AT5G01060

serine threonine-protein kinase At5g41260

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
22684 .. 24934
2251 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G01060.1

Sequence Viewer

Length: 1500 bp
ATGGGATGCATTTGCTTCAAGTCTTGGCGCCGATCATCTTCTTCACCGTCGATTACGTCAACGGTCATAGATGATCTCGAAAACGTCAGAGAGTACGATGCCGACGACGACGGAGGACATTATCCGTTGATTTTCCGTGAGTTCAGTTTAGAACAGCTGAGAATCGCCACCGACGGTTTCTCCGCCGGAAACATCGTATCGGAGCACAACGATTCGGTACCAAACATCGTCTACAAAGGAAAACTCGGCGATGGTCGTCGCATCGCCGTCAAACGGTTTCAAAGACTTTCTTGGCCTGATCCTTTCGAATTCATCAATGAAGCACAAGCTGTTGGGAGATTGAGGAGTGAACATATGGCGAATTTGATCGGTTGTTGTTGTGATGACAACGAGAGATTACTTGTTGCTGAGTATATGCCTAATGGAACATTAGCAAAACATCTTTTTCACTGGGAGAAAAGACCCATGAAATGGGAAATGAGGTTGAAAGTTGCTCTGCATACTGCAAGAGCTTTGGAGTATTGTAATGATAAAGGAATTGATTTATACCATGATCTTAATCCTTACAGGATTATGTTTGATAAGACAGGGATTCCTAAGCTTTCTTGCTTTGGTCTCATGAAGAATAGCCATGAAGGGAAGATTTATAGCACCAACTTAGCTTTTGCTCCTCCCGAGTATTTGCGCCTTGGTACTGTGATAGCGGAGAGCGTCACATTTAGCTTTGGAACCTTGTTATTGGATCTTATGAGCGGCAGACATATTCCTCCAAACCATGCACTTGATTTGTTCCGTGGCAAAAACTATTTGGTGCTAATGGATTCAGCTCTTGATGGTCAGTTCTCTGATGAAGACAGGACAGAACTAATACACGTAGCTTCTCGATGTTTCAAGACTGAACCAGAAGAGAGGCCAAGTATAAAGTTTCTTAAGGCGACTCTTTCTAGACTTCAGAAACGGGCCAAGTTGTGCCCTATTAATGTCAAAAGACCTATGTCTCCTCCATCAAAAAATCTGCCTGAAAAGACTAAACCTGCAACAGAGTCATTGAAGTTGACTCCTTTCGGAGATGCATGTTCTAGAGCGGATCTAAGTAGTATACATGAACTACTAGAGAAACTAGGGTATGAAGAAGATAATGGGGTTGGTAACGAGTTTTCATTCCAAATGTGGACCGGCGAAATGCAAGAGAATATGGACTACAAGAAGCATGGAGATGCCGCGTTTCTTGCGAAAGATTTTGATACTGCCATTGAATTCTACACAGAGTTCATGACTGGAGCTCCTACGGTATCACCAACAGTATTGGCAAGAAGGTGTCTTTGTTACCTAATGACTGAAATGTTCAGCGAGGCTCTAAGCGATGCGATGCAAGCGCAAGTAGCTTCACCGGAATGGCCAATTCCTCTTTACTTACAAGCGGCTTGTCTCTTCAAGCTAGAGATGGAAGCTGAAGCTAAAGAAGCACTTAGACATGGTTCTGCTCTTGAGGCTTATTAG

Protein Analysis

499

Amino Acids

56.54

Weight (kDa)

5.77

Isoelectric Point (pI)

