Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0026737

Physical Location & Seq

Genomic Coordinates Forward (+)

5109782 .. 5111608

Gene Structure 1827 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G15170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGATGTTGATGTGTTTAACGGTTGGGGGAGGCCAAGATTTGAAGATGAATCCCTTATGCCACCTGGGTTTAGGTTTCATCCAACTGATGAAGAGCTGATCACTTACTATCTCCTCAAGAAGGTTCTTGACTCTAATTTCTCTTGTGCCGCCATTTCTCAAGTTGATCTCAACAAGTCTGAGCCTTGGGAGCTTCCTGAGAAAGCGAAAATGGGGGAGAAGGAGTGGTACTTCTTCACACTAAGAGACCGTAAATACCCAACGGGACTGAGAACGAACAGAGCAACAGAAGCTGGTTACTGGAAAGCCACTGGTAAAGACAGAGAGATCAAAAGCTCAAAGACAAAATCACTTCTCGGGATGAAGAAAACTCTTGTCTTTTACAAAGGCAGAGCTCCTAAAGGAGAGAAGAGTTGTTGGGTCATGCATGAGTATCGCCTTGACGGCAAATTCTCTTACCATTACATTTCCTCCTCCGCTAAGGATGAATGGGTTCTCTGTAAAGTTTGTCTGAAAAGCGGCGTAGTTAGTAGAGAGACGAACTTGATCTCTTCTTCTTCTTCTTCTGCCGTCACCGGAGAGTTCTCCTCTGCCGGTTCTGCAATTGCTCCGATCATCAATACCTTTGCGACGGAGCACGTGTCCTGTTTCTCCAATAACTCTGCTGCTCATACCGATGCGAGCTTTCATACATTCCTTCCCGCTCCACCGCCGTCACTGCCCCCACGTCAGCCACGTCACGTCGGTGATGGCGTGGCGTTTGGTCAGTTTCTGGATTTGGGATCATCGGGACAGATTGATTTCGATGCAGCAGCAGCAGCGTTCTTTCCGAATCTACCTTCTCTGCCTCCCACGGTTCTTCCTCCTCCTCCGTCATTTGCAATGTACGGTGGAGGCTCCCCCGCCGTGAGTGTGTGGCCGTTTACTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0048859 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0051302 GO:0051782 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090421 GO:0090567 GO:0090691 GO:0090696 GO:0090709 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:1905428 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

310

Amino Acids

34.23

Weight (kDa)

8.18

Isoelectric Point (pI)

