Rw7G003830
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0026737
Physical Location & Seq
Forward (+)
3116415 .. 3118010
1596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G003830.1

Sequence Viewer

Length: 486 bp
ATGCTGCTCAGGGATGTAAAAGTGCCAAGTGCCTTATTAGAAAAGTTTGCTGTTCAAGCTGGAACTTTCAAGGAAGATGATCAGATTGATTTGCCACCCGGGTTTCGATTCCATCCAACTGATGAAGAGCTTATTTCTCACTACCTGCACAGGAAGGTTGTCGATTCCAACTTCAGCTGCAAAGCAATTGGTGATGTGGACTTGAACAAGTCTGAGCCTTGGGATTTGCCATATAAAGTGAAAATGGGAGAGAAGGAATGGTACTTTTTCTGTGTGAGGGATAGAAAGTATCCAACTGGTCTGAGGACAAACAGAGCAACTGAAGCTGGATATTGGAAAGCTACTGGGAAAGACAAGGAGATTTACAAAGGGAAATCCTTGGTTGGCATGGAGAAGACCCTTGTTTTCTACAGGGGCAGAGCCCCAATAGGTGAAAAGAACAAATGGGTGATTTGTAGGGTCTTTGAAAAAATCTGCTGGTGGTAA

Protein Analysis

161

Amino Acids

18.89

Weight (kDa)

9.08

Isoelectric Point (pI)

