FvH4_2g40780

60s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0020156
Physical Location & Seq
Reverse (-)
28991245 .. 28993112
1868 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g40780.t2

Sequence Viewer

Length: 252 bp
ATGAGCGTTTCCAACGAAATAAGGGTTTCTGTCTCATATTTTCTCTCGCAGTCGCCGCGGAGCAGGAAGAAGAAGAAGAAGAAGAAGAAGATCAAGATGCCTTCACACAAGACCTTCATCATCAAGAAGAAGCTCGGCAAGAAGATGAGGCAGAACAGGCCCATCCCTCACTGGATCCGTCTCAGGACTGACAACAAAATCAGGTACAACGCTAAGCGCAGGCACTGGCGCCGCACCAAGCTCGGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L39

Protein Analysis

84

Amino Acids

10.22

Weight (kDa)

12.0

Isoelectric Point (pI)

76.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L39 PF00832 41 - 81 1.1e-21 Ribosomal L39 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02190
fragaria_vesca FvH4_2g40780 FvH4_2g40780
rosa_chinensis RchiOBHm_Chr6g0299801
rosa_multiflora Rmu_ssc0000158.1_g000004
rosa_rugosa Rorug06G0292400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 228
AccII CGCG 1 cut(s) 58
AciI CCGC 3 cut(s) 56, 58, 232
AclWI GGATC 2 cut(s) 169, 182
AcyI GRCGYC 1 cut(s) 229
AfaI GTAC 1 cut(s) 206
AjuI GAANNNNNNNTTGG 1 cut(s) 230
AluBI AGCT 2 cut(s) 133, 241
AluI AGCT 2 cut(s) 133, 241
Alw26I GTCTC 2 cut(s) 37, 185
AlwI GGATC 2 cut(s) 169, 182
AlwNI CAGNNNCTG 1 cut(s) 225
AoxI GGCC 1 cut(s) 158
AspLEI GCGC 2 cut(s) 219, 231
AspS9I GGNCC 1 cut(s) 159
BamHI GGATCC 1 cut(s) 174
BanI GGYRCC 1 cut(s) 228
BccI CCATC 1 cut(s) 170
BcgI CGANNNNNNTGC 1 cut(s) 223
BcoDI GTCTC 2 cut(s) 37, 185
BfoI RGCGCY 1 cut(s) 232
BisI GCNGC 2 cut(s) 56, 232
BlpI GCTNAGC 1 cut(s) 213
BlsI GCNGC 2 cut(s) 57, 233
BmgT120I GGNCC 1 cut(s) 159
BmiI GGNNCC 2 cut(s) 176, 230
BmsI GCATC 1 cut(s) 87
Bpu1102I GCTNAGC 1 cut(s) 213
BsaHI GRCGYC 1 cut(s) 229
BsaJI CCNNGG 1 cut(s) 56
Bse1I ACTGG 2 cut(s) 176, 230
BseDI CCNNGG 1 cut(s) 56
BseGI GGATG 1 cut(s) 162
BseMII CTCAG 1 cut(s) 196
BseNI ACTGG 2 cut(s) 176, 230
Bsh1236I CGCG 1 cut(s) 58
BshFI GGCC 1 cut(s) 160
BshNI GGYRCC 1 cut(s) 228
BsmAI GTCTC 2 cut(s) 37, 185
BsmBI CGTCTC 1 cut(s) 185
BsnI GGCC 1 cut(s) 160
Bsp143I GATC 2 cut(s) 90, 174
Bsp1720I GCTNAGC 1 cut(s) 213
BspACI CCGC 3 cut(s) 56, 58, 232
BspANI GGCC 1 cut(s) 160
BspCNI CTCAG 1 cut(s) 195
BspFNI CGCG 1 cut(s) 58
BspLI GGNNCC 2 cut(s) 176, 230
BspPI GGATC 2 cut(s) 169, 182
BspT107I GGYRCC 1 cut(s) 228
BsrI ACTGG 2 cut(s) 176, 230
BssECI CCNNGG 1 cut(s) 56
BssMI GATC 2 cut(s) 90, 174
BssNI GRCGYC 1 cut(s) 229
BstACI GRCGYC 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 221
BstDEI CTNAG 2 cut(s) 182, 213
BstDSI CCRYGG 1 cut(s) 56
BstF5I GGATG 1 cut(s) 162
BstFNI CGCG 1 cut(s) 58
BstH2I RGCGCY 1 cut(s) 232
BstHHI GCGC 2 cut(s) 219, 231
