pycom13g10570

Protein of unknown function (DUF3339)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0023573
Physical Location & Seq
Forward (+)
7073441 .. 7073650
210 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g10570.1

Sequence Viewer

Length: 210 bp
ATGGCGGATTGGGGGCCGGTGGTGATAGCTGTGGTGCTGTTTGTGCTTCTGAGTCCGGGGCTGCTGTTCCAACTGCCGGGGAGGGGCAAGGTGGTGGAGTTTGGGAACATGCATACGAGCGGGATATCGATCCTCGTCCACACCATCATCTTCTTCGGCCTCCTCACCATCTTCCTCATCGCTGTTGGCGTTCACATCTACACTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3339

Protein Analysis

70

Amino Acids

7.41

Weight (kDa)

6.81

Isoelectric Point (pI)

26.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3339 PF11820 1 - 67 4e-36 Protein of unknown function (DUF3339)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0023573)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01940
prunus_persica Prupe.1G223800_v2.0.a1
pyrus_communis pycom13g10570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 120
AciI CCGC 2 cut(s) 5, 120
AclWI GGATC 1 cut(s) 124
AfiI CCNNNNNNNGG 2 cut(s) 76, 83
AluBI AGCT 1 cut(s) 29
AluI AGCT 1 cut(s) 29
AlwI GGATC 1 cut(s) 124
AoxI GGCC 2 cut(s) 14, 157
ApeKI GCWGC 1 cut(s) 61
AspS9I GGNCC 1 cut(s) 14
AsuC2I CCSGG 2 cut(s) 57, 78
AsuHPI GGTGA 2 cut(s) 34, 157
BbvI GCAGC 1 cut(s) 48
BccI CCATC 2 cut(s) 152, 176
BcnI CCSGG 2 cut(s) 57, 78
BisI GCNGC 1 cut(s) 62
BlsI GCNGC 1 cut(s) 63
Bme1390I CCNGG 2 cut(s) 57, 78
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 15
BmrFI CCNGG 2 cut(s) 57, 78
BpuMI CCSGG 2 cut(s) 57, 78
Bsa29I ATCGAT 1 cut(s) 128
BsaBI GATNNNNATC 1 cut(s) 128
BsaJI CCNNGG 2 cut(s) 56, 77
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 83
Bse118I RCCGGY 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 208
Bse8I GATNNNNATC 1 cut(s) 128
BseCI ATCGAT 1 cut(s) 128
BseDI CCNNGG 2 cut(s) 56, 77
BseJI GATNNNNATC 1 cut(s) 128
BseLI CCNNNNNNNGG 2 cut(s) 76, 83
BseMII CTCAG 1 cut(s) 41
BseNI ACTGG 1 cut(s) 208
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 1 cut(s) 48
BshFI GGCC 2 cut(s) 16, 159
BshVI ATCGAT 1 cut(s) 128
BsiSI CCGG 3 cut(s) 17, 56, 77
BslI CCNNNNNNNGG 2 cut(s) 76, 83
BsnI GGCC 2 cut(s) 16, 159
Bsp143I GATC 1 cut(s) 129
BspACI CCGC 2 cut(s) 5, 120
BspANI GGCC 2 cut(s) 16, 159
BspCNI CTCAG 1 cut(s) 42
BspDI ATCGAT 1 cut(s) 128
BspLI GGNNCC 1 cut(s) 15
BspPI GGATC 1 cut(s) 124
BsrBI CCGCTC 1 cut(s) 120
BsrFI RCCGGY 1 cut(s) 16
BsrI ACTGG 1 cut(s) 208