25.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 32 - 151 8.6e-44 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0026737)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15170
rosa_wichuraiana Rw7G003830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 153
AcuI CTGAAG 2 cut(s) 157, 342
AfaI GTAC 1 cut(s) 263
AgsI TTSAA 4 cut(s) 56, 70, 205, 467
AluBI AGCT 5 cut(s) 59, 130, 177, 326, 341
AluI AGCT 5 cut(s) 59, 130, 177, 326, 341
Ama87I CYCGRG 1 cut(s) 98
ApeKI GCWGC 2 cut(s) 4, 177
AsuC2I CCSGG 2 cut(s) 99, 100
AsuHPI GGTGA 3 cut(s) 203, 443, 460
AvaI CYCGRG 1 cut(s) 98
BanII GRGCYC 1 cut(s) 424
BarI GAAGNNNNNNTAC 2 cut(s) 245, 277
BbsI GAAGAC 1 cut(s) 401
BbvI GCAGC 1 cut(s) 164
BccI CCATC 1 cut(s) 120
BciVI GTATCC 1 cut(s) 300
BclI TGATCA 1 cut(s) 79
BcnI CCSGG 2 cut(s) 99, 100
BfmI CTRYAG 1 cut(s) 409
BfuAI ACCTGC 1 cut(s) 153
BfuI GTATCC 1 cut(s) 300
BisI GCNGC 2 cut(s) 5, 178
BlsI GCNGC 2 cut(s) 6, 179
Bme1390I CCNGG 2 cut(s) 99, 100
BmeT110I CYCGRG 1 cut(s) 98
BmrFI CCNGG 2 cut(s) 99, 100
BmrI ACTGGG 1 cut(s) 354
BmuI ACTGGG 1 cut(s) 354
BpiI GAAGAC 1 cut(s) 401
Bpu10I CCTNAGC 1 cut(s) 8
BpuMI CCSGG 2 cut(s) 99, 100
BsaJI CCNNGG 3 cut(s) 98, 218, 378
Bse1I ACTGG 2 cut(s) 301, 349
BseDI CCNNGG 3 cut(s) 98, 218, 378
BseGI GGATG 2 cut(s) 19, 112
BseMII CTCAG 3 cut(s) 22, 204, 293
BseNI ACTGG 2 cut(s) 301, 349
BseXI GCAGC 1 cut(s) 164
BsgI GTGCAG 1 cut(s) 131
BsiHKCI CYCGRG 1 cut(s) 98
BsiSI CCGG 1 cut(s) 99
BsoBI CYCGRG 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 424
Bsp143I GATC 1 cut(s) 79
BspCNI CTCAG 3 cut(s) 21, 205, 294
BspMI ACCTGC 1 cut(s) 153
BspQI GCTCTTC 1 cut(s) 120
BsrI ACTGG 2 cut(s) 301, 349
BssECI CCNNGG 3 cut(s) 98, 218, 378
BssMI GATC 1 cut(s) 79
BssT1I CCWWGG 2 cut(s) 218, 378
Bst6I CTCTTC 1 cut(s) 120
BstDEI CTNAG 3 cut(s) 8, 213, 302
BstF5I GGATG 2 cut(s) 19, 112
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstMWI GCNNNNNNNGC 2 cut(s) 56, 323
BstSCI CCNGG 2 cut(s) 97, 98
BstSFI CTRYAG 1 cut(s) 409
BstV1I GCAGC 1 cut(s) 164
BstV2I GAAGAC 1 cut(s) 401
BsuI GTATCC 1 cut(s) 300
BtsCI GGATG 2 cut(s) 19, 112
BveI ACCTGC 1 cut(s) 153
Cfr9I CCCGGG 1 cut(s) 98
Csp6I GTAC 1 cut(s) 262
CviAII CATG 1 cut(s) 388
CviJI RGCY 7 cut(s) 59, 130, 177, 217, 326, 341, 422
CviKI_1 RGCY 7 cut(s) 59, 130, 177, 217, 326, 341, 422
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 3 cut(s) 8, 213, 302
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco130I CCWWGG 2 cut(s) 218, 378
Eco24I GRGCYC 1 cut(s) 424
Eco57I CTGAAG 2 cut(s) 157, 342
Eco88I CYCGRG 1 cut(s) 98
EcoT14I CCWWGG 2 cut(s) 218, 378
EcoT38I GRGCYC 1 cut(s) 424
ErhI CCWWGG 2 cut(s) 218, 378
FaeI CATG 1 cut(s) 391
FaiI YATR 3 cut(s) 232, 234, 389
FatI CATG 1 cut(s) 387
FbaI TGATCA 1 cut(s) 79
Fnu4HI GCNGC 2 cut(s) 5, 178
FokI GGATG 2 cut(s) 26, 99
FriOI GRGCYC 1 cut(s) 424
Fsp4HI GCNGC 2 cut(s) 5, 178
GluI GCNGC 2 cut(s) 5, 178
HapII CCGG 1 cut(s) 99
Hin1II CATG 1 cut(s) 391
HinfI GANTC 2 cut(s) 108, 164
HpaII CCGG 1 cut(s) 99
HphI GGTGA 3 cut(s) 203, 443, 460
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 3 cut(s) 84, 214, 303
Hpy8I GTNNAC 1 cut(s) 199
HpyAV CCTTC 2 cut(s) 148, 247
HpyCH4V TGCA 2 cut(s) 148, 180
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 323
HpyF3I CTNAG 3 cut(s) 8, 213, 302
Hsp92II CATG 1 cut(s) 391
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 1 cut(s) 79
LguI GCTCTTC 1 cut(s) 120
LpnPI CCDG 9 cut(s) 45, 112, 136, 158, 282, 312, 330, 397, 463
Lsp1109I GCAGC 1 cut(s) 164
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 3 cut(s) 86, 137, 406
MfeI CAATTG 1 cut(s) 186
MhlI GDGCHC 1 cut(s) 424
MluCI AATT 1 cut(s) 186
MmeI TCCRAC 3 cut(s) 140, 192, 317
MnlI CCTC 2 cut(s) 270, 297
MspA1I CMGCKG 1 cut(s) 177
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 2 cut(s) 99, 100
MunI CAATTG 1 cut(s) 186
MwoI GCNNNNNNNGC 2 cut(s) 56, 323
NciI CCSGG 2 cut(s) 99, 100
NdeII GATC 1 cut(s) 79
NlaIII CATG 1 cut(s) 391
PciSI GCTCTTC 1 cut(s) 120
PfeI GAWTC 2 cut(s) 108, 164
PkrI GCNGC 2 cut(s) 6, 179
PvuII CAGCTG 1 cut(s) 177
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SapI GCTCTTC 1 cut(s) 120
SatI GCNGC 2 cut(s) 5, 178
Sau3AI GATC 1 cut(s) 79
ScrFI CCNGG 2 cut(s) 99, 100
SduI GDGCHC 1 cut(s) 424
SetI ASST 8 cut(s) 61, 132, 147, 159, 179, 328, 343, 433
SfcI CTRYAG 1 cut(s) 409
SmaI CCCGGG 1 cut(s) 100
Sse9I AATT 1 cut(s) 186
StyD4I CCNGG 2 cut(s) 97, 98
StyI CCWWGG 2 cut(s) 218, 378
TaqI TCGA 2 cut(s) 106, 162
TasI AATT 1 cut(s) 186
TfiI GAWTC 2 cut(s) 108, 164
TseI GCWGC 2 cut(s) 4, 177
TspDTI ATGAA 1 cut(s) 138
TspMI CCCGGG 1 cut(s) 98
XmaI CCCGGG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.