AT3G25140

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
9154508 .. 9157012
2505 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G25140.1

Sequence Viewer

Length: 1680 bp
ATGGCTAATCACCACCGACTTTTACGCGGCGGCGGATCTCCGGCCATAATCGGTGGCAGAATCACACTCACAGCTTTCGCTTCCACTATCGCACTCTTCCTCTTCACTCTCTCCTTCTTCTTCGCTTCAGATTCTAACGATTCTCCTGATCTCCTTCTTCCCGGTGTTGAGTACTCTAATGGAGTCGGATCTAGAAGATCCATGTTGGATATCAAATCGGATCCGCTTAAGCCACGGTTGATTCAGATCCGGAAACAAGCTGATGATCATCGGTCATTAGCATTAGCTTATGCTTCTTACGCGAGAAAGCTTAAGCTCGAGAATTCGAAACTCGTCAGGATCTTCGCTGATCTTTCGAGGAATTACACGGATCTGATTAACAAACCGACGTATCGAGCTTTGTATGATTCTGATGGAGCCTCGATTGAAGAATCTGTGCTTAGGCAATTTGAGAAAGAAGTTAAGGAACGGATTAAAATGACTCGTCAAGTGATTGCTGAAGCTAAAGAGTCTTTTGATAATCAGTTGAAGATTCAGAAGCTGAAAGATACGATTTTCGCTGTTAACGAACAGTTAACTAATGCTAAGAAGCAAGGTGCGTTTTCGAGTTTGATCGCTGCGAAATCGATTCCGAAAGGATTGCATTGTCTTGCTATGAGGCTGATGGAAGAGAGGATTGCTCACCCTGAGAAGTATACTGATGAAGGGAAAGATAGACCGCGGGAGCTCGAGGATCCGAATCTTTACCATTACGCTATATTTTCGGATAATGTGATTGCGGCTTCGGTGGTTGTGAACTCTGCTGTGAAGAATGCTAAGGAGCCGTGGAAGCATGTTTTTCACGTTGTGACTGATAAGATGAATCTTGGAGCTATGCAGGTTATGTTTAAACTGAAGGAGTATAAAGGAGCTCATGTAGAAGTTAAAGCTGTTGAGGATTATACGTTTTTGAACTCTTCGTATGTGCCTGTGTTGAAGCAGTTAGAATCTGCGAATCTTCAGAAGTTTTATTTCGAGAATAAGCTCGAGAATGCGACGAAAGATACCACGAATATGAAGTTCAGGAACCCCAAGTATTTATCTATATTGAATCACTTGAGGTTTTATTTACCCGAGATGTACCCGAAACTACATAGGATACTGTTTTTGGACGATGATGTGGTTGTGCAGAAGGATTTAACGGGTCTGTGGGAGATTGATATGGATGGGAAAGTGAATGGAGCTGTAGAGACTTGTTTTGGGTCGTTTCATCGGTACGCTCAATACATGAATTTCTCACATCCTTTGATCAAAGAGAAGTTTAATCCCAAAGCATGTGCGTGGGCGTATGGAATGAACTTCTTTGATCTTGATGCTTGGAGAAGAGAGAAGTGCACAGAAGAATATCACTACTGGCAAAATCTGAACGAGAACAGGGCTCTATGGAAACTGGGGACGTTACCACCGGGACTGATCACCTTTTACTCAACCACAAAGCCGCTGGACAAATCATGGCATGTGCTTGGGCTGGGTTACAATCCGAGCATTAGCATGGATGAGATCCGCAACGCTGCAGTGGTACACTTCAACGGTAACATGAAGCCATGGCTTGACATAGCTATGAACCAGTTTCGACCACTTTGGACCAAACACGTCGACTATGACCTCGAGTTTGTTCAGGCTTGCAATTTTGGCCTCTGA

Protein Analysis

559

Amino Acids

64.37

Weight (kDa)

8.87

Isoelectric Point (pI)

