Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0027096

Physical Location & Seq

Genomic Coordinates Reverse (-)

734892 .. 738629

Gene Structure 3738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G03200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGGCTCCTGTCTCGTTACCTCCAGGTTTCCGATTCCATCCAACAGACGAGGAACTAATTACTTACTATCTAAAAAGAAAGATCAACGGTCTAGAAATCGAACTTGAAGTTATCGCTGAAGTTGATCTTTACAAGTGTGAGCCATGGGACTTACCAGGGAAGTCCTTGCTTCCGAGCAAAGACCAAGAATGGTACTTCTTCAGCCCACGAGACCGGAAGTATCCCAACGGCTCAAGGACAAACCGGGCAACTAAAGGCGGTTATTGGAAGGCTACAGGTAAAGACCGCCGAGTTAGTTGGAGAGACCGAGCCATAGGAACCAAGAAGACATTGGTTTACTACCGTGGGCGCGCGCCACATGGCATAAGAACTGGTTGGGTCATGCACGAATATCGACTTGATGAAACAGAATGTGAGCCTTCTGCATACGGCATGCAGGACGCATATGCACTTTGTCGTGTGTTCAAAAAGATTGTTATTGAAGCTAAGCCAAGAGATCAACATCGGTCATATGTCCACGCGATGTCGAATGTGAGTGGTAATTGCTCATCGAGTTTTGACACTTGTTCGGATCTCGAAATCAGTTCAACTACTCATCAAGTTCAAAACACATTCCAACCGCGATTTGGCAACGAGCGATTTAACTCCAACGCAATCAGCAACGAGGATTGGTCACAATACTACGGTTCTTCTTATAGACCGTTCCCTACTCCATATAAGGTTAACACAGAGATCGAATGTTCAATGTTACAACACAATATATATCTACCACCGTTGCGTGTAGAGAACTCTGCGTTTAGTGATTCCGATTTCTTCACGAGTATGACTCACAACAACGACCATGGCGTTTTCGATGACTTTACTTTTGCTGCAAGTAACTCCAACCACAATAATAGCGTTGGTGATCAAGTGATCCACGTTGGCAATTATGATGAACAATTAATAACATCTAACCGTCATATGAACCAGACTGGTTATATAAAAGAGCAGAAGATCAGATCGAGTTTGGATAATACTGACGAAGATCCAGGATTTCATGGTAACAATACCAATGACAACATAGATATCGATGATTTTCTCTCGTTTGATATATATAACGAGGACAACGTGAATCAAATAGAAGATAATGAAGACGTGAATACAAATGAAACCCTTGATTCATCGGGATTCGAGGTGGTTGAAGAAGAAACTAGATTTAACAACCAAATGCTCATCTCGACATATCAAACGACAAAGATTCTATATCACCAAGTCGTACCTTGTCACACGTTGAAAGTTCACGTCAATCCTATTAGTCACAATGTGGAAGAGAGAACATTGTTCATTGAAGAGGACAAAGATTCTTGGTTACAAAGAGCTGAGAAGATCACGAAGACAAAACTAACACTTTTTAGTTTAATGGCTCAGCAATACTACAAATGTCTTGCTATTTTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0019219 GO:0019222 GO:0022411 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090601 GO:0090602 GO:0090603 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

479

Amino Acids

55.59

Weight (kDa)

5.37

Isoelectric Point (pI)

