AT5G17260
NAC Family

NAC domain containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
5675184 .. 5678175
2992 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G17260.1

Sequence Viewer

Length: 1431 bp
ATGGCTCCGGTCTCGTTGCCTCCAGGTTTTAGGTTCCATCCAACGGACGAAGAACTAATCACTTACTATCTCAAGAGAAAGATCAACGGCCAAGAGATCGAGCTAGAGATTATCCCTGAAGTAGACCTCTACAAGTGCGAACCATGGGACTTGCCAGGGAAGTCACTGATTCCTAGCAAAGACCAAGAATGGTTCTTCTTCAGCCCACGGGACAGAAAGTACCCCAATGGTTCAAGGACAAACCGGGCAACAAAAGGCGGTTATTGGAAAGCCACAGGCAAAGACCGGCGGGTGAGTTGGAGAGATCGAGCCATTGGGACCAAGAAAACATTAGTTTACTACCGTGGACGTGCCCCGCATGGTATTAGAACTGGTTGGGTCATGCATGAATATCGCCTCGATGAATCCGAATGCGAGCCTTCTGCATTTGGCATGCAGGACGCATATGCACTCTGTCGCGTGTTTAAGAAAATAGTGATTGAGGCGAAACCAAGGGATCAACATCAGCAGCAGCATCAACCTTACGTCCACACGAGCTCGAATATAAGTGGTAGCTCGAGTTTTGACGTTTGTTCAGATCTTGAAATAAGTTCAAACACACCTTATAATACCGCTGCCCATATCCAACCGCGATTTGGAAACGCAAACGCAATTAGTGATCATGATGACTGGTCGCAGTACTTGTCACAAAACATGCCTACAAGCTTTTCAGATTACGGATCTCCTTATGGACCATACCTCACTCAATCAAAGGTGAATACAGAAGTGCAATGTGAGATGTTTCAACACCAAATGTCATTGCCACCATTGCGAGTAGAAAACTCGCAGGCTCAAACCAGCGATTTCTCCAAGAGACTACATCAAAACAGTGGTCAAAGTGGGTTCGACGACTTTACTTTCGCTGCAAGTAACTCCAACCAATTCTACAACAGCAACGTTGATGATCATTTGATACACATTGGAAATCTTGACGAGCAGAGTTATATAGAAGAACAAGAATTGATTTTGCCAAGTTTCCAGAGTAATGATCAAGATCTTGAACTTTATGGCGGATCTCGGACCAATACAATAGACAACATAGAGATCGACGATTTTTTCTCGTTTGAGAACCAAGCACAAGACAACGACAACTCAAACGTAACCCCAAACTCGGCAGGATTCGAAATGATTGGAGAAGAGATTATAGTAAACCATAAAATGCTCATTAGTACACGGCAGACTACGGAGATTTTATACTATCAAGTGGTACCGTCGCAGATATTGAAAATTCACATAAATCCGGTTCATGGAAATGAAGAGAGAACAATGTTAATGGAAGAAGACAGTGATGATTCTTGGTTCCAGAAGGCTGAAAATGTTGCGAAGATGAAACTGAAACAGATTAGTTTAGTTGCAAAACGTTATTACAAATGTCTTACTATTATTTTCTGA

Protein Analysis

476

Amino Acids

54.83

Weight (kDa)

5.31

Isoelectric Point (pI)