45.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 77 - 313 2.9e-23 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 77 - 309 9.7e-22 Protein kinase domain
TPR_BSK1_C PF25575 357 - 474 7.7e-53 Serine/threonine-protein kinase BSK1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020241)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09240 AT3G09240 AT3G09240 AT5G01060 AT5G01060 AT5G01060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1042
Acc65I GGTACC 1 cut(s) 217
AccB1I GGYRCC 2 cut(s) 27, 217
AccB7I CCANNNNNTGG 1 cut(s) 471
AccBSI CCGCTC 2 cut(s) 753, 1085
AccI GTMKAC 2 cut(s) 231, 1099
AccII CGCG 1 cut(s) 1223
AciI CCGC 6 cut(s) 183, 704, 753, 1085, 1221, 1421
AclWI GGATC 3 cut(s) 293, 750, 1095
AcoI YGGCCR 1 cut(s) 1397
AcsI RAATTY 3 cut(s) 308, 361, 1256
AcuI CTGAAG 2 cut(s) 935, 1473
AcyI GRCGYC 1 cut(s) 28
AfaI GTAC 3 cut(s) 95, 219, 694
AfiI CCNNNNNNNGG 2 cut(s) 273, 471
AflII CTTAAG 1 cut(s) 929
AflIII ACRYGT 1 cut(s) 871
AgsI TTSAA 7 cut(s) 19, 281, 487, 892, 1051, 1256, 1435
Alw21I GWGCWC 2 cut(s) 207, 1285
Alw26I GTCTC 3 cut(s) 620, 1002, 1433
AlwI GGATC 3 cut(s) 293, 750, 1095
Ama87I CYCGRG 1 cut(s) 674
AoxI GGCC 4 cut(s) 293, 911, 960, 1397
ApoI RAATTY 3 cut(s) 308, 361, 1256
AseI ATTAAT 1 cut(s) 978
Asp718I GGTACC 1 cut(s) 217
AspLEI GCGC 3 cut(s) 30, 687, 1378
AspS9I GGNCC 2 cut(s) 960, 1173
AsuHPI GGTGA 3 cut(s) 36, 1287, 1380
AsuII TTCGAA 1 cut(s) 306
AvaI CYCGRG 1 cut(s) 674
AvaII GGWCC 1 cut(s) 1173
BaeGI GKGCMC 1 cut(s) 974
BalI TGGCCA 1 cut(s) 1399
BanI GGYRCC 2 cut(s) 27, 217
BanII GRGCYC 1 cut(s) 1285
BbsI GAAGAC 1 cut(s) 858
Bbv12I GWGCWC 2 cut(s) 207, 1285
BccI CCATC 4 cut(s) 245, 827, 1012, 1438
BceAI ACGGC 1 cut(s) 251
BcoDI GTCTC 3 cut(s) 620, 1002, 1433
BfaI CTAG 5 cut(s) 945, 1080, 1112, 1121, 1439
BfoI RGCGCY 1 cut(s) 31
BfrI CTTAAG 1 cut(s) 929
BfuAI ACCTGC 1 cut(s) 1042
BisI GCNGC 3 cut(s) 754, 1221, 1422
BlsI GCNGC 3 cut(s) 755, 1222, 1423
Bme18I GGWCC 1 cut(s) 1173
BmeT110I CYCGRG 1 cut(s) 674
BmgT120I GGNCC 2 cut(s) 960, 1173
BmiI GGNNCC 3 cut(s) 29, 219, 730
BmrI ACTGGG 1 cut(s) 460
BmsI GCATC 6 cut(s) 88, 270, 1060, 1207, 1354, 1359
BmuI ACTGGG 1 cut(s) 460
BoxI GACNNNNGTC 1 cut(s) 994
BpiI GAAGAC 1 cut(s) 858