42.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	7 - 133	6.2e-50	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0027096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03200 AT5G17260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	351, 353, 521, 622
AciI	CCGC	3 cut(s)	258, 286, 620
AclWI	GGATC	3 cut(s)	579, 907, 1019
AcuI	CTGAAG	2 cut(s)	138, 184
AdeI	CACNNNGTG	1 cut(s)	1303
AfaI	GTAC	2 cut(s)	194, 1257
AfiI	CCNNNNNNNGG	1 cut(s)	626
AflIII	ACRYGT	1 cut(s)	1266
AgsI	TTSAA	9 cut(s)	107, 466, 482, 588, 605, 744, 1181, 1273, 1328
AjiI	CACGTC	2 cut(s)	1135, 1282
AjnI	CCWGG	3 cut(s)	22, 154, 1027
AluBI	AGCT	2 cut(s)	485, 1358
AluI	AGCT	2 cut(s)	485, 1358
Alw26I	GTCTC	3 cut(s)	16, 204, 297
AlwI	GGATC	3 cut(s)	579, 907, 1019
ApeKI	GCWGC	1 cut(s)	869
ArsI	GACNNNNNNTTYG	2 cut(s)	848, 880
AseI	ATTAAT	1 cut(s)	941
AspLEI	GCGC	3 cut(s)	351, 353, 355
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	2 cut(s)	914, 1238
BauI	CACGAG	2 cut(s)	207, 817
BbsI	GAAGAC	3 cut(s)	332, 1137, 1379
BbvI	GCAGC	1 cut(s)	856
BccI	CCATC	1 cut(s)	45
BceAI	ACGGC	2 cut(s)	244, 445
BcgI	CGANNNNNNTGC	2 cut(s)	374, 408
BciT130I	CCWGG	3 cut(s)	24, 156, 1029
BciVI	GTATCC	1 cut(s)	231
BclI	TGATCA	1 cut(s)	904
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	3 cut(s)	16, 204, 297
BfaI	CTAG	2 cut(s)	92, 1191
BfmI	CTRYAG	1 cut(s)	273
BfuI	GTATCC	1 cut(s)	231
BisI	GCNGC	1 cut(s)	870
BlpI	GCTNAGC	2 cut(s)	486, 1404
BlsI	GCNGC	1 cut(s)	871
Bme1390I	CCNGG	4 cut(s)	24, 156, 245, 1029
BmgBI	CACGTC	2 cut(s)	1135, 1282
BmiI	GGNNCC	2 cut(s)	6, 319
BmrFI	CCNGG	4 cut(s)	24, 156, 245, 1029
BpiI	GAAGAC	3 cut(s)	332, 1137, 1379
BplI	GAGNNNNNCTC	2 cut(s)	811, 843
BpmI	CTGGAG	1 cut(s)	6
Bpu1102I	GCTNAGC	2 cut(s)	486, 1404
BpuEI	CTTGAG	1 cut(s)	217
BpuMI	CCSGG	1 cut(s)	245
Bsa29I	ATCGAT	1 cut(s)	1068
BsaBI	GATNNNNATC	1 cut(s)	501
BsaI	GGTCTC	2 cut(s)	204, 297
BsaJI	CCNNGG	4 cut(s)	143, 155, 343, 841
BsaWI	WCCGGW	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	1 cut(s)	626
Bse1I	ACTGG	2 cut(s)	376, 976
Bse8I	GATNNNNATC	1 cut(s)	501
BseBI	CCWGG	3 cut(s)	24, 156, 1029
BseCI	ATCGAT	1 cut(s)	1068
BseDI	CCNNGG	4 cut(s)	143, 155, 343, 841
BseGI	GGATG	1 cut(s)	37
BseJI	GATNNNNATC	1 cut(s)	501
BseLI	CCNNNNNNNGG	1 cut(s)	626
BseMII	CTCAG	2 cut(s)	1350, 1418
BseNI	ACTGG	2 cut(s)	376, 976
BsePI	GCGCGC	2 cut(s)	349, 351
BseXI	GCAGC	1 cut(s)	856
Bsh1236I	CGCG	4 cut(s)	351, 353, 521, 622
BshVI	ATCGAT	1 cut(s)	1068
BsiSI	CCGG	2 cut(s)	214, 244
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	1 cut(s)	626
BsmAI	GTCTC	3 cut(s)	16, 204, 297
BsmFI	GGGAC	1 cut(s)	161
Bso31I	GGTCTC	2 cut(s)	204, 297
Bsp1720I	GCTNAGC	2 cut(s)	486, 1404
Bsp19I	CCATGG	2 cut(s)	143, 841
BspACI	CCGC	3 cut(s)	258, 286, 620
BspCNI	CTCAG	2 cut(s)	1351, 1417
BspDI	ATCGAT	1 cut(s)	1068
BspFNI	CGCG	4 cut(s)	351, 353, 521, 622
BspLI	GGNNCC	2 cut(s)	6, 319
