AT3G09240

serine threonine-protein kinase At5g41260

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
2835381 .. 2838202
2822 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G09240.1

Sequence Viewer

Length: 1434 bp
ATGATCGAGAGAACTAACCTAATAGTTTTGGCTGCAGATAATAAAGAAGAAGATGAAGGAAGTACTTGTCCTAATTTCCTGGAGTTCAGCTTGGAACAGTTGAGAGTCGCAACTGACGGATTCTCCGCCGACAACATCGTGTCGGAGCACAACGAGAGGGTTCCTAACATCGTCTACAAAGGCCAGCTCAACGACGGAAGAAAGATCGCCGTCAAGCGGTTTCAACGGCTTTCATGGCCTGATTCTTTAGAATTCATCGAGGAAGCACAAGCTGTAGGGAGATGTAGGAGTGAGCATATGGCCAATTTGATCGGTTGTTGCTCAGAAGGTCACGAGAGGTTGCTTGTTGCTGAGTACATGCCTAATGAAACACTTGCTAAGCATCTCTTTCACTGGGAGAAAAGACCAATGAAGTGGGAAATGAGGTTGAGAGTTGCGTTACATACTGCAACAGCCTTGGAGTACTGTAATGATTGGGGAATAGATTTGTATCACGATCTTAACACCTACAGAATATTGTTTGACAAGGTTGGGAATCCTAGGCTGTCTTGTTTTGGTCTCATGAAGTGTAGCCGAGAGGGAAAGAGCTATAGTACCAACTTGGCATTTGCTCCTCCTGAATATTTACGTCTAGGTACTGTGATACCGGAGAGTGTCACATTTAGCTTCGGAACCTTGTTACTGGATCTTATGAGCGGCAGACATATTCCACCAAACCATGCACTTGATCTGTTCCGTGGTAAAAACTATTTGGTGCTAATGGATTCAGCTCTGGATGGTCAATTCTCTGATGAGGATAGAACAGAACTTATCCATCTAGCTTCCCGCTGTTTGCGCCCTGAACCAGACGAGAGGCCAAGCATAAAGTTTCTTATGTCAGCTCTTTCAAGACTTGAGAAAAGAGCTGAGTTATGGCCCAACGTCAAAGAAGAAAACATCCCTACTCCATCATACACTGAACCTGCAACAAAGGAGCCATTGCCCTTGACCCCTTTCGGAGAAGCATGCTGGAGAGTGGATCTAAGTGGTATGCACGAACTACTCGAGAAACTCGGGTATGGAGAGGATGATGTGGTGGTCACAAATGAGTTCTCATTCCAAATGTGGACGGGTCAAATGCAAGAGAATATGGATTACAAGAAGCACGGAGATGCCGCATTTCGTGCTAAAGATTTTGAAACCGCAATCGAATTCTACACAGAGTTCATGAGTGGAGCACCAGTGGTATCACCAACAGTATTAGCCAGACGGTGTCTATGTTACCTAATGAGTGATATGTTCCGCGAGGCTCTAAGTGATGCGATGCAAACTCAGGTCGCATCGCCAGAGTTTTCGATCGCTCTCTACTTACAAGCAGCTTGTCTTTTAAAGCTTGGGATGGAGGCTGAAGCTAAAGAAGCTCTTAGACATGGCTCTTCTCTCGAAGCTTTTTAG

Protein Analysis

477

Amino Acids

54.33

Weight (kDa)