BpmI CTGGAG 1 cut(s) 1299
Bpu10I CCTNAGC 1 cut(s) 597
Bpu14I TTCGAA 1 cut(s) 306
BsaAI YACGTR 1 cut(s) 874
BsaBI GATNNNNATC 1 cut(s) 558
BsaHI GRCGYC 1 cut(s) 28
BsaI GGTCTC 1 cut(s) 620
BsaJI CCNNGG 2 cut(s) 688, 793
BsaWI WCCGGW 1 cut(s) 1390
BsaXI ACNNNNNCTCC 4 cut(s) 164, 194, 1267, 1297
Bsc4I CCNNNNNNNGG 2 cut(s) 273, 471
Bse118I RCCGGY 1 cut(s) 1175
Bse1I ACTGG 2 cut(s) 455, 1282
Bse8I GATNNNNATC 1 cut(s) 558
BseDI CCNNGG 2 cut(s) 688, 793
BseGI GGATG 1 cut(s) 11
BseJI GATNNNNATC 1 cut(s) 558
BseLI CCNNNNNNNGG 2 cut(s) 273, 471
BseMII CTCAG 2 cut(s) 149, 399
BseNI ACTGG 2 cut(s) 455, 1282
BseRI GAGGAG 3 cut(s) 358, 660, 990
BseSI GKGCMC 1 cut(s) 974
Bsh1236I CGCG 1 cut(s) 1223
BshFI GGCC 4 cut(s) 295, 913, 962, 1399
BshNI GGYRCC 2 cut(s) 27, 217
BsiHKAI GWGCWC 2 cut(s) 207, 1285
BsiHKCI CYCGRG 1 cut(s) 674
BsiSI CCGG 3 cut(s) 186, 1176, 1391
BslI CCNNNNNNNGG 2 cut(s) 273, 471
BsmAI GTCTC 3 cut(s) 620, 1002, 1433
BsnI GGCC 4 cut(s) 295, 913, 962, 1399
Bso31I GGTCTC 1 cut(s) 620
BsoBI CYCGRG 1 cut(s) 674
Bsp119I TTCGAA 1 cut(s) 306
Bsp1286I GDGCHC 3 cut(s) 207, 974, 1285
Bsp143I GATC 7 cut(s) 32, 73, 298, 366, 553, 742, 1087
BspACI CCGC 6 cut(s) 183, 704, 753, 1085, 1221, 1421
BspANI GGCC 4 cut(s) 295, 913, 962, 1399
BspCNI CTCAG 2 cut(s) 150, 400
BspFNI CGCG 1 cut(s) 1223
BspHI TCATGA 2 cut(s) 618, 1272
BspLI GGNNCC 3 cut(s) 29, 219, 730
BspMI ACCTGC 1 cut(s) 1042
BspPI GGATC 3 cut(s) 293, 750, 1095
BspT104I TTCGAA 1 cut(s) 306
BspT107I GGYRCC 2 cut(s) 27, 217
BspTI CTTAAG 1 cut(s) 929
BspTNI GGTCTC 1 cut(s) 620
BsrBI CCGCTC 2 cut(s) 753, 1085
BsrFI RCCGGY 1 cut(s) 1175
BsrI ACTGG 2 cut(s) 455, 1282
BssAI RCCGGY 1 cut(s) 1175
BssECI CCNNGG 2 cut(s) 688, 793
BssMI GATC 7 cut(s) 32, 73, 298, 366, 553, 742, 1087
BssNAI GTATAC 1 cut(s) 1100
BssNI GRCGYC 1 cut(s) 28
BssT1I CCWWGG 1 cut(s) 688
Bst1107I GTATAC 1 cut(s) 1100
Bst4CI ACNGT 7 cut(s) 48, 64, 176, 276, 697, 1291, 1303
Bst6I CTCTTC 2 cut(s) 900, 1436
BstACI GRCGYC 1 cut(s) 28
BstAFI CTTAAG 1 cut(s) 929
BstBAI YACGTR 1 cut(s) 874
BstBI TTCGAA 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 1374
BstDEI CTNAG 7 cut(s) 158, 408, 597, 658, 1091, 1358, 1469
BstDSI CCRYGG 1 cut(s) 793
BstF5I GGATG 1 cut(s) 11
BstFNI CGCG 1 cut(s) 1223