BstKTI GATC 2 cut(s) 93, 177
BstMAI GTCTC 2 cut(s) 37, 185
BstMBI GATC 2 cut(s) 90, 174
BstMWI GCNNNNNNNGC 2 cut(s) 55, 157
BstUI CGCG 1 cut(s) 58
BstX2I RGATCY 1 cut(s) 174
BstYI RGATCY 1 cut(s) 174
BsuRI GGCC 1 cut(s) 160
BtgI CCRYGG 1 cut(s) 56
BtsCI GGATG 1 cut(s) 162
BtsIMutI CAGTG 2 cut(s) 169, 223
Cac8I GCNNGC 1 cut(s) 221
CaiI CAGNNNCTG 1 cut(s) 225
CfoI GCGC 2 cut(s) 219, 231
Cfr13I GGNCC 1 cut(s) 159
Cfr42I CCGCGG 1 cut(s) 59
Csp6I GTAC 1 cut(s) 205
CviJI RGCY 4 cut(s) 133, 160, 241, 246
CviKI_1 RGCY 4 cut(s) 133, 160, 241, 246
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 2 cut(s) 182, 213
DinI GGCGCC 1 cut(s) 230
DpnI GATC 2 cut(s) 92, 176
DpnII GATC 2 cut(s) 90, 174
EgeI GGCGCC 1 cut(s) 230
EheI GGCGCC 1 cut(s) 230
Esp3I CGTCTC 1 cut(s) 185
FaiI YATR 1 cut(s) 37
FalI AAGNNNNNCTT 1 cut(s) 230
Fnu4HI GCNGC 2 cut(s) 56, 232
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 2 cut(s) 56, 232
GlaI GCGC 2 cut(s) 218, 230
GluI GCNGC 2 cut(s) 56, 232
HaeII RGCGCY 1 cut(s) 232
HaeIII GGCC 1 cut(s) 160
HhaI GCGC 2 cut(s) 219, 231
Hin1I GRCGYC 1 cut(s) 229
Hin6I GCGC 2 cut(s) 217, 229
HinP1I GCGC 2 cut(s) 217, 229
Hpy188I TCNGA 1 cut(s) 251
Hpy188III TCNNGA 3 cut(s) 94, 124, 184
HpyAV CCTTC 2 cut(s) 111, 124
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 157
HpyF3I CTNAG 2 cut(s) 182, 213
Hsp92I GRCGYC 1 cut(s) 229
HspAI GCGC 2 cut(s) 217, 229
KasI GGCGCC 1 cut(s) 228
KspI CCGCGG 1 cut(s) 59
Kzo9I GATC 2 cut(s) 90, 174
LmnI GCTCC 1 cut(s) 60
LpnPI CCDG 7 cut(s) 49, 142, 157, 169, 187, 205, 211
LweI GCATC 1 cut(s) 87
MalI GATC 2 cut(s) 92, 176
MboI GATC 2 cut(s) 90, 174
MflI RGATCY 1 cut(s) 174
Mly113I GGCGCC 1 cut(s) 229
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 2 cut(s) 141, 177
MspA1I CMGCKG 1 cut(s) 58
MvnI CGCG 1 cut(s) 58
MwoI GCNNNNNNNGC 2 cut(s) 55, 157
NarI GGCGCC 1 cut(s) 229
NdeII GATC 2 cut(s) 90, 174
NlaIV GGNNCC 2 cut(s) 176, 230
NmeAIII GCCGAG 2 cut(s) 114, 222
PkrI GCNGC 2 cut(s) 57, 233
PluTI GGCGCC 1 cut(s) 232
PspN4I GGNNCC 2 cut(s) 176, 230
PspPI GGNCC 1 cut(s) 159
PstNI CAGNNNCTG 1 cut(s) 225
PsuI RGATCY 1 cut(s) 174
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SacII CCGCGG 1 cut(s) 59
SatI GCNGC 2 cut(s) 56, 232
Sau3AI GATC 2 cut(s) 90, 174
Sau96I GGNCC 1 cut(s) 159
SetI ASST 4 cut(s) 116, 135, 206, 243
SfaNI GCATC 1 cut(s) 87
SfoI GGCGCC 1 cut(s) 230
Sfr303I CCGCGG 1 cut(s) 59
SgrBI CCGCGG 1 cut(s) 59
SsiI CCGC 3 cut(s) 56, 58, 232
SspDI GGCGCC 1 cut(s) 228
TauI GCSGC 2 cut(s) 58, 234
TscAI CASTG 2 cut(s) 176, 230
TspDTI ATGAA 1 cut(s) 106
TspGWI ACGGA 1 cut(s) 167
TspRI CASTG 2 cut(s) 176, 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.