5.15

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 58 - 294 1.6e-21 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 58 - 292 2.2e-20 Protein kinase domain
TPR_BSK1_C PF25575 334 - 452 1.3e-50 Serine/threonine-protein kinase BSK1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020241)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09240 AT3G09240 AT3G09240 AT5G01060 AT5G01060 AT5G01060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 970
AccBSI CCGCTC 1 cut(s) 696
AccI GTMKAC 1 cut(s) 174
AccII CGCG 1 cut(s) 1284
AciI CCGC 7 cut(s) 126, 217, 696, 826, 1155, 1182, 1282
AclWI GGATC 2 cut(s) 693, 1026
AcoI YGGCCR 1 cut(s) 300
AcsI RAATTY 2 cut(s) 251, 1190
AcuI CTGAAG 1 cut(s) 1407
AfaI GTAC 5 cut(s) 64, 356, 464, 595, 637
AfiI CCNNNNNNNGG 1 cut(s) 216
AgsI TTSAA 3 cut(s) 224, 888, 1178
AjnI CCWGG 1 cut(s) 78
Alw21I GWGCWC 2 cut(s) 150, 1219
Alw26I GTCTC 1 cut(s) 563
AlwI GGATC 2 cut(s) 693, 1026
Ama87I CYCGRG 2 cut(s) 1043, 1052
AoxI GGCC 5 cut(s) 181, 236, 300, 854, 914
ApeKI GCWGC 2 cut(s) 32, 1355
ApoI RAATTY 2 cut(s) 251, 1190
AspA2I CCTAGG 1 cut(s) 539
AspLEI GCGC 1 cut(s) 837
AspS9I GGNCC 1 cut(s) 915
AsuHPI GGTGA 1 cut(s) 1221
AvaI CYCGRG 2 cut(s) 1043, 1052
AvrII CCTAGG 1 cut(s) 539
BalI TGGCCA 1 cut(s) 302
BauI CACGAG 1 cut(s) 332
Bbv12I GWGCWC 2 cut(s) 150, 1219
BbvI GCAGC 2 cut(s) 19, 1367
BccI CCATC 4 cut(s) 770, 822, 955, 1372
BceAI ACGGC 2 cut(s) 194, 242
BciT130I CCWGG 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 563
BfaI CTAG 3 cut(s) 540, 632, 818
BfmI CTRYAG 4 cut(s) 33, 273, 508, 589
BfuAI ACCTGC 1 cut(s) 970
BisI GCNGC 4 cut(s) 33, 697, 1155, 1356
BlnI CCTAGG 1 cut(s) 539
BlpI GCTNAGC 1 cut(s) 378
BlsI GCNGC 4 cut(s) 34, 698, 1156, 1357
BmcAI AGTACT 2 cut(s) 64, 464
Bme1390I CCNGG 1 cut(s) 80
BmeT110I CYCGRG 2 cut(s) 1043, 1052
BmgT120I GGNCC 1 cut(s) 915
BmiI GGNNCC 3 cut(s) 162, 673, 975
BmrFI CCNGG 1 cut(s) 80
BmrI ACTGGG 1 cut(s) 403
BmsI GCATC 5 cut(s) 391, 1141, 1288, 1293, 1328
BmuI ACTGGG 1 cut(s) 403
BpmI CTGGAG 2 cut(s) 101, 1030
Bpu1102I GCTNAGC 1 cut(s) 378
BpuEI CTTGAG 1 cut(s) 914
BsaBI GATNNNNATC 1 cut(s) 489
BsaI GGTCTC 1 cut(s) 563
BsaJI CCNNGG 3 cut(s) 456, 539, 736
BsaWI WCCGGW 1 cut(s) 646
BsaXI ACNNNNNCTCC 4 cut(s) 107, 137, 1206, 1236
Bsc4I CCNNNNNNNGG 1 cut(s) 216
Bse1I ACTGG 3 cut(s) 398, 687, 1220
Bse3DI GCAATG 1 cut(s) 977
Bse8I GATNNNNATC 1 cut(s) 489
BseBI CCWGG 1 cut(s) 80
BseDI CCNNGG 3 cut(s) 456, 539, 736
BseGI GGATG 4 cut(s) 781, 936, 1072, 1383
BseJI GATNNNNATC 1 cut(s) 489
BseLI CCNNNNNNNGG 1 cut(s) 216
BseMI GCAATG 1 cut(s) 977
BseMII CTCAG 4 cut(s) 336, 342, 897, 1325
BseNI ACTGG 3 cut(s) 398, 687, 1220
BseRI GAGGAG 1 cut(s) 603
BseXI GCAGC 2 cut(s) 19, 1367
