AT3G02190

structural constituent of ribosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0020156
Physical Location & Seq
Reverse (-)
405756 .. 406487
732 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G02190.1

Sequence Viewer

Length: 156 bp
ATGCCGTCGCACAAGTCGTTCATGATCAAAAAGAAGCTAGGGAAGAAGATGAGACAGAACAGACCGATCCCTAATTGGATCCGTCTCCGTACTGATAACAAAATCAGGTACAACGCTAAGCGTAGGCACTGGCGCCGTACCAAGCTAGGATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000184 GO:0000956 GO:0002181 GO:0002227 GO:0002251 GO:0002376 GO:0002385 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006952 GO:0006955 GO:0006959 GO:0007276 GO:0007283 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009617 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015934 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0019538 GO:0019730 GO:0019731 GO:0019953 GO:0022414 GO:0022625 GO:0022626 GO:0032501 GO:0032504 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0034645 GO:0034655 GO:0042742 GO:0042788 GO:0042886 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044421 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044703 GO:0045047 GO:0045087 GO:0045184 GO:0046483 GO:0046700 GO:0046907 GO:0048232 GO:0048519 GO:0048609 GO:0050789 GO:0050830 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0051707 GO:0060255 GO:0061844 GO:0065007 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko00970 ko01100 ko03010 map00970 map01100 map03010
Pfam Domains
Protein Families
Ribosomal_L39

Protein Analysis

51

Amino Acids

6.42

Weight (kDa)

12.0

Isoelectric Point (pI)