BstH2I RGCGCY 1 cut(s) 31
BstHHI GCGC 3 cut(s) 30, 687, 1378
BstKTI GATC 7 cut(s) 35, 76, 301, 369, 556, 745, 1090
BstMAI GTCTC 3 cut(s) 620, 1002, 1433
BstMBI GATC 7 cut(s) 32, 73, 298, 366, 553, 742, 1087
BstMWI GCNNNNNNNGC 5 cut(s) 1229, 1373, 1382, 1463, 1490
BstNSI RCATGY 1 cut(s) 1077
BstPAI GACNNNNGTC 1 cut(s) 994
BstSLI GKGCMC 1 cut(s) 974
BstUI CGCG 1 cut(s) 1223
BstV2I GAAGAC 1 cut(s) 858
BstX2I RGATCY 2 cut(s) 742, 1087
BstYI RGATCY 2 cut(s) 742, 1087
BstZ17I GTATAC 1 cut(s) 1100
BsuRI GGCC 4 cut(s) 295, 913, 962, 1399
BtgI CCRYGG 1 cut(s) 793
BtgZI GCGATG 4 cut(s) 247, 264, 1377, 1382
BtsCI GGATG 1 cut(s) 11
BtsIMutI CAGTG 1 cut(s) 448
BveI ACCTGC 1 cut(s) 1042
Cac8I GCNNGC 1 cut(s) 1374
CciI TCATGA 2 cut(s) 618, 1272
CfoI GCGC 3 cut(s) 30, 687, 1378
Cfr10I RCCGGY 1 cut(s) 1175
Cfr13I GGNCC 2 cut(s) 960, 1173
CseI GACGC 1 cut(s) 700
Csp6I GTAC 3 cut(s) 94, 218, 693
CviQI GTAC 3 cut(s) 94, 218, 693
DdeI CTNAG 7 cut(s) 158, 408, 597, 658, 1091, 1358, 1469
DinI GGCGCC 1 cut(s) 29
DpnI GATC 7 cut(s) 34, 75, 300, 368, 555, 744, 1089
DpnII GATC 7 cut(s) 32, 73, 298, 366, 553, 742, 1087
EaeI YGGCCR 1 cut(s) 1397
Eam1104I CTCTTC 2 cut(s) 900, 1436
EarI CTCTTC 2 cut(s) 900, 1436
EciI GGCGGA 1 cut(s) 172
Ecl136II GAGCTC 1 cut(s) 1283
Eco130I CCWWGG 1 cut(s) 688
Eco24I GRGCYC 1 cut(s) 1285
Eco31I GGTCTC 1 cut(s) 620
Eco47I GGWCC 1 cut(s) 1173
Eco53kI GAGCTC 1 cut(s) 1283
Eco57I CTGAAG 2 cut(s) 935, 1473
Eco88I CYCGRG 1 cut(s) 674
EcoICRI GAGCTC 1 cut(s) 1283
EcoRI GAATTC 2 cut(s) 308, 1256
EcoT14I CCWWGG 1 cut(s) 688
EcoT22I ATGCAT 2 cut(s) 11, 1075
EcoT38I GRGCYC 1 cut(s) 1285
EgeI GGCGCC 1 cut(s) 29
EheI GGCGCC 1 cut(s) 29
ErhI CCWWGG 1 cut(s) 688
FalI AAGNNNNNCTT 4 cut(s) 274, 306, 1452, 1484
FauNDI CATATG 1 cut(s) 354
FblI GTMKAC 2 cut(s) 231, 1099
Fnu4HI GCNGC 3 cut(s) 754, 1221, 1422
FokI GGATG 1 cut(s) 18
FriOI GRGCYC 1 cut(s) 1285
Fsp4HI GCNGC 3 cut(s) 754, 1221, 1422
FspBI CTAG 5 cut(s) 945, 1080, 1112, 1121, 1439
GlaI GCGC 3 cut(s) 29, 686, 1377
GluI GCNGC 3 cut(s) 754, 1221, 1422
GsuI CTGGAG 1 cut(s) 1299
HaeII RGCGCY 1 cut(s) 31
HaeIII GGCC 4 cut(s) 295, 913, 962, 1399
HapII CCGG 3 cut(s) 186, 1176, 1391
HgaI GACGC 1 cut(s) 700
HhaI GCGC 3 cut(s) 30, 687, 1378