BspPI	GGATC	3 cut(s)	579, 907, 1019
BspTNI	GGTCTC	2 cut(s)	204, 297
BsrI	ACTGG	2 cut(s)	376, 976
BssECI	CCNNGG	4 cut(s)	143, 155, 343, 841
BssHII	GCGCGC	2 cut(s)	349, 351
BssSI	CACGAG	2 cut(s)	207, 817
BssT1I	CCWWGG	2 cut(s)	143, 841
Bst2BI	CACGAG	2 cut(s)	207, 817
Bst2UI	CCWGG	3 cut(s)	24, 156, 1029
Bst4CI	ACNGT	6 cut(s)	89, 344, 686, 702, 774, 956
Bst6I	CTCTTC	2 cut(s)	1302, 1323
BstC8I	GCNNGC	3 cut(s)	351, 353, 434
BstDEI	CTNAG	3 cut(s)	486, 1359, 1404
BstDSI	CCRYGG	3 cut(s)	143, 343, 841
BstF5I	GGATG	1 cut(s)	37
BstFNI	CGCG	4 cut(s)	351, 353, 521, 622
BstHHI	GCGC	3 cut(s)	351, 353, 355
BstMAI	GTCTC	3 cut(s)	16, 204, 297
BstNI	CCWGG	3 cut(s)	24, 156, 1029
BstNSI	RCATGY	1 cut(s)	436
BstSCI	CCNGG	4 cut(s)	22, 154, 243, 1027
BstSFI	CTRYAG	1 cut(s)	273
BstUI	CGCG	4 cut(s)	351, 353, 521, 622
BstV1I	GCAGC	1 cut(s)	856
BstV2I	GAAGAC	3 cut(s)	332, 1137, 1379
BstX2I	RGATCY	2 cut(s)	571, 1024
BstYI	RGATCY	2 cut(s)	571, 1024
Bsu15I	ATCGAT	1 cut(s)	1068
BsuI	GTATCC	1 cut(s)	231
BsuTUI	ATCGAT	1 cut(s)	1068
BtgI	CCRYGG	3 cut(s)	143, 343, 841
BtgZI	GCGATG	1 cut(s)	536
BtrI	CACGTC	2 cut(s)	1135, 1282
BtsCI	GGATG	1 cut(s)	37
Cac8I	GCNNGC	3 cut(s)	351, 353, 434
CfoI	GCGC	3 cut(s)	351, 353, 355
ClaI	ATCGAT	1 cut(s)	1068
CseI	GACGC	1 cut(s)	449
Csp6I	GTAC	2 cut(s)	193, 1256
CviAII	CATG	6 cut(s)	144, 359, 382, 433, 842, 1037
CviQI	GTAC	2 cut(s)	193, 1256
DdeI	CTNAG	3 cut(s)	486, 1359, 1404
DraIII	CACNNNGTG	1 cut(s)	1303
Eam1104I	CTCTTC	2 cut(s)	1302, 1323
EarI	CTCTTC	2 cut(s)	1302, 1323
Eco130I	CCWWGG	2 cut(s)	143, 841
Eco31I	GGTCTC	2 cut(s)	204, 297
Eco32I	GATATC	1 cut(s)	1066
Eco57I	CTGAAG	2 cut(s)	138, 184
EcoRII	CCWGG	3 cut(s)	22, 154, 1027
EcoRV	GATATC	1 cut(s)	1066
EcoT14I	CCWWGG	2 cut(s)	143, 841
ErhI	CCWWGG	2 cut(s)	143, 841
FaeI	CATG	6 cut(s)	147, 362, 385, 436, 845, 1040
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	6 cut(s)	143, 358, 381, 432, 841, 1036
FauNDI	CATATG	3 cut(s)	445, 511, 960
FbaI	TGATCA	1 cut(s)	904
Fnu4HI	GCNGC	1 cut(s)	870
FokI	GGATG	1 cut(s)	24
Fsp4HI	GCNGC	1 cut(s)	870
FspBI	CTAG	2 cut(s)	92, 1191
GlaI	GCGC	3 cut(s)	350, 352, 354
GluI	GCNGC	1 cut(s)	870
GsuI	CTGGAG	1 cut(s)	6
HapII	CCGG	2 cut(s)	214, 244
HgaI	GACGC	1 cut(s)	449
HhaI	GCGC	3 cut(s)	351, 353, 355
Hin1II	CATG	6 cut(s)	147, 362, 385, 436, 845, 1040
Hin6I	GCGC	3 cut(s)	349, 351, 353
HinP1I	GCGC	3 cut(s)	349, 351, 353
HincII	GTYRAC	1 cut(s)	724
HindII	GTYRAC	1 cut(s)	724
HinfI	GANTC	8 cut(s)	33, 803, 826, 1111, 1157, 1167, 1237, 1340
HpaI	GTTAAC	1 cut(s)	724
HpaII	CCGG	2 cut(s)	214, 244
HphI	GGTGA	2 cut(s)	914, 1238
Hpy166II	GTNNAC	4 cut(s)	337, 517, 724, 1279
Hpy188I	TCNGA	6 cut(s)	32, 174, 571, 808, 998, 1439
Hpy188III	TCNNGA	6 cut(s)	92, 575, 817, 1164, 1216, 1369
Hpy8I	GTNNAC	4 cut(s)	337, 517, 724, 1279
HpyAV	CCTTC	2 cut(s)	262, 429
HpyCH4III	ACNGT	6 cut(s)	89, 344, 686, 702, 774, 956