67.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L39 PF00832 9 - 49 7e-22 Ribosomal L39 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02190
fragaria_vesca FvH4_2g40780 FvH4_2g40780
rosa_chinensis RchiOBHm_Chr6g0299801
rosa_multiflora Rmu_ssc0000158.1_g000004
rosa_rugosa Rorug06G0292400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 132
AclWI GGATC 3 cut(s) 61, 73, 86
AcyI GRCGYC 1 cut(s) 133
AfaI GTAC 3 cut(s) 91, 110, 139
AjuI GAANNNNNNNTTGG 1 cut(s) 134
AluBI AGCT 2 cut(s) 37, 145
AluI AGCT 2 cut(s) 37, 145
Alw26I GTCTC 2 cut(s) 46, 89
AlwI GGATC 3 cut(s) 61, 73, 86
AspLEI GCGC 1 cut(s) 135
BamHI GGATCC 1 cut(s) 78
BanI GGYRCC 1 cut(s) 132
BceAI ACGGC 1 cut(s) 120
BclI TGATCA 1 cut(s) 24
BcoDI GTCTC 2 cut(s) 46, 89
BfaI CTAG 3 cut(s) 38, 146, 154
BfoI RGCGCY 1 cut(s) 136
BlpI GCTNAGC 1 cut(s) 117
BmiI GGNNCC 2 cut(s) 80, 134
Bpu1102I GCTNAGC 1 cut(s) 117
BsaHI GRCGYC 1 cut(s) 133
Bse1I ACTGG 1 cut(s) 134
BseNI ACTGG 1 cut(s) 134
BshNI GGYRCC 1 cut(s) 132
BsmAI GTCTC 2 cut(s) 46, 89
BsmBI CGTCTC 1 cut(s) 89
Bsp143I GATC 3 cut(s) 24, 66, 78
Bsp1720I GCTNAGC 1 cut(s) 117
BspHI TCATGA 1 cut(s) 21
BspLI GGNNCC 2 cut(s) 80, 134
BspPI GGATC 3 cut(s) 61, 73, 86
BspT107I GGYRCC 1 cut(s) 132
BsrI ACTGG 1 cut(s) 134
BssMI GATC 3 cut(s) 24, 66, 78
BssNI GRCGYC 1 cut(s) 133
BstACI GRCGYC 1 cut(s) 133
BstDEI CTNAG 1 cut(s) 117
BstH2I RGCGCY 1 cut(s) 136
BstHHI GCGC 1 cut(s) 135
BstKTI GATC 3 cut(s) 27, 69, 81
BstMAI GTCTC 2 cut(s) 46, 89
BstMBI GATC 3 cut(s) 24, 66, 78
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 127
CciI TCATGA 1 cut(s) 21
CfoI GCGC 1 cut(s) 135
Csp6I GTAC 3 cut(s) 90, 109, 138
CviAII CATG 1 cut(s) 22
CviJI RGCY 2 cut(s) 37, 145
CviKI_1 RGCY 2 cut(s) 37, 145
CviQI GTAC 3 cut(s) 90, 109, 138
DdeI CTNAG 1 cut(s) 117
DinI GGCGCC 1 cut(s) 134
DpnI GATC 3 cut(s) 26, 68, 80
DpnII GATC 3 cut(s) 24, 66, 78
EgeI GGCGCC 1 cut(s) 134
EheI GGCGCC 1 cut(s) 134
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 1 cut(s) 25
FaiI YATR 1 cut(s) 23
FatI CATG 1 cut(s) 21
FbaI TGATCA 1 cut(s) 24
FspBI CTAG 3 cut(s) 38, 146, 154
GlaI GCGC 1 cut(s) 134
HaeII RGCGCY 1 cut(s) 136
HhaI GCGC 1 cut(s) 135
Hin1I GRCGYC 1 cut(s) 133
Hin1II CATG 1 cut(s) 25
Hin6I GCGC 1 cut(s) 133
HinP1I GCGC 1 cut(s) 133
HinfI GANTC 1 cut(s) 150
Hpy188III TCNNGA 1 cut(s) 22
Hpy99I CGWCG 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 117
Hsp92I GRCGYC 1 cut(s) 133
Hsp92II CATG 1 cut(s) 25
HspAI GCGC 1 cut(s) 133
KasI GGCGCC 1 cut(s) 132
Ksp22I TGATCA 1 cut(s) 24
Kzo9I GATC 3 cut(s) 24, 66, 78
LpnPI CCDG 2 cut(s) 91, 115
MaeI CTAG 3 cut(s) 38, 146, 154
MalI GATC 3 cut(s) 26, 68, 80
MboI GATC 3 cut(s) 24, 66, 78
MboII GAAGA 2 cut(s) 55, 58
MflI RGATCY 1 cut(s) 78
MluCI AATT 1 cut(s) 73
Mly113I GGCGCC 1 cut(s) 133
NarI GGCGCC 1 cut(s) 133
NdeII GATC 3 cut(s) 24, 66, 78
NlaIII CATG 1 cut(s) 25
NlaIV GGNNCC 2 cut(s) 80, 134
PagI TCATGA 1 cut(s) 21
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PfeI GAWTC 1 cut(s) 150
PluTI GGCGCC 1 cut(s) 136
PspN4I GGNNCC 2 cut(s) 80, 134
PsuI RGATCY 1 cut(s) 78
RsaI GTAC 3 cut(s) 91, 110, 139
RsaNI GTAC 3 cut(s) 90, 109, 138
Sau3AI GATC 3 cut(s) 24, 66, 78
SetI ASST 3 cut(s) 39, 110, 147
SfoI GGCGCC 1 cut(s) 134
SgeI CNNG 5 cut(s) 25, 34, 50, 118, 142
Sse9I AATT 1 cut(s) 73
SspDI GGCGCC 1 cut(s) 132
SspMI CTAG 3 cut(s) 38, 146, 154
TaqII GACCGA 1 cut(s) 79
TasI AATT 1 cut(s) 73
TfiI GAWTC 1 cut(s) 150
TscAI CASTG 1 cut(s) 134
TspDTI ATGAA 1 cut(s) 10
TspGWI ACGGA 2 cut(s) 71, 77
TspRI CASTG 1 cut(s) 134
XspI CTAG 3 cut(s) 38, 146, 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.