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 2 cut(s) 56, 77
BssMI GATC 1 cut(s) 129
BstDEI CTNAG 1 cut(s) 50
BstKTI GATC 1 cut(s) 132
BstMBI GATC 1 cut(s) 129
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstNSI RCATGY 1 cut(s) 112
BstSCI CCNGG 2 cut(s) 55, 76
BstV1I GCAGC 1 cut(s) 48
Bsu15I ATCGAT 1 cut(s) 128
BsuRI GGCC 2 cut(s) 16, 159
BsuTUI ATCGAT 1 cut(s) 128
BtgZI GCGATG 1 cut(s) 163
BtsIMutI CAGTG 1 cut(s) 201
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 14
ClaI ATCGAT 1 cut(s) 128
CviAII CATG 1 cut(s) 109
CviJI RGCY 4 cut(s) 16, 29, 61, 159
CviKI_1 RGCY 4 cut(s) 16, 29, 61, 159
DdeI CTNAG 1 cut(s) 50
DpnI GATC 1 cut(s) 131
DpnII GATC 1 cut(s) 129
EciI GGCGGA 1 cut(s) 20
Eco32I GATATC 1 cut(s) 126
EcoRV GATATC 1 cut(s) 126
EcoT22I ATGCAT 1 cut(s) 114
FaeI CATG 1 cut(s) 112
FaiI YATR 2 cut(s) 110, 114
FatI CATG 1 cut(s) 108
FauI CCCGC 1 cut(s) 113
Fnu4HI GCNGC 1 cut(s) 62
Fsp4HI GCNGC 1 cut(s) 62
GluI GCNGC 1 cut(s) 62
HaeIII GGCC 2 cut(s) 16, 159
HapII CCGG 3 cut(s) 17, 56, 77
Hin1II CATG 1 cut(s) 112
HinfI GANTC 1 cut(s) 52
HpaII CCGG 3 cut(s) 17, 56, 77
HphI GGTGA 2 cut(s) 34, 157
Hpy166II GTNNAC 2 cut(s) 139, 193
Hpy188I TCNGA 1 cut(s) 51
Hpy8I GTNNAC 2 cut(s) 139, 193
HpyCH4V TGCA 1 cut(s) 112
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
HpyF3I CTNAG 1 cut(s) 50
Hsp92II CATG 1 cut(s) 112
Kzo9I GATC 1 cut(s) 129
LpnPI CCDG 4 cut(s) 30, 69, 90, 189
Lsp1109I GCAGC 1 cut(s) 48
MalI GATC 1 cut(s) 131
MbiI CCGCTC 1 cut(s) 120
MboI GATC 1 cut(s) 129
MboII GAAGA 3 cut(s) 142, 145, 163
MlyI GAGTC 1 cut(s) 61
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 5 cut(s) 75, 143, 170, 173, 185
Mph1103I ATGCAT 1 cut(s) 114
MspI CCGG 3 cut(s) 17, 56, 77
MspR9I CCNGG 2 cut(s) 57, 78
MwoI GCNNNNNNNGC 1 cut(s) 43
NciI CCSGG 2 cut(s) 57, 78
NdeII GATC 1 cut(s) 129
NlaIII CATG 1 cut(s) 112
NlaIV GGNNCC 1 cut(s) 15
NsiI ATGCAT 1 cut(s) 114
NspI RCATGY 1 cut(s) 112
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PkrI GCNGC 1 cut(s) 63
PleI GAGTC 1 cut(s) 60
PpsI GAGTC 1 cut(s) 60
PspN4I GGNNCC 1 cut(s) 15
PspPI GGNCC 1 cut(s) 14
SatI GCNGC 1 cut(s) 62
Sau3AI GATC 1 cut(s) 129
Sau96I GGNCC 1 cut(s) 14
SchI GAGTC 1 cut(s) 61
ScrFI CCNGG 2 cut(s) 57, 78
SetI ASST 2 cut(s) 31, 93
SsiI CCGC 2 cut(s) 5, 120
StyD4I CCNGG 2 cut(s) 55, 76
TaqI TCGA 1 cut(s) 128
TscAI CASTG 1 cut(s) 208
TseI GCWGC 1 cut(s) 61
TspRI CASTG 1 cut(s) 208
XceI RCATGY 1 cut(s) 112
Zsp2I ATGCAT 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.