Basic Information
Type: gene
Biological Identity
arabidopsis_thaliana
Physical Location & Seq
Reverse (-)
322460 .. 323282
AT3G01940.1
Length: 213 bp
ATGGGAGGAGCGGACTGGGGGCCGGTGGCGGTTGCGGTGGTGCTGTTCGTAGTGTTATCGCCGGGGCTTCTGTTTCAGTTGCCGGCGAGGAGGAGAGTGTTGGAGTGCGGCAACATGACCACAAGCGGGATCTCAATATTGGTTCATGCCATTCTCTTCTTTGCTATTATCACGATTTTGGTCATCGCCATTCAAATTCACATTCACATCTAA
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Protein Analysis
8.06
Isoelectric Point (pI)
| Domain Name |
Pfam ID |
Position |
E-value |
Description |
| DUF3339 |
PF11820 |
4 - 69 |
4.4e-31 |
Protein of unknown function (DUF3339) |
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...
Gene Family Tree
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Publication-ready
Orthologous Genes
(Group: OG0023573)
Restriction Enzyme Sites
| Enzyme |
Recognition Site |
Cut Count |
Positions (bp) |
| AccBSI |
CCGCTC |
1 cut(s)
|
11 |
| AciI |
CCGC |
5 cut(s)
|
11, 29, 35, 108, 126 |
| AclWI |
GGATC |
1 cut(s)
|
137 |
| AcsI |
RAATTY |
1 cut(s)
|
195 |
| AfiI |
CCNNNNNNNGG |
1 cut(s)
|
126 |
| AgsI |
TTSAA |
1 cut(s)
|
194 |
| AlwI |
GGATC |
1 cut(s)
|
137 |
| AoxI |
GGCC |
1 cut(s)
|
20 |
| ApoI |
RAATTY |
1 cut(s)
|
195 |
| AspS9I |
GGNCC |
1 cut(s)
|
20 |
| AsuC2I |
CCSGG |
1 cut(s)
|
63 |
| BcnI |
CCSGG |
1 cut(s)
|
63 |
| BisI |
GCNGC |
1 cut(s)
|
109 |
| BlsI |
GCNGC |
1 cut(s)
|
110 |
| Bme1390I |
CCNGG |
1 cut(s)
|
63 |
| BmgT120I |
GGNCC |
1 cut(s)
|
20 |
| BmiI |
GGNNCC |
1 cut(s)
|
21 |
| BmrFI |
CCNGG |
1 cut(s)
|
63 |
| BmrI |
ACTGGG |
1 cut(s)
|
25 |
| BmuI |
ACTGGG |
1 cut(s)
|
25 |
| BpuMI |
CCSGG |
1 cut(s)
|
63 |
| BsaJI |
CCNNGG |
1 cut(s)
|
62 |
| Bsc4I |
CCNNNNNNNGG |
1 cut(s)
|
126 |
| Bse118I |
RCCGGY |
2 cut(s)
|
22, 82 |
| Bse1I |
ACTGG |
1 cut(s)
|
20 |
| BseDI |
CCNNGG |
1 cut(s)
|
62 |
| BseLI |
CCNNNNNNNGG |
1 cut(s)
|
126 |
| BseNI |
ACTGG |
1 cut(s)
|
20 |
| BseRI |
GAGGAG |
3 cut(s)
|
21, 103, 106 |
| BshFI |
GGCC |
1 cut(s)
|
22 |
| BsiSI |
CCGG |
3 cut(s)
|
23, 62, 83 |
| BslI |
CCNNNNNNNGG |
1 cut(s)
|
126 |
| BsnI |
GGCC |
1 cut(s)
|
22 |
| Bsp143I |
GATC |
1 cut(s)
|
129 |
| BspACI |
CCGC |
5 cut(s)
|
11, 29, 35, 108, 126 |
| BspANI |
GGCC |
1 cut(s)
|
22 |
| BspLI |
GGNNCC |
1 cut(s)
|
21 |
| BspPI |
GGATC |
1 cut(s)
|
137 |
| BsrBI |
CCGCTC |
1 cut(s)
|
11 |
| BsrFI |
RCCGGY |
2 cut(s)
|
22, 82 |
| BsrI |
ACTGG |
1 cut(s)
|
20 |
| BssAI |
RCCGGY |
2 cut(s)
|
22, 82 |
| BssECI |
CCNNGG |
1 cut(s)
|
62 |
| BssMI |
GATC |
1 cut(s)
|
129 |
| Bst6I |
CTCTTC |
1 cut(s)
|
161 |
| BstC8I |
GCNNGC |
1 cut(s)