52.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 7 - 133 2.2e-50 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0027096)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03200 AT5G17260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 606
Acc65I GGTACC 1 cut(s) 1246
AccB1I GGYRCC 1 cut(s) 1246
AccI GTMKAC 1 cut(s) 123
AccII CGCG 2 cut(s) 459, 631
AciI CCGC 6 cut(s) 258, 289, 356, 612, 629, 1050
AclI AACGTT 2 cut(s) 936, 1399
AclWI GGATC 3 cut(s) 504, 727, 1060
AcoI YGGCCR 1 cut(s) 88
AcsI RAATTY 1 cut(s) 1266
AcuI CTGAAG 2 cut(s) 138, 184
AfaI GTAC 4 cut(s) 221, 680, 1210, 1248
AfiI CCNNNNNNNGG 4 cut(s) 43, 635, 1150, 1286
AgsI TTSAA 6 cut(s) 234, 584, 594, 785, 1040, 1264
AjiI CACGTC 1 cut(s) 350
AjnI CCWGG 2 cut(s) 22, 154
AluBI AGCT 4 cut(s) 103, 537, 555, 705
AluI AGCT 4 cut(s) 103, 537, 555, 705
Alw21I GWGCWC 1 cut(s) 539
Alw26I GTCTC 2 cut(s) 16, 847
AlwI GGATC 3 cut(s) 504, 727, 1060
Ama87I CYCGRG 1 cut(s) 556
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 4 cut(s) 508, 511, 614, 902
ApoI RAATTY 1 cut(s) 1266
ArsI GACNNNNNNTTYG 4 cut(s) 856, 881, 888, 913
Asp718I GGTACC 1 cut(s) 1246
AspS9I GGNCC 3 cut(s) 318, 731, 1059
AsuC2I CCSGG 1 cut(s) 245
AsuHPI GGTGA 2 cut(s) 304, 766
AsuII TTCGAA 1 cut(s) 1161
AvaI CYCGRG 1 cut(s) 556
AvaII GGWCC 3 cut(s) 318, 731, 1059
BaeGI GKGCMC 1 cut(s) 355
BanI GGYRCC 1 cut(s) 1246
BanII GRGCYC 1 cut(s) 539
BauI CACGAG 1 cut(s) 532
BbsI GAAGAC 1 cut(s) 1326
Bbv12I GWGCWC 1 cut(s) 539
BbvI GCAGC 4 cut(s) 520, 523, 601, 889
BccI CCATC 1 cut(s) 45
BceAI ACGGC 2 cut(s) 103, 1229
BcgI CGANNNNNNTGC 4 cut(s) 374, 404, 408, 438
BciT130I CCWGG 2 cut(s) 24, 156
BclI TGATCA 3 cut(s) 658, 943, 1027
BcnI CCSGG 1 cut(s) 245
BcoDI GTCTC 2 cut(s) 16, 847
BfaI CTAG 2 cut(s) 104, 174
BglII AGATCT 2 cut(s) 577, 1033
BisI GCNGC 4 cut(s) 509, 512, 615, 903
BlsI GCNGC 4 cut(s) 510, 513, 616, 904
BmcAI AGTACT 1 cut(s) 680
Bme1390I CCNGG 3 cut(s) 24, 156, 245
Bme18I GGWCC 3 cut(s) 318, 731, 1059
BmeT110I CYCGRG 1 cut(s) 556
BmgBI CACGTC 1 cut(s) 350
BmgT120I GGNCC 3 cut(s) 318, 731, 1059
BmiI GGNNCC 5 cut(s) 6, 35, 319, 1248, 1340
BmrFI CCNGG 3 cut(s) 24, 156, 245
BmsI GCATC 1 cut(s) 523
BpiI GAAGAC 1 cut(s) 1326
BpmI CTGGAG 1 cut(s) 6
Bpu14I TTCGAA 1 cut(s) 1161
BpuEI CTTGAG 1 cut(s) 56
BpuMI CCSGG 1 cut(s) 245
BsaBI GATNNNNATC 2 cut(s) 501, 1032
BsaI GGTCTC 1 cut(s) 16
BsaJI CCNNGG 5 cut(s) 143, 155, 206, 343, 491
BsaWI WCCGGW 2 cut(s) 7, 1279
Bsc4I CCNNNNNNNGG 4 cut(s) 43, 635, 1150, 1286
Bse118I RCCGGY 1 cut(s) 285
Bse1I ACTGG 2 cut(s) 376, 674
Bse3DI GCAATG 3 cut(s) 776, 797, 806