Bsh1236I CGCG 1 cut(s) 1284
Bsh1285I CGRYCG 1 cut(s) 1338
BshFI GGCC 5 cut(s) 183, 238, 302, 856, 916
BsiEI CGRYCG 1 cut(s) 1338
BsiHKAI GWGCWC 2 cut(s) 150, 1219
BsiHKCI CYCGRG 2 cut(s) 1043, 1052
BsiSI CCGG 1 cut(s) 647
BslI CCNNNNNNNGG 1 cut(s) 216
BsmAI GTCTC 1 cut(s) 563
BsnI GGCC 5 cut(s) 183, 238, 302, 856, 916
Bso31I GGTCTC 1 cut(s) 563
BsoBI CYCGRG 2 cut(s) 1043, 1052
Bsp1286I GDGCHC 2 cut(s) 150, 1219
Bsp143I GATC 8 cut(s) 3, 204, 309, 496, 685, 727, 1018, 1335
Bsp1720I GCTNAGC 1 cut(s) 378
BspACI CCGC 7 cut(s) 126, 217, 696, 826, 1155, 1182, 1282
BspANI GGCC 5 cut(s) 183, 238, 302, 856, 916
BspCNI CTCAG 4 cut(s) 335, 343, 898, 1324
BspFNI CGCG 1 cut(s) 1284
BspHI TCATGA 2 cut(s) 561, 1206
BspLI GGNNCC 3 cut(s) 162, 673, 975
BspMAI CTGCAG 1 cut(s) 37
BspMI ACCTGC 1 cut(s) 970
BspPI GGATC 2 cut(s) 693, 1026
BspQI GCTCTTC 1 cut(s) 1420
BspTNI GGTCTC 1 cut(s) 563
BsrBI CCGCTC 1 cut(s) 696
BsrDI GCAATG 1 cut(s) 977
BsrI ACTGG 3 cut(s) 398, 687, 1220
BssECI CCNNGG 3 cut(s) 456, 539, 736
BssMI GATC 8 cut(s) 3, 204, 309, 496, 685, 727, 1018, 1335
BssSI CACGAG 1 cut(s) 332
BssT1I CCWWGG 2 cut(s) 456, 539
Bst2BI CACGAG 1 cut(s) 332
Bst2UI CCWGG 1 cut(s) 80
Bst4CI ACNGT 5 cut(s) 99, 467, 640, 1237, 1251
Bst6I CTCTTC 1 cut(s) 1420
BstAPI GCANNNNNTGC 1 cut(s) 1163
BstC8I GCNNGC 2 cut(s) 185, 1006
BstDEI CTNAG 8 cut(s) 322, 351, 378, 906, 1022, 1292, 1311, 1403
BstDSI CCRYGG 1 cut(s) 736
BstF5I GGATG 4 cut(s) 781, 936, 1072, 1383
BstFNI CGCG 1 cut(s) 1284
BstHHI GCGC 1 cut(s) 837
BstKTI GATC 8 cut(s) 6, 207, 312, 499, 688, 730, 1021, 1338
BstMAI GTCTC 1 cut(s) 563
BstMBI GATC 8 cut(s) 3, 204, 309, 496, 685, 727, 1018, 1335
BstMCI CGRYCG 1 cut(s) 1338
BstMWI GCNNNNNNNGC 4 cut(s) 235, 834, 1163, 1397
BstNI CCWGG 1 cut(s) 80
BstNSI RCATGY 2 cut(s) 361, 1008
BstSCI CCNGG 1 cut(s) 78
BstSFI CTRYAG 4 cut(s) 33, 273, 508, 589
BstUI CGCG 1 cut(s) 1284
BstV1I GCAGC 2 cut(s) 19, 1367
BstX2I RGATCY 2 cut(s) 685, 1018
BstXI CCANNNNNNTGG 1 cut(s) 414
BstYI RGATCY 2 cut(s) 685, 1018
BsuRI GGCC 5 cut(s) 183, 238, 302, 856, 916
BtgI CCRYGG 1 cut(s) 736
BtgZI GCGATG 2 cut(s) 1305, 1316
BtsCI GGATG 4 cut(s) 781, 936, 1072, 1383
BtsIMutI CAGTG 3 cut(s) 391, 954, 1227
BveI ACCTGC 1 cut(s) 970
Cac8I GCNNGC 2 cut(s) 185, 1006
CciI TCATGA 2 cut(s) 561, 1206
CfoI GCGC 1 cut(s) 837
Cfr13I GGNCC 1 cut(s) 915
Csp6I GTAC 5 cut(s) 63, 355, 463, 594, 636
CviAII CATG 7 cut(s) 234, 358, 562, 719, 1005, 1207, 1409
CviQI GTAC 5 cut(s) 63, 355, 463, 594, 636
DdeI CTNAG 8 cut(s) 322, 351, 378, 906, 1022, 1292, 1311, 1403
DpnI GATC 8 cut(s) 5, 206, 311, 498, 687, 729, 1020, 1337
DpnII GATC 8 cut(s) 3, 204, 309, 496, 685, 727, 1018, 1335
DraI TTTAAA 1 cut(s) 1368