Hin1I GRCGYC 1 cut(s) 28
Hin6I GCGC 3 cut(s) 28, 685, 1376
HinP1I GCGC 3 cut(s) 28, 685, 1376
HincII GTYRAC 2 cut(s) 60, 1056
HindII GTYRAC 2 cut(s) 60, 1056
HindIII AAGCTT 1 cut(s) 599
HinfI GANTC 7 cut(s) 162, 212, 592, 821, 937, 1043, 1057
HpaII CCGG 3 cut(s) 186, 1176, 1391
HphI GGTGA 3 cut(s) 36, 1287, 1380
Hpy166II GTNNAC 6 cut(s) 60, 232, 350, 1056, 1100, 1173
Hpy188I TCNGA 5 cut(s) 89, 202, 847, 954, 1067
Hpy8I GTNNAC 6 cut(s) 60, 232, 350, 1056, 1100, 1173
Hpy99I CGWCG 6 cut(s) 52, 107, 110, 113, 176, 261
HpyAV CCTTC 2 cut(s) 629, 1308
HpyCH4III ACNGT 7 cut(s) 48, 64, 176, 276, 697, 1291, 1303
HpyCH4IV ACGT 3 cut(s) 56, 84, 873
HpyCH4V TGCA 8 cut(s) 9, 499, 506, 779, 1037, 1073, 1186, 1372
HpyF10VI GCNNNNNNNGC 5 cut(s) 1229, 1373, 1382, 1463, 1490
HpyF3I CTNAG 7 cut(s) 158, 408, 597, 658, 1091, 1358, 1469
HpySE526I ACGT 3 cut(s) 56, 84, 873
Hsp92I GRCGYC 1 cut(s) 28
HspAI GCGC 3 cut(s) 28, 685, 1376
KasI GGCGCC 1 cut(s) 27
KpnI GGTACC 1 cut(s) 221
Kzo9I GATC 7 cut(s) 32, 73, 298, 366, 553, 742, 1087
LmnI GCTCC 4 cut(s) 202, 673, 1280, 1288
LweI GCATC 6 cut(s) 88, 270, 1060, 1207, 1354, 1359
MaeI CTAG 5 cut(s) 945, 1080, 1112, 1121, 1439
MaeII ACGT 3 cut(s) 56, 84, 873
MaeIII GTNAC 3 cut(s) 712, 1148, 1325
MalI GATC 7 cut(s) 34, 75, 300, 368, 555, 744, 1089
MbiI CCGCTC 2 cut(s) 753, 1085
MboI GATC 7 cut(s) 32, 73, 298, 366, 553, 742, 1087
MboII GAAGA 9 cut(s) 30, 33, 634, 652, 863, 917, 1142, 1145, 1423
MflI RGATCY 2 cut(s) 742, 1087
MhlI GDGCHC 3 cut(s) 207, 974, 1285
MlsI TGGCCA 1 cut(s) 1399
MluCI AATT 5 cut(s) 308, 361, 537, 1256, 1401
MluNI TGGCCA 1 cut(s) 1399
Mly113I GGCGCC 1 cut(s) 28
MlyI GAGTC 3 cut(s) 931, 1051, 1052
Mox20I TGGCCA 1 cut(s) 1399
Mph1103I ATGCAT 2 cut(s) 11, 1075
MscI TGGCCA 1 cut(s) 1399
MseI TTAA 3 cut(s) 558, 930, 978
MslI CAYNNNNRTG 2 cut(s) 1215, 1393
Msp20I TGGCCA 1 cut(s) 1399
MspA1I CMGCKG 1 cut(s) 157
MspCI CTTAAG 1 cut(s) 929
MspI CCGG 3 cut(s) 186, 1176, 1391
MvnI CGCG 1 cut(s) 1223
MwoI GCNNNNNNNGC 5 cut(s) 1229, 1373, 1382, 1463, 1490
NarI GGCGCC 1 cut(s) 28
NdeI CATATG 1 cut(s) 354
NdeII GATC 7 cut(s) 32, 73, 298, 366, 553, 742, 1087
NlaIV GGNNCC 3 cut(s) 29, 219, 730
NmeAIII GCCGAG 1 cut(s) 225
NmuCI GTSAC 1 cut(s) 712