Bse8I GATNNNNATC 2 cut(s) 501, 1032
BseBI CCWGG 2 cut(s) 24, 156
BseDI CCNNGG 5 cut(s) 143, 155, 206, 343, 491
BseGI GGATG 1 cut(s) 37
BseJI GATNNNNATC 2 cut(s) 501, 1032
BseLI CCNNNNNNNGG 4 cut(s) 43, 635, 1150, 1286
BseMI GCAATG 3 cut(s) 776, 797, 806
BseNI ACTGG 2 cut(s) 376, 674
BseSI GKGCMC 1 cut(s) 355
BseXI GCAGC 4 cut(s) 520, 523, 601, 889
Bsh1236I CGCG 2 cut(s) 459, 631
BshFI GGCC 1 cut(s) 90
BshNI GGYRCC 1 cut(s) 1246
BsiHKAI GWGCWC 1 cut(s) 539
BsiHKCI CYCGRG 1 cut(s) 556
BsiSI CCGG 4 cut(s) 8, 244, 286, 1280
BslFI GGGAC 3 cut(s) 161, 224, 331
BslI CCNNNNNNNGG 4 cut(s) 43, 635, 1150, 1286
BsmAI GTCTC 2 cut(s) 16, 847
BsmFI GGGAC 3 cut(s) 161, 224, 331
BsmI GAATGC 1 cut(s) 416
BsnI GGCC 1 cut(s) 90
Bso31I GGTCTC 1 cut(s) 16
BsoBI CYCGRG 1 cut(s) 556
Bsp119I TTCGAA 1 cut(s) 1161
Bsp1286I GDGCHC 2 cut(s) 355, 539
Bsp19I CCATGG 1 cut(s) 143
BspACI CCGC 6 cut(s) 258, 289, 356, 612, 629, 1050
BspANI GGCC 1 cut(s) 90
BspFNI CGCG 2 cut(s) 459, 631
BspHI TCATGA 1 cut(s) 661
BspLI GGNNCC 5 cut(s) 6, 35, 319, 1248, 1340
BspPI GGATC 3 cut(s) 504, 727, 1060
BspT104I TTCGAA 1 cut(s) 1161
BspT107I GGYRCC 1 cut(s) 1246
BspTNI GGTCTC 1 cut(s) 16
BsrDI GCAATG 3 cut(s) 776, 797, 806
BsrFI RCCGGY 1 cut(s) 285
BsrI ACTGG 2 cut(s) 376, 674
BssAI RCCGGY 1 cut(s) 285
BssECI CCNNGG 5 cut(s) 143, 155, 206, 343, 491
BssSI CACGAG 1 cut(s) 532
BssT1I CCWWGG 2 cut(s) 143, 491
Bst2BI CACGAG 1 cut(s) 532
Bst2UI CCWGG 2 cut(s) 24, 156
Bst4CI ACNGT 4 cut(s) 344, 869, 1251, 1325
Bst6I CTCTTC 2 cut(s) 1170, 1290
BstBI TTCGAA 1 cut(s) 1161
BstC8I GCNNGC 3 cut(s) 416, 434, 828
BstDSI CCRYGG 3 cut(s) 143, 206, 343
BstF5I GGATG 1 cut(s) 37
BstFNI CGCG 2 cut(s) 459, 631
BstMAI GTCTC 2 cut(s) 16, 847
BstMWI GCNNNNNNNGC 1 cut(s) 808
BstNI CCWGG 2 cut(s) 24, 156
BstNSI RCATGY 2 cut(s) 436, 697
BstSCI CCNGG 3 cut(s) 22, 154, 243
BstSLI GKGCMC 1 cut(s) 355
BstUI CGCG 2 cut(s) 459, 631
BstV1I GCAGC 4 cut(s) 520, 523, 601, 889
BstV2I GAAGAC 1 cut(s) 1326
BstX2I RGATCY 4 cut(s) 577, 719, 1033, 1052
BstYI RGATCY 4 cut(s) 577, 719, 1033, 1052
BsuRI GGCC 1 cut(s) 90
BtgI CCRYGG 3 cut(s) 143, 206, 343
BtrI CACGTC 1 cut(s) 350
BtsCI GGATG 1 cut(s) 37
BtsIMutI CAGTG 3 cut(s) 164, 874, 1330
Cac8I GCNNGC 3 cut(s) 416, 434, 828
CciI TCATGA 1 cut(s) 661
Cfr10I RCCGGY 1 cut(s) 285
Cfr13I GGNCC 3 cut(s) 318, 731, 1059
CseI GACGC 1 cut(s) 449
Csp6I GTAC 4 cut(s) 220, 679, 1209, 1247
CviAII CATG 8 cut(s) 144, 359, 382, 386, 433, 662, 694, 1286
CviQI GTAC 4 cut(s) 220, 679, 1209, 1247
EaeI YGGCCR 1 cut(s) 88
Eam1104I CTCTTC 2 cut(s) 1170, 1290
EarI CTCTTC 2 cut(s) 1170, 1290
EciI GGCGGA 1 cut(s) 1065