EaeI YGGCCR 1 cut(s) 300
Eam1104I CTCTTC 1 cut(s) 1420
EarI CTCTTC 1 cut(s) 1420
EciI GGCGGA 1 cut(s) 115
Eco130I CCWWGG 2 cut(s) 456, 539
Eco31I GGTCTC 1 cut(s) 563
Eco57I CTGAAG 1 cut(s) 1407
Eco88I CYCGRG 2 cut(s) 1043, 1052
EcoRI GAATTC 2 cut(s) 251, 1190
EcoRII CCWGG 1 cut(s) 78
EcoT14I CCWWGG 2 cut(s) 456, 539
ErhI CCWWGG 2 cut(s) 456, 539
FaeI CATG 7 cut(s) 237, 361, 565, 722, 1008, 1210, 1412
FalI AAGNNNNNCTT 4 cut(s) 371, 403, 1386, 1418
FatI CATG 7 cut(s) 233, 357, 561, 718, 1004, 1206, 1408
FauI CCCGC 1 cut(s) 833
FauNDI CATATG 1 cut(s) 297
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 4 cut(s) 33, 697, 1155, 1356
FokI GGATG 4 cut(s) 788, 923, 1079, 1390
Fsp4HI GCNGC 4 cut(s) 33, 697, 1155, 1356
FspBI CTAG 3 cut(s) 540, 632, 818
GlaI GCGC 1 cut(s) 836
GluI GCNGC 4 cut(s) 33, 697, 1155, 1356
GsuI CTGGAG 2 cut(s) 101, 1030
HaeIII GGCC 5 cut(s) 183, 238, 302, 856, 916
HapII CCGG 1 cut(s) 647
HhaI GCGC 1 cut(s) 837
Hin1II CATG 7 cut(s) 237, 361, 565, 722, 1008, 1210, 1412
Hin6I GCGC 1 cut(s) 835
HinP1I GCGC 1 cut(s) 835
HindIII AAGCTT 2 cut(s) 1370, 1425
HinfI GANTC 5 cut(s) 105, 120, 242, 535, 764
HpaII CCGG 1 cut(s) 647
HphI GGTGA 1 cut(s) 1221
Hpy166II GTNNAC 2 cut(s) 175, 1107
Hpy188I TCNGA 5 cut(s) 145, 325, 671, 790, 998
Hpy8I GTNNAC 2 cut(s) 175, 1107
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 2 cut(s) 50, 320
HpyCH4III ACNGT 5 cut(s) 99, 467, 640, 1237, 1251
HpyCH4IV ACGT 2 cut(s) 628, 921
HpyCH4V TGCA 7 cut(s) 35, 449, 722, 965, 1033, 1120, 1306
HpyF10VI GCNNNNNNNGC 4 cut(s) 235, 834, 1163, 1397
HpyF3I CTNAG 8 cut(s) 322, 351, 378, 906, 1022, 1292, 1311, 1403
HpySE526I ACGT 2 cut(s) 628, 921
Hsp92II CATG 7 cut(s) 237, 361, 565, 722, 1008, 1210, 1412
HspAI GCGC 1 cut(s) 835
Kzo9I GATC 8 cut(s) 3, 204, 309, 496, 685, 727, 1018, 1335
LguI GCTCTTC 1 cut(s) 1420
LmnI GCTCC 4 cut(s) 145, 616, 973, 1214
Lsp1109I GCAGC 2 cut(s) 19, 1367
LweI GCATC 5 cut(s) 391, 1141, 1288, 1293, 1328
MaeI CTAG 3 cut(s) 540, 632, 818
MaeII ACGT 2 cut(s) 628, 921
MaeIII GTNAC 6 cut(s) 329, 438, 655, 678, 1078, 1259
MalI GATC 8 cut(s) 5, 206, 311, 498, 687, 729, 1020, 1337
MbiI CCGCTC 1 cut(s) 696
MboI GATC 8 cut(s) 3, 204, 309, 496, 685, 727, 1018, 1335
MboII GAAGA 5 cut(s) 59, 62, 210, 941, 1407
MflI RGATCY 2 cut(s) 685, 1018
MhlI GDGCHC 2 cut(s) 150, 1219
MlsI TGGCCA 1 cut(s) 302
MluCI AATT 5 cut(s) 73, 251, 304, 782, 1190
MluNI TGGCCA 1 cut(s) 302
MlyI GAGTC 1 cut(s) 114
MmeI TCCRAC 1 cut(s) 123
Mox20I TGGCCA 1 cut(s) 302
MscI TGGCCA 1 cut(s) 302
MseI TTAA 2 cut(s) 501, 1367
MslI CAYNNNNRTG 1 cut(s) 1149
Msp20I TGGCCA 1 cut(s) 302
MspA1I CMGCKG 1 cut(s) 828
MspI CCGG 1 cut(s) 647
MspR9I CCNGG 1 cut(s) 80
MvaI CCWGG 1 cut(s) 80