NsiI ATGCAT 2 cut(s) 11, 1075
NspI RCATGY 1 cut(s) 1077
NspV TTCGAA 1 cut(s) 306
PagI TCATGA 2 cut(s) 618, 1272
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PfeI GAWTC 4 cut(s) 162, 212, 592, 821
PflMI CCANNNNNTGG 1 cut(s) 471
PkrI GCNGC 3 cut(s) 755, 1222, 1423
PleI GAGTC 3 cut(s) 931, 1051, 1051
PluTI GGCGCC 1 cut(s) 31
PpsI GAGTC 3 cut(s) 931, 1051, 1051
Ppu21I YACGTR 1 cut(s) 874
PshAI GACNNNNGTC 1 cut(s) 994
PshBI ATTAAT 1 cut(s) 978
Psp124BI GAGCTC 1 cut(s) 1285
PspN4I GGNNCC 3 cut(s) 29, 219, 730
PspPI GGNCC 2 cut(s) 960, 1173
PsuI RGATCY 2 cut(s) 742, 1087
PvuII CAGCTG 1 cut(s) 157
RsaI GTAC 3 cut(s) 95, 219, 694
RsaNI GTAC 3 cut(s) 94, 218, 693
RseI CAYNNNNRTG 2 cut(s) 1215, 1393
SacI GAGCTC 1 cut(s) 1285
SaqAI TTAA 3 cut(s) 558, 930, 978
SatI GCNGC 3 cut(s) 754, 1221, 1422
Sau3AI GATC 7 cut(s) 32, 73, 298, 366, 553, 742, 1087
Sau96I GGNCC 2 cut(s) 960, 1173
SchI GAGTC 3 cut(s) 931, 1051, 1052
SduI GDGCHC 3 cut(s) 207, 974, 1285
SfaNI GCATC 6 cut(s) 88, 270, 1060, 1207, 1354, 1359
SfoI GGCGCC 1 cut(s) 29
SfuI TTCGAA 1 cut(s) 306
SinI GGWCC 1 cut(s) 1173
SmiMI CAYNNNNRTG 2 cut(s) 1215, 1393
SmlI CTYRAG 2 cut(s) 929, 1487
SmoI CTYRAG 2 cut(s) 929, 1487
Sse9I AATT 5 cut(s) 308, 361, 537, 1256, 1401
SsiI CCGC 6 cut(s) 183, 704, 753, 1085, 1221, 1421
SspDI GGCGCC 1 cut(s) 27
SspMI CTAG 5 cut(s) 945, 1080, 1112, 1121, 1439
SstI GAGCTC 1 cut(s) 1285
StyI CCWWGG 1 cut(s) 688
TaaI ACNGT 7 cut(s) 48, 64, 176, 276, 697, 1291, 1303
TaiI ACGT 3 cut(s) 59, 87, 876
TaqI TCGA 4 cut(s) 50, 78, 306, 883
TasI AATT 5 cut(s) 308, 361, 537, 1256, 1401
TauI GCSGC 3 cut(s) 756, 1223, 1424
TfiI GAWTC 4 cut(s) 162, 212, 592, 821
Tru1I TTAA 3 cut(s) 558, 930, 978
Tru9I TTAA 3 cut(s) 558, 930, 978
TscAI CASTG 1 cut(s) 455
TseFI GTSAC 1 cut(s) 712
Tsp45I GTSAC 1 cut(s) 712
TspGWI ACGGA 4 cut(s) 114, 125, 126, 782
TspRI CASTG 1 cut(s) 455
Van91I CCANNNNNTGG 1 cut(s) 471
Vha464I CTTAAG 1 cut(s) 929
VpaK11BI GGWCC 1 cut(s) 1173
VspI ATTAAT 1 cut(s) 978
XapI RAATTY 3 cut(s) 308, 361, 1256
XbaI TCTAGA 2 cut(s) 944, 1079
XceI RCATGY 1 cut(s) 1077
XmiI GTMKAC 2 cut(s) 231, 1099
XspI CTAG 5 cut(s) 945, 1080, 1112, 1121, 1439
Zsp2I ATGCAT 2 cut(s) 11, 1075
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.