46.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	21 - 147	2.5e-49	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0026737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15170
rosa_wichuraiana	Rw7G003830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	704
AciI	CCGC	6 cut(s)	150, 477, 519, 702, 710, 903
AclWI	GGATC	1 cut(s)	790
AcoI	YGGCCR	1 cut(s)	917
AcsI	RAATTY	1 cut(s)	449
AcvI	CACGTG	1 cut(s)	640
AfaI	GTAC	2 cut(s)	230, 887
AfiI	CCNNNNNNNGG	1 cut(s)	121
AflIII	ACRYGT	1 cut(s)	639
AgsI	TTSAA	1 cut(s)	44
AjiI	CACGTC	3 cut(s)	728, 737, 742
AjnI	CCWGG	1 cut(s)	64
AleI	CACNNNNGTG	1 cut(s)	744
AluBI	AGCT	6 cut(s)	97, 193, 293, 336, 395, 684
AluI	AGCT	6 cut(s)	97, 193, 293, 336, 395, 684
Alw21I	GWGCWC	2 cut(s)	397, 639
Alw26I	GTCTC	2 cut(s)	240, 530
AlwI	GGATC	1 cut(s)	790
AlwNI	CAGNNNCTG	2 cut(s)	293, 772
Ama87I	CYCGRG	1 cut(s)	356
AoxI	GGCC	2 cut(s)	32, 917
ApeKI	GCWGC	5 cut(s)	665, 809, 812, 815, 818
ApoI	RAATTY	1 cut(s)	449
Asp700I	GAANNNNTTC	1 cut(s)	492
AsuHPI	GGTGA	2 cut(s)	565, 758
AvaI	CYCGRG	1 cut(s)	356
BanII	GRGCYC	1 cut(s)	397
BarI	GAAGNNNNNNTAC	2 cut(s)	212, 244
BbrPI	CACGTG	1 cut(s)	640
Bbv12I	GWGCWC	2 cut(s)	397, 639
BbvI	GCAGC	5 cut(s)	652, 821, 824, 827, 830
BccI	CCATC	1 cut(s)	743
BceAI	ACGGC	5 cut(s)	460, 554, 697, 890, 904
BcgI	CGANNNNNNTGC	2 cut(s)	416, 450
BciT130I	CCWGG	1 cut(s)	66
BclI	TGATCA	1 cut(s)	99
BcoDI	GTCTC	2 cut(s)	240, 530
BglI	GCCNNNNNGGC	1 cut(s)	444
BisI	GCNGC	7 cut(s)	150, 520, 666, 810, 813, 816, 819
BlsI	GCNGC	7 cut(s)	151, 521, 667, 811, 814, 817, 820
Bme1390I	CCNGG	1 cut(s)	66
BmeT110I	CYCGRG	1 cut(s)	356
BmgBI	CACGTC	3 cut(s)	728, 737, 742
BmiI	GGNNCC	1 cut(s)	898
BmrFI	CCNGG	1 cut(s)	66
BmsI	GCATC	2 cut(s)	667, 796
BplI	GAGNNNNNCTC	2 cut(s)	572, 604
Bpu10I	CCTNAGC	1 cut(s)	480
BpuEI	CTTGAG	2 cut(s)	101, 144
BsaAI	YACGTR	1 cut(s)	640
BsaI	GGTCTC	1 cut(s)	240
BsaJI	CCNNGG	3 cut(s)	65, 185, 852
BsaWI	WCCGGW	1 cut(s)	575
BsaXI	ACNNNNNCTCC	6 cut(s)	209, 239, 455, 485, 626, 656
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse118I	RCCGGY	1 cut(s)	593
Bse1I	ACTGG	2 cut(s)	305, 316
Bse3DI	GCAATG	1 cut(s)	888
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	3 cut(s)	65, 185, 852
BseGI	GGATG	4 cut(s)	10, 79, 366, 490
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMI	GCAATG	1 cut(s)	888
BseMII	CTCAG	3 cut(s)	171, 189, 260
BseNI	ACTGG	2 cut(s)	305, 316
BseRI	GAGGAG	5 cut(s)	104, 463, 577, 855, 858
BseXI	GCAGC	5 cut(s)	652, 821, 824, 827, 830
BshFI	GGCC	2 cut(s)	34, 919
BsiHKAI	GWGCWC	2 cut(s)	397, 639
BsiHKCI	CYCGRG	1 cut(s)	356
BsiSI	CCGG	2 cut(s)	576, 594
BslFI	GGGAC	2 cut(s)	279, 804
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmAI	GTCTC	2 cut(s)	240, 530
BsmBI	CGTCTC	1 cut(s)	530
BsmFI	GGGAC	2 cut(s)	279, 804
BsnI	GGCC	2 cut(s)	34, 919
Bso31I	GGTCTC	1 cut(s)	240
BsoBI	CYCGRG	1 cut(s)	356
Bsp1286I	GDGCHC	2 cut(s)	397, 639
Bsp143I	GATC	6 cut(s)	99, 166, 327, 546, 612, 782
BspACI	CCGC	6 cut(s)	150, 477, 519, 702, 710, 903