MvnI CGCG 1 cut(s) 1284
MwoI GCNNNNNNNGC 4 cut(s) 235, 834, 1163, 1397
NdeI CATATG 1 cut(s) 297
NdeII GATC 8 cut(s) 3, 204, 309, 496, 685, 727, 1018, 1335
NlaIII CATG 7 cut(s) 237, 361, 565, 722, 1008, 1210, 1412
NlaIV GGNNCC 3 cut(s) 162, 673, 975
NmeAIII GCCGAG 1 cut(s) 599
NmuCI GTSAC 3 cut(s) 329, 655, 1078
NspI RCATGY 2 cut(s) 361, 1008
PaeI GCATGC 1 cut(s) 1008
PaeR7I CTCGAG 1 cut(s) 1043
PagI TCATGA 2 cut(s) 561, 1206
PciSI GCTCTTC 1 cut(s) 1420
PcsI WCGNNNNNNNCGW 1 cut(s) 1041
PfeI GAWTC 4 cut(s) 120, 242, 535, 764
PflFI GACNNNGTC 1 cut(s) 1251
PfoI TCCNGGA 1 cut(s) 78
PkrI GCNGC 4 cut(s) 34, 698, 1156, 1357
Ple19I CGATCG 1 cut(s) 1338
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 78
PspGI CCWGG 1 cut(s) 78
PspN4I GGNNCC 3 cut(s) 162, 673, 975
PspPI GGNCC 1 cut(s) 915
PstI CTGCAG 1 cut(s) 37
PsuI RGATCY 2 cut(s) 685, 1018
PsyI GACNNNGTC 1 cut(s) 1251
PvuI CGATCG 1 cut(s) 1338
RsaI GTAC 5 cut(s) 64, 356, 464, 595, 637
RsaNI GTAC 5 cut(s) 63, 355, 463, 594, 636
RseI CAYNNNNRTG 1 cut(s) 1149
SapI GCTCTTC 1 cut(s) 1420
SaqAI TTAA 2 cut(s) 501, 1367
SatI GCNGC 4 cut(s) 33, 697, 1155, 1356
Sau3AI GATC 8 cut(s) 3, 204, 309, 496, 685, 727, 1018, 1335
Sau96I GGNCC 1 cut(s) 915
ScaI AGTACT 2 cut(s) 64, 464
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 1 cut(s) 80
SduI GDGCHC 2 cut(s) 150, 1219
SfaNI GCATC 5 cut(s) 391, 1141, 1288, 1293, 1328
SfcI CTRYAG 4 cut(s) 33, 273, 508, 589
Sfr274I CTCGAG 1 cut(s) 1043
SlaI CTCGAG 1 cut(s) 1043
SmiMI CAYNNNNRTG 1 cut(s) 1149
SmlI CTYRAG 2 cut(s) 893, 1043
SmoI CTYRAG 2 cut(s) 893, 1043
SphI GCATGC 1 cut(s) 1008
Sse9I AATT 5 cut(s) 73, 251, 304, 782, 1190
SsiI CCGC 7 cut(s) 126, 217, 696, 826, 1155, 1182, 1282
SspI AATATT 2 cut(s) 516, 623
SspMI CTAG 3 cut(s) 540, 632, 818
StyD4I CCNGG 1 cut(s) 78
StyI CCWWGG 2 cut(s) 456, 539
TaaI ACNGT 5 cut(s) 99, 467, 640, 1237, 1251
TaiI ACGT 2 cut(s) 631, 924
TaqI TCGA 6 cut(s) 6, 258, 1044, 1188, 1334, 1422
TasI AATT 5 cut(s) 73, 251, 304, 782, 1190
TatI WGTACW 3 cut(s) 62, 354, 462
TauI GCSGC 2 cut(s) 699, 1157
TfiI GAWTC 4 cut(s) 120, 242, 535, 764
Tru1I TTAA 2 cut(s) 501, 1367
Tru9I TTAA 2 cut(s) 501, 1367
TscAI CASTG 3 cut(s) 398, 961, 1227
TseFI GTSAC 3 cut(s) 329, 655, 1078
TseI GCWGC 2 cut(s) 32, 1355
Tsp45I GTSAC 3 cut(s) 329, 655, 1078
TspDTI ATGAA 7 cut(s) 69, 222, 244, 381, 425, 578, 1195
TspGWI ACGGA 4 cut(s) 132, 210, 725, 1161
TspRI CASTG 3 cut(s) 398, 961, 1227
Tth111I GACNNNGTC 1 cut(s) 1251
XapI RAATTY 2 cut(s) 251, 1190
XceI RCATGY 2 cut(s) 361, 1008
XhoI CTCGAG 1 cut(s) 1043
XmaJI CCTAGG 1 cut(s) 539
XmiI GTMKAC 1 cut(s) 174
XspI CTAG 3 cut(s) 540, 632, 818
ZrmI AGTACT 2 cut(s) 64, 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.