cut(s)	132, 382
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	1 cut(s)	132
MbiI	CCGCTC	1 cut(s)	334
MboI	GATC	1 cut(s)	130
MboII	GAAGA	3 cut(s)	158, 361, 421
MlyI	GAGTC	2 cut(s)	64, 226
MmeI	TCCRAC	4 cut(s)	42, 232, 245, 426
MnlI	CCTC	3 cut(s)	47, 215, 399
MroXI	GAANNNNTTC	1 cut(s)	179
MseI	TTAA	2 cut(s)	167, 296
MwoI	GCNNNNNNNGC	2 cut(s)	254, 263
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	4 cut(s)	175, 217, 352, 463
NlaIV	GGNNCC	1 cut(s)	191
NmuCI	GTSAC	1 cut(s)	139
NspI	RCATGY	2 cut(s)	352, 463
PaeR7I	CTCGAG	1 cut(s)	38
PdmI	GAANNNNTTC	1 cut(s)	179
PfeI	GAWTC	2 cut(s)	117, 285
PkrI	GCNGC	1 cut(s)	265
PleI	GAGTC	2 cut(s)	64, 225
PpsI	GAGTC	2 cut(s)	64, 225
PspN4I	GGNNCC	1 cut(s)	191
PspPI	GGNCC	3 cut(s)	112, 190, 448
PspXI	VCTCGAGB	1 cut(s)	38
SaqAI	TTAA	2 cut(s)	167, 296
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	3 cut(s)	112, 190, 448
SchI	GAGTC	2 cut(s)	64, 226
SetI	ASST	4 cut(s)	87, 97, 207, 405
SfaNI	GCATC	2 cut(s)	132, 382
Sfr274I	CTCGAG	1 cut(s)	38
SinI	GGWCC	2 cut(s)	190, 448
SlaI	CTCGAG	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
SsiI	CCGC	1 cut(s)	334
TaaI	ACNGT	2 cut(s)	13, 229
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	3 cut(s)	39, 183, 372
TfiI	GAWTC	2 cut(s)	117, 285
Tru1I	TTAA	2 cut(s)	167, 296
Tru9I	TTAA	2 cut(s)	167, 296
TscAI	CASTG	2 cut(s)	232, 458
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	1 cut(s)	263
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	1 cut(s)	188
TspGWI	ACGGA	2 cut(s)	158, 297
TspRI	CASTG	2 cut(s)	232, 458
VpaK11BI	GGWCC	2 cut(s)	190, 448
XceI	RCATGY	2 cut(s)	352, 463
XhoI	CTCGAG	1 cut(s)	38
XmnI	GAANNNNTTC	1 cut(s)	179
ZraI	GACGTC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.