Ecl136II GAGCTC 1 cut(s) 537
Eco130I CCWWGG 2 cut(s) 143, 491
Eco24I GRGCYC 1 cut(s) 539
Eco31I GGTCTC 1 cut(s) 16
Eco47I GGWCC 3 cut(s) 318, 731, 1059
Eco53kI GAGCTC 1 cut(s) 537
Eco57I CTGAAG 2 cut(s) 138, 184
Eco88I CYCGRG 1 cut(s) 556
EcoICRI GAGCTC 1 cut(s) 537
EcoRII CCWGG 2 cut(s) 22, 154
EcoT14I CCWWGG 2 cut(s) 143, 491
EcoT22I ATGCAT 1 cut(s) 387
EcoT38I GRGCYC 1 cut(s) 539
ErhI CCWWGG 2 cut(s) 143, 491
FaeI CATG 8 cut(s) 147, 362, 385, 389, 436, 665, 697, 1289
FaqI GGGAC 3 cut(s) 161, 224, 331
FatI CATG 8 cut(s) 143, 358, 381, 385, 432, 661, 693, 1285
FauI CCCGC 2 cut(s) 282, 363
FauNDI CATATG 1 cut(s) 445
FbaI TGATCA 3 cut(s) 658, 943, 1027
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 4 cut(s) 509, 512, 615, 903
FokI GGATG 1 cut(s) 24
FriOI GRGCYC 1 cut(s) 539
Fsp4HI GCNGC 4 cut(s) 509, 512, 615, 903
FspBI CTAG 2 cut(s) 104, 174
GluI GCNGC 4 cut(s) 509, 512, 615, 903
GsuI CTGGAG 1 cut(s) 6
HaeIII GGCC 1 cut(s) 90
HapII CCGG 4 cut(s) 8, 244, 286, 1280
HgaI GACGC 1 cut(s) 449
Hin1II CATG 8 cut(s) 147, 362, 385, 389, 436, 665, 697, 1289
HindIII AAGCTT 1 cut(s) 703
HinfI GANTC 4 cut(s) 169, 404, 1158, 1331
HpaII CCGG 4 cut(s) 8, 244, 286, 1280
HphI GGTGA 2 cut(s) 304, 766
Hpy166II GTNNAC 6 cut(s) 124, 337, 347, 529, 1189, 1211
Hpy188I TCNGA 5 cut(s) 409, 577, 712, 1059, 1430
Hpy188III TCNNGA 8 cut(s) 73, 581, 662, 968, 1018, 1031, 1037, 1342
Hpy8I GTNNAC 6 cut(s) 124, 337, 347, 529, 1189, 1211
Hpy99I CGWCG 3 cut(s) 890, 1091, 1255
HpyAV CCTTC 2 cut(s) 429, 1339
HpyCH4III ACNGT 4 cut(s) 344, 869, 1251, 1325
HpyCH4IV ACGT 6 cut(s) 349, 525, 567, 936, 1137, 1399
HpyCH4V TGCA 7 cut(s) 385, 425, 436, 449, 769, 905, 1394
HpyF10VI GCNNNNNNNGC 1 cut(s) 808
HpySE526I ACGT 6 cut(s) 349, 525, 567, 936, 1137, 1399
Hsp92II CATG 8 cut(s) 147, 362, 385, 389, 436, 665, 697, 1289
KpnI GGTACC 1 cut(s) 1250
Ksp22I TGATCA 3 cut(s) 658, 943, 1027
LmnI GCTCC 1 cut(s) 10
Lsp1109I GCAGC 4 cut(s) 520, 523, 601, 889
LweI GCATC 1 cut(s) 523
MaeI CTAG 2 cut(s) 104, 174
MaeII ACGT 6 cut(s) 349, 525, 567, 936, 1137, 1399
MaeIII GTNAC 4 cut(s) 162, 684, 908, 1138
MboII GAAGA 9 cut(s) 62, 187, 190, 1001, 1187, 1307, 1328, 1331, 1375
MflI RGATCY 4 cut(s) 577, 719, 1033, 1052
MhlI GDGCHC 2 cut(s) 355, 539
MluCI AATT 4 cut(s) 651, 920, 998, 1266
MmeI TCCRAC 4 cut(s) 65, 278, 649, 939
MnlI CCTC 5 cut(s) 30, 137, 407, 475, 749
Mph1103I ATGCAT 1 cut(s) 387
MseI TTAA 2 cut(s) 465, 1310
MslI CAYNNNNRTG 1 cut(s) 1290
MspA1I CMGCKG 1 cut(s) 614
MspI CCGG 4 cut(s) 8, 244, 286, 1280
MspR9I CCNGG 3 cut(s) 24, 156, 245
Mva1269I GAATGC 1 cut(s) 416