|
84 |
| BstKTI |
GATC |
1 cut(s)
|
132 |
| BstMBI |
GATC |
1 cut(s)
|
129 |
| BstSCI |
CCNGG |
1 cut(s)
|
61 |
| BstX2I |
RGATCY |
1 cut(s)
|
129 |
| BstYI |
RGATCY |
1 cut(s)
|
129 |
| BsuRI |
GGCC |
1 cut(s)
|
22 |
| BtgZI |
GCGATG |
1 cut(s)
|
169 |
| Cac8I |
GCNNGC |
1 cut(s)
|
84 |
| Cfr10I |
RCCGGY |
2 cut(s)
|
22, 82 |
| Cfr13I |
GGNCC |
1 cut(s)
|
20 |
| CviAII |
CATG |
2 cut(s)
|
115, 146 |
| CviJI |
RGCY |
2 cut(s)
|
22, 67 |
| CviKI_1 |
RGCY |
2 cut(s)
|
22, 67 |
| DpnI |
GATC |
1 cut(s)
|
131 |
| DpnII |
GATC |
1 cut(s)
|
129 |
| Eam1104I |
CTCTTC |
1 cut(s)
|
161 |
| EarI |
CTCTTC |
1 cut(s)
|
161 |
| FaeI |
CATG |
2 cut(s)
|
118, 149 |
| FaiI |
YATR |
2 cut(s)
|
116, 147 |
| FatI |
CATG |
2 cut(s)
|
114, 145 |
| FauI |
CCCGC |
1 cut(s)
|
119 |
| Fnu4HI |
GCNGC |
1 cut(s)
|
109 |
| Fsp4HI |
GCNGC |
1 cut(s)
|
109 |
| GluI |
GCNGC |
1 cut(s)
|
109 |
| HaeIII |
GGCC |
1 cut(s)
|
22 |
| HapII |
CCGG |
3 cut(s)
|
23, 62, 83 |
| Hin1II |
CATG |
2 cut(s)
|
118, 149 |
| HpaII |
CCGG |
3 cut(s)
|
23, 62, 83 |
| Hpy188III |
TCNNGA |
1 cut(s)
|
172 |
| Hsp92II |
CATG |
2 cut(s)
|
118, 149 |
| KroI |
GCCGGC |
1 cut(s)
|
82 |
| KroNI |
GCCGGC |
1 cut(s)
|
84 |
| Kzo9I |
GATC |
1 cut(s)
|
129 |
| LmnI |
GCTCC |
1 cut(s)
|
8 |
| LpnPI |
CCDG |
3 cut(s)
|
36, 75, 96 |
| MalI |
GATC |
1 cut(s)
|
131 |
| MbiI |
CCGCTC |
1 cut(s)
|
11 |
| MboI |
GATC |
1 cut(s)
|
129 |
| MboII |
GAAGA |
1 cut(s)
|
148 |
| MflI |
RGATCY |
1 cut(s)
|
129 |
| MluCI |
AATT |
1 cut(s)
|
195 |
| MmeI |
TCCRAC |
1 cut(s)
|
81 |
| MnlI |
CCTC |
2 cut(s)
|
81, 84 |
| MroNI |
GCCGGC |
1 cut(s)
|
82 |
| MspI |
CCGG |
3 cut(s)
|
23, 62, 83 |
| MspR9I |
CCNGG |
1 cut(s)
|
63 |
| NaeI |
GCCGGC |
1 cut(s)
|
84 |
| NciI |
CCSGG |
1 cut(s)
|
63 |
| NdeII |
GATC |
1 cut(s)
|
129 |
| NgoMIV |
GCCGGC |
1 cut(s)
|
82 |
| NlaIII |
CATG |
2 cut(s)
|
118, 149 |
| NlaIV |
GGNNCC |
1 cut(s)
|
21 |
| PdiI |
GCCGGC |
1 cut(s)
|
84 |
| PkrI |
GCNGC |
1 cut(s)
|
110 |
| PspN4I |
GGNNCC |
1 cut(s)
|
21 |
| PspPI |
GGNCC |
1 cut(s)
|
20 |
| PsuI |
RGATCY |
1 cut(s)
|
129 |
| SatI |
GCNGC |
1 cut(s)
|
109 |
| Sau3AI |
GATC |
1 cut(s)
|
129 |
| Sau96I |
GGNCC |
1 cut(s)
|
20 |
| ScrFI |
CCNGG |
1 cut(s)
|
63 |
| Sse9I |
AATT |
1 cut(s)
|
195 |
| SsiI |
CCGC |
5 cut(s)
|
11, 29, 35, 108, 126 |
| SspI |
AATATT |
1 cut(s)
|
138 |
| StyD4I |
CCNGG |
1 cut(s)
|
61 |
| TasI |
AATT |
1 cut(s)
|
195 |
| TauI |
GCSGC |
1 cut(s)
|
111 |
| TspDTI |
ATGAA |
1 cut(s)
|
134 |
| XapI |
RAATTY |
1 cut(s)
|
195 |
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.