BspANI	GGCC	2 cut(s)	34, 919
BspCNI	CTCAG	3 cut(s)	172, 190, 261
BspLI	GGNNCC	1 cut(s)	898
BspPI	GGATC	1 cut(s)	790
BspQI	GCTCTTC	1 cut(s)	87
BspTNI	GGTCTC	1 cut(s)	240
BsrBI	CCGCTC	1 cut(s)	704
BsrDI	GCAATG	1 cut(s)	888
BsrFI	RCCGGY	1 cut(s)	593
BsrI	ACTGG	2 cut(s)	305, 316
BssAI	RCCGGY	1 cut(s)	593
BssECI	CCNNGG	3 cut(s)	65, 185, 852
BssMI	GATC	6 cut(s)	99, 166, 327, 546, 612, 782
BssT1I	CCWWGG	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	4 cut(s)	23, 251, 856, 890
Bst6I	CTCTTC	3 cut(s)	87, 404, 556
BstBAI	YACGTR	1 cut(s)	640
BstC8I	GCNNGC	1 cut(s)	682
BstDEI	CTNAG	5 cut(s)	180, 198, 242, 269, 480
BstDSI	CCRYGG	1 cut(s)	852
BstENI	CCTNNNNNAGG	1 cut(s)	119
BstF5I	GGATG	4 cut(s)	10, 79, 366, 490
BstKTI	GATC	6 cut(s)	102, 169, 330, 549, 615, 785
BstMAI	GTCTC	2 cut(s)	240, 530
BstMBI	GATC	6 cut(s)	99, 166, 327, 546, 612, 782
BstMWI	GCNNNNNNNGC	7 cut(s)	190, 290, 444, 599, 718, 815, 818
BstNI	CCWGG	1 cut(s)	66
BstSCI	CCNGG	1 cut(s)	64
BstV1I	GCAGC	5 cut(s)	652, 821, 824, 827, 830
BsuRI	GGCC	2 cut(s)	34, 919
BtgI	CCRYGG	1 cut(s)	852
BtrI	CACGTC	3 cut(s)	728, 737, 742
BtsCI	GGATG	4 cut(s)	10, 79, 366, 490
BtsI	GCAGTG	1 cut(s)	716
BtsIMutI	CAGTG	2 cut(s)	309, 716
Cac8I	GCNNGC	1 cut(s)	682
CaiI	CAGNNNCTG	2 cut(s)	293, 772
Cfr10I	RCCGGY	1 cut(s)	593
Csp6I	GTAC	2 cut(s)	229, 886
CviAII	CATG	2 cut(s)	424, 428
CviQI	GTAC	2 cut(s)	229, 886
DdeI	CTNAG	5 cut(s)	180, 198, 242, 269, 480
DpnI	GATC	6 cut(s)	101, 168, 329, 548, 614, 784
DpnII	GATC	6 cut(s)	99, 166, 327, 546, 612, 782
EaeI	YGGCCR	1 cut(s)	917
Eam1104I	CTCTTC	3 cut(s)	87, 404, 556
EarI	CTCTTC	3 cut(s)	87, 404, 556
Ecl136II	GAGCTC	1 cut(s)	395
Eco130I	CCWWGG	1 cut(s)	185
Eco24I	GRGCYC	1 cut(s)	397
Eco31I	GGTCTC	1 cut(s)	240
Eco53kI	GAGCTC	1 cut(s)	395
Eco72I	CACGTG	1 cut(s)	640
Eco88I	CYCGRG	1 cut(s)	356
EcoICRI	GAGCTC	1 cut(s)	395
EcoNI	CCTNNNNNAGG	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	185
EcoT22I	ATGCAT	1 cut(s)	429
EcoT38I	GRGCYC	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	185
Esp3I	CGTCTC	1 cut(s)	530
FaeI	CATG	2 cut(s)	427, 431
FaiI	YATR	5 cut(s)	59, 425, 429, 672, 690
FaqI	GGGAC	2 cut(s)	279, 804
FatI	CATG	2 cut(s)	423, 427
FauI	CCCGC	2 cut(s)	709, 910
FbaI	TGATCA	1 cut(s)	99
Fnu4HI	GCNGC	7 cut(s)	150, 520, 666, 810, 813, 816, 819
FokI	GGATG	4 cut(s)	17, 66, 373, 497
FriOI	GRGCYC	1 cut(s)	397
Fsp4HI	GCNGC	7 cut(s)	150, 520, 666, 810, 813, 816, 819
GluI	GCNGC	7 cut(s)	150, 520, 666, 810, 813, 816, 819
HaeIII	GGCC	2 cut(s)	34, 919
HapII	CCGG	2 cut(s)	576, 594
Hin1II	CATG	2 cut(s)	427, 431
HinfI	GANTC	3 cut(s)	50, 131, 832
HpaII	CCGG	2 cut(s)	576, 594
HphI	GGTGA	2 cut(s)	565, 758
Hpy166II	GTNNAC	1 cut(s)	924
Hpy188I	TCNGA	5 cut(s)	181, 513, 612, 831, 932
Hpy188III	TCNNGA	6 cut(s)	118, 128, 197, 358, 773, 789
Hpy8I	GTNNAC	1 cut(s)	924
Hpy99I	CGWCG	2 cut(s)	634, 746
HpyAV	CCTTC	4 cut(s)	115, 214, 707, 849
HpyCH4III	ACNGT	4 cut(s)	23, 251, 856, 890
HpyCH4IV	ACGT	4 cut(s)	639, 727, 736, 741
HpyCH4V	TGCA	4 cut(s)	427, 602, 809, 881