MvaI CCWGG 2 cut(s) 24, 156
MvnI CGCG 2 cut(s) 459, 631
MwoI GCNNNNNNNGC 1 cut(s) 808
NciI CCSGG 1 cut(s) 245
NcoI CCATGG 1 cut(s) 143
NdeI CATATG 1 cut(s) 445
NlaIII CATG 8 cut(s) 147, 362, 385, 389, 436, 665, 697, 1289
NlaIV GGNNCC 5 cut(s) 6, 35, 319, 1248, 1340
NmeAIII GCCGAG 1 cut(s) 1130
NmuCI GTSAC 2 cut(s) 162, 684
NsiI ATGCAT 1 cut(s) 387
NspI RCATGY 2 cut(s) 436, 697
NspV TTCGAA 1 cut(s) 1161
PaeI GCATGC 1 cut(s) 436
PaeR7I CTCGAG 1 cut(s) 556
PagI TCATGA 1 cut(s) 661
PcsI WCGNNNNNNNCGW 1 cut(s) 405
PctI GAATGC 1 cut(s) 416
PfeI GAWTC 4 cut(s) 169, 404, 1158, 1331
PkrI GCNGC 4 cut(s) 510, 513, 616, 904
PsiI TTATAA 1 cut(s) 606
Psp124BI GAGCTC 1 cut(s) 539
Psp1406I AACGTT 2 cut(s) 936, 1399
Psp6I CCWGG 2 cut(s) 22, 154
PspGI CCWGG 2 cut(s) 22, 154
PspN4I GGNNCC 5 cut(s) 6, 35, 319, 1248, 1340
PspPI GGNCC 3 cut(s) 318, 731, 1059
PspXI VCTCGAGB 1 cut(s) 556
PsuI RGATCY 4 cut(s) 577, 719, 1033, 1052
RsaI GTAC 4 cut(s) 221, 680, 1210, 1248
RsaNI GTAC 4 cut(s) 220, 679, 1209, 1247
RseI CAYNNNNRTG 1 cut(s) 1290
SacI GAGCTC 1 cut(s) 539
SaqAI TTAA 2 cut(s) 465, 1310
SatI GCNGC 4 cut(s) 509, 512, 615, 903
Sau96I GGNCC 3 cut(s) 318, 731, 1059
ScaI AGTACT 1 cut(s) 680
ScrFI CCNGG 3 cut(s) 24, 156, 245
SduI GDGCHC 2 cut(s) 355, 539
SfaNI GCATC 1 cut(s) 523
Sfr274I CTCGAG 1 cut(s) 556
SfuI TTCGAA 1 cut(s) 1161
SinI GGWCC 3 cut(s) 318, 731, 1059
SlaI CTCGAG 1 cut(s) 556
SmiMI CAYNNNNRTG 1 cut(s) 1290
SmlI CTYRAG 2 cut(s) 71, 556
SmoI CTYRAG 2 cut(s) 71, 556
SphI GCATGC 1 cut(s) 436
Sse9I AATT 4 cut(s) 651, 920, 998, 1266
SsiI CCGC 6 cut(s) 258, 289, 356, 612, 629, 1050
SspMI CTAG 2 cut(s) 104, 174
SstI GAGCTC 1 cut(s) 539
StyD4I CCNGG 3 cut(s) 22, 154, 243
StyI CCWWGG 2 cut(s) 143, 491
TaaI ACNGT 4 cut(s) 344, 869, 1251, 1325
TaiI ACGT 6 cut(s) 352, 528, 570, 939, 1140, 1402
TaqI TCGA 8 cut(s) 99, 307, 399, 539, 557, 885, 1086, 1161
TasI AATT 4 cut(s) 651, 920, 998, 1266
TatI WGTACW 2 cut(s) 678, 1208
TfiI GAWTC 4 cut(s) 169, 404, 1158, 1331
Tru1I TTAA 2 cut(s) 465, 1310
Tru9I TTAA 2 cut(s) 465, 1310
TscAI CASTG 3 cut(s) 171, 874, 1330
TseFI GTSAC 2 cut(s) 162, 684
TseI GCWGC 4 cut(s) 508, 511, 614, 902
Tsp45I GTSAC 2 cut(s) 162, 684
TspDTI ATGAA 5 cut(s) 402, 417, 1274, 1308, 1382
TspGWI ACGGA 3 cut(s) 59, 732, 1238
TspRI CASTG 3 cut(s) 171, 874, 1330
VpaK11BI GGWCC 3 cut(s) 318, 731, 1059
XapI RAATTY 1 cut(s) 1266
XceI RCATGY 2 cut(s) 436, 697
XcmI CCANNNNNNNNNTGG 1 cut(s) 632
XhoI CTCGAG 1 cut(s) 556
XmiI GTMKAC 1 cut(s) 123
XspI CTAG 2 cut(s) 104, 174
ZrmI AGTACT 1 cut(s) 680
Zsp2I ATGCAT 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.