HpyCH4IV	ACGT	5 cut(s)	918, 1107, 1134, 1268, 1281
HpyCH4V	TGCA	5 cut(s)	385, 425, 436, 449, 872
HpyF3I	CTNAG	3 cut(s)	486, 1359, 1404
HpySE526I	ACGT	5 cut(s)	918, 1107, 1134, 1268, 1281
Hsp92II	CATG	6 cut(s)	147, 362, 385, 436, 845, 1040
HspAI	GCGC	3 cut(s)	349, 351, 353
Ksp22I	TGATCA	1 cut(s)	904
KspAI	GTTAAC	1 cut(s)	724
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	1 cut(s)	856
MaeI	CTAG	2 cut(s)	92, 1191
MaeII	ACGT	5 cut(s)	918, 1107, 1134, 1268, 1281
MaeIII	GTNAC	8 cut(s)	15, 672, 747, 875, 1040, 1262, 1295, 1347
MflI	RGATCY	2 cut(s)	571, 1024
MluCI	AATT	4 cut(s)	57, 541, 925, 938
MlyI	GAGTC	1 cut(s)	820
MmeI	TCCRAC	5 cut(s)	65, 278, 640, 672, 906
MnlI	CCTC	6 cut(s)	30, 43, 658, 1093, 1165, 1324
MseI	TTAA	5 cut(s)	642, 723, 941, 1197, 1397
MslI	CAYNNNNRTG	1 cut(s)	821
MspI	CCGG	2 cut(s)	214, 244
MspR9I	CCNGG	4 cut(s)	24, 156, 245, 1029
MvaI	CCWGG	3 cut(s)	24, 156, 1029
MvnI	CGCG	4 cut(s)	351, 353, 521, 622
NciI	CCSGG	1 cut(s)	245
NcoI	CCATGG	2 cut(s)	143, 841
NdeI	CATATG	3 cut(s)	445, 511, 960
NlaIII	CATG	6 cut(s)	147, 362, 385, 436, 845, 1040
NlaIV	GGNNCC	2 cut(s)	6, 319
NmeAIII	GCCGAG	1 cut(s)	314
NmuCI	GTSAC	3 cut(s)	672, 1262, 1295
NspI	RCATGY	1 cut(s)	436
PaeI	GCATGC	1 cut(s)	436
PauI	GCGCGC	2 cut(s)	349, 351
PcsI	WCGNNNNNNNCGW	2 cut(s)	843, 1104
PfeI	GAWTC	7 cut(s)	33, 803, 1111, 1157, 1167, 1237, 1340
PfoI	TCCNGGA	1 cut(s)	1027
PkrI	GCNGC	1 cut(s)	871
PleI	GAGTC	1 cut(s)	820
PpsI	GAGTC	1 cut(s)	820
PshBI	ATTAAT	1 cut(s)	941
Psp6I	CCWGG	3 cut(s)	22, 154, 1027
PspGI	CCWGG	3 cut(s)	22, 154, 1027
PspN4I	GGNNCC	2 cut(s)	6, 319
PsuI	RGATCY	2 cut(s)	571, 1024
PteI	GCGCGC	2 cut(s)	349, 351
RsaI	GTAC	2 cut(s)	194, 1257
RsaNI	GTAC	2 cut(s)	193, 1256
RseI	CAYNNNNRTG	1 cut(s)	821
SaqAI	TTAA	5 cut(s)	642, 723, 941, 1197, 1397
SatI	GCNGC	1 cut(s)	870
SchI	GAGTC	1 cut(s)	820
ScrFI	CCNGG	4 cut(s)	24, 156, 245, 1029
SfcI	CTRYAG	1 cut(s)	273
SmiMI	CAYNNNNRTG	1 cut(s)	821
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
SphI	GCATGC	1 cut(s)	436
Sse9I	AATT	4 cut(s)	57, 541, 925, 938
SsiI	CCGC	3 cut(s)	258, 286, 620
SspMI	CTAG	2 cut(s)	92, 1191
StyD4I	CCNGG	4 cut(s)	22, 154, 243, 1027
StyI	CCWWGG	2 cut(s)	143, 841
TaaI	ACNGT	6 cut(s)	89, 344, 686, 702, 774, 956
TaiI	ACGT	5 cut(s)	921, 1110, 1137, 1271, 1284
TaqII	GACCGA	2 cut(s)	321, 495
TasI	AATT	4 cut(s)	57, 541, 925, 938
TfiI	GAWTC	7 cut(s)	33, 803, 1111, 1157, 1167, 1237, 1340
Tru1I	TTAA	5 cut(s)	642, 723, 941, 1197, 1397
Tru9I	TTAA	5 cut(s)	642, 723, 941, 1197, 1397
TseFI	GTSAC	3 cut(s)	672, 1262, 1295
TseI	GCWGC	1 cut(s)	869
Tsp45I	GTSAC	3 cut(s)	672, 1262, 1295
TspDTI	ATGAA	8 cut(s)	417, 948, 977, 1025, 1143, 1149, 1161, 1312
VspI	ATTAAT	1 cut(s)	941
XbaI	TCTAGA	1 cut(s)	91
XceI	RCATGY	1 cut(s)	436
XcmI	CCANNNNNNNNNTGG	2 cut(s)	328, 623
XspI	CTAG	2 cut(s)	92, 1191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.