HpyF10VI	GCNNNNNNNGC	7 cut(s)	190, 290, 444, 599, 718, 815, 818
HpyF3I	CTNAG	5 cut(s)	180, 198, 242, 269, 480
HpySE526I	ACGT	4 cut(s)	639, 727, 736, 741
Hsp92II	CATG	2 cut(s)	427, 431
Ksp22I	TGATCA	1 cut(s)	99
Kzo9I	GATC	6 cut(s)	99, 166, 327, 546, 612, 782
LguI	GCTCTTC	1 cut(s)	87
LmnI	GCTCC	6 cut(s)	190, 400, 613, 634, 709, 902
Lsp1109I	GCAGC	5 cut(s)	652, 821, 824, 827, 830
LweI	GCATC	2 cut(s)	667, 796
MaeII	ACGT	4 cut(s)	639, 727, 736, 741
MaeIII	GTNAC	4 cut(s)	296, 571, 714, 737
MalI	GATC	6 cut(s)	101, 168, 329, 548, 614, 784
MbiI	CCGCTC	1 cut(s)	704
MboI	GATC	6 cut(s)	99, 166, 327, 546, 612, 782
MfeI	CAATTG	1 cut(s)	603
MhlI	GDGCHC	2 cut(s)	397, 639
MluCI	AATT	3 cut(s)	136, 449, 603
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	107
Mph1103I	ATGCAT	1 cut(s)	429
MroXI	GAANNNNTTC	1 cut(s)	492
MseI	TTAA	1 cut(s)	18
MslI	CAYNNNNRTG	2 cut(s)	675, 744
MspI	CCGG	2 cut(s)	576, 594
MspR9I	CCNGG	1 cut(s)	66
MunI	CAATTG	1 cut(s)	603
MvaI	CCWGG	1 cut(s)	66
MwoI	GCNNNNNNNGC	7 cut(s)	190, 290, 444, 599, 718, 815, 818
NdeII	GATC	6 cut(s)	99, 166, 327, 546, 612, 782
NlaIII	CATG	2 cut(s)	427, 431
NlaIV	GGNNCC	1 cut(s)	898
NmuCI	GTSAC	3 cut(s)	571, 714, 737
NsiI	ATGCAT	1 cut(s)	429
OliI	CACNNNNGTG	1 cut(s)	744
PciSI	GCTCTTC	1 cut(s)	87
PcsI	WCGNNNNNNNCGW	2 cut(s)	733, 750
PdmI	GAANNNNTTC	1 cut(s)	492
PfeI	GAWTC	2 cut(s)	50, 832
PkrI	GCNGC	7 cut(s)	151, 521, 667, 811, 814, 817, 820
PleI	GAGTC	1 cut(s)	125
PmaCI	CACGTG	1 cut(s)	640
PmlI	CACGTG	1 cut(s)	640
PpsI	GAGTC	1 cut(s)	125
Ppu21I	YACGTR	1 cut(s)	640
Psp124BI	GAGCTC	1 cut(s)	397
Psp6I	CCWGG	1 cut(s)	64
PspCI	CACGTG	1 cut(s)	640
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	898
PstNI	CAGNNNCTG	2 cut(s)	293, 772
RsaI	GTAC	2 cut(s)	230, 887
RsaNI	GTAC	2 cut(s)	229, 886
RseI	CAYNNNNRTG	2 cut(s)	675, 744
SacI	GAGCTC	1 cut(s)	397
SapI	GCTCTTC	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	7 cut(s)	150, 520, 666, 810, 813, 816, 819
Sau3AI	GATC	6 cut(s)	99, 166, 327, 546, 612, 782
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	66
SduI	GDGCHC	2 cut(s)	397, 639
SfaNI	GCATC	2 cut(s)	667, 796
SmiMI	CAYNNNNRTG	2 cut(s)	675, 744
SmlI	CTYRAG	2 cut(s)	116, 159
SmoI	CTYRAG	2 cut(s)	116, 159
Sse9I	AATT	3 cut(s)	136, 449, 603
SsiI	CCGC	6 cut(s)	150, 477, 519, 702, 710, 903
SstI	GAGCTC	1 cut(s)	397
StyD4I	CCNGG	1 cut(s)	64
StyI	CCWWGG	1 cut(s)	185
TaaI	ACNGT	4 cut(s)	23, 251, 856, 890
TaiI	ACGT	4 cut(s)	642, 730, 739, 744
TaqI	TCGA	1 cut(s)	804
TasI	AATT	3 cut(s)	136, 449, 603
TauI	GCSGC	2 cut(s)	152, 522
TfiI	GAWTC	2 cut(s)	50, 832
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	2 cut(s)	316, 723
TseFI	GTSAC	3 cut(s)	571, 714, 737
TseI	GCWGC	5 cut(s)	665, 809, 812, 815, 818
Tsp45I	GTSAC	3 cut(s)	571, 714, 737
TspDTI	ATGAA	6 cut(s)	63, 68, 105, 377, 501, 677
TspGWI	ACGGA	2 cut(s)	647, 861
TspRI	CASTG	2 cut(s)	316, 723
XagI	CCTNNNNNAGG	1 cut(s)	119
XapI	RAATTY	1 cut(s)	449
XmnI	GAANNNNTTC	1 cut(s)	492
Zsp2I	ATGCAT	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.