34.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 217 - 533 2.2e-83 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013200)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 868
AccI GTMKAC 2 cut(s) 695, 1635
AccII CGCG 3 cut(s) 27, 302, 721
AccIII TCCGGA 1 cut(s) 249
AciI CCGC 9 cut(s) 27, 30, 33, 224, 719, 721, 779, 1478, 1543
AcoI YGGCCR 1 cut(s) 42
AcsI RAATTY 2 cut(s) 322, 1270
AcuI CTGAAG 4 cut(s) 111, 519, 914, 983
AdeI CACNNNGTG 1 cut(s) 847
AfaI GTAC 4 cut(s) 173, 1121, 1256, 1560
AflII CTTAAG 2 cut(s) 227, 311
AflIII ACRYGT 1 cut(s) 1630
AgsI TTSAA 6 cut(s) 428, 529, 952, 976, 1090, 1567
AjiI CACGTC 1 cut(s) 1633
Alw21I GWGCWC 3 cut(s) 729, 913, 1376
Alw26I GTCTC 1 cut(s) 1223
Alw44I GTGCAC 1 cut(s) 1372
AlwNI CAGNNNCTG 1 cut(s) 541
Ama87I CYCGRG 5 cut(s) 317, 728, 1025, 1112, 1646
Aor13HI TCCGGA 1 cut(s) 249
AoxI GGCC 2 cut(s) 42, 1672
ApaLI GTGCAC 1 cut(s) 1372
ApeKI GCWGC 2 cut(s) 617, 1550
ApoI RAATTY 2 cut(s) 322, 1270
ArsI GACNNNNNNTTYG 2 cut(s) 1634, 1666
AspS9I GGNCC 1 cut(s) 1623
AsuC2I CCSGG 2 cut(s) 162, 1446
AsuHPI GGTGA 2 cut(s) 674, 1447
AsuII TTCGAA 1 cut(s) 326
AvaI CYCGRG 5 cut(s) 317, 728, 1025, 1112, 1646
AvaII GGWCC 1 cut(s) 1623
BaeGI GKGCMC 1 cut(s) 1376
BaeI ACNNNNGTAYC 2 cut(s) 374, 407
BamHI GGATCC 2 cut(s) 220, 733
BanII GRGCYC 3 cut(s) 729, 913, 1420
Bbv12I GWGCWC 3 cut(s) 729, 913, 1376
BbvI GCAGC 2 cut(s) 604, 1537
BccI CCATC 3 cut(s) 407, 658, 1199
BceAI ACGGC 1 cut(s) 808
BcgI CGANNNNNNTGC 2 cut(s) 622, 656
BciVI GTATCC 1 cut(s) 1131
BclI TGATCA 3 cut(s) 265, 1287, 1452
BcnI CCSGG 2 cut(s) 162, 1446
BcoDI GTCTC 1 cut(s) 1223
BfaI CTAG 1 cut(s) 192
BfmI CTRYAG 2 cut(s) 1224, 1551
BfrI CTTAAG 2 cut(s) 227, 311
BfuAI ACCTGC 1 cut(s) 868
BfuI GTATCC 1 cut(s) 1131
BisI GCNGC 6 cut(s) 28, 31, 618, 780, 1478, 1551
BlsI GCNGC 6 cut(s) 29, 32, 619, 781, 1479, 1552
BmcAI AGTACT 1 cut(s) 173
Bme1390I CCNGG 2 cut(s) 162, 1446
Bme18I GGWCC 1 cut(s) 1623
BmeT110I CYCGRG 5 cut(s) 317, 728, 1025, 1112, 1646
BmgBI CACGTC 1 cut(s) 1633
BmgT120I GGNCC 1 cut(s) 1623
BmiI GGNNCC 5 cut(s) 222, 418, 735, 822, 1067
BmrFI CCNGG 2 cut(s) 162, 1446
BmrI ACTGGG 1 cut(s) 1439
BmsI GCATC 1 cut(s) 1342
BmuI ACTGGG 1 cut(s) 1439
BplI GAGNNNNNCTC 2 cut(s) 664, 696
Bpu10I CCTNAGC 2 cut(s) 440, 816
Bpu14I TTCGAA 1 cut(s) 326
BpuEI CTTGAG 1 cut(s) 1117
BpuMI CCSGG 2 cut(s) 162, 1446
Bsa29I ATCGAT 1 cut(s) 626
BsaBI GATNNNNATC 3 cut(s) 245, 267, 738
BsaJI CCNNGG 4 cut(s) 233, 719, 824, 1583
BsaWI WCCGGW 1 cut(s) 249
BsaXI ACNNNNNCTCC 2 cut(s) 900, 930
Bse1I ACTGG 3 cut(s) 1397, 1434, 1606
Bse8I GATNNNNATC 3 cut(s) 245, 267, 738
BseAI TCCGGA 1 cut(s) 249
BseCI ATCGAT 1 cut(s) 626
BseDI CCNNGG 4 cut(s) 233, 719, 824, 1583
BseGI GGATG 3 cut(s) 1210, 1279, 1540
BseJI GATNNNNATC 3 cut(s) 245, 267, 738
BseMII CTCAG 1 cut(s) 678
BseNI ACTGG 3 cut(s) 1397, 1434, 1606
BseSI GKGCMC 1 cut(s) 1376
BseXI GCAGC 2 cut(s) 604, 1537
BseYI CCCAGC 1 cut(s) 1507
BsgI GTGCAG 1 cut(s) 1187
Bsh1236I CGCG 3 cut(s) 27, 302, 721
BshFI GGCC 2 cut(s) 44, 1674
BshVI ATCGAT 1 cut(s) 626
BsiHKAI GWGCWC 3 cut(s) 729, 913, 1376
BsiHKCI CYCGRG 5 cut(s) 317, 728, 1025, 1112, 1646
BsiSI CCGG 4 cut(s) 41, 162, 250, 1445
BslFI GGGAC 2 cut(s) 1447, 1461
BsmAI GTCTC 1 cut(s) 1223
BsmFI GGGAC 2 cut(s) 1447, 1461
BsmI GAATGC 2 cut(s) 817, 1036
BsnI GGCC 2 cut(s) 44, 1674
BsoBI CYCGRG 5 cut(s) 317, 728, 1025, 1112, 1646
Bsp119I TTCGAA 1 cut(s) 326
Bsp1286I GDGCHC 4 cut(s) 729, 913, 1376, 1420
Bsp13I TCCGGA 1 cut(s) 249
Bsp19I CCATGG 1 cut(s) 1583
BspACI CCGC 9 cut(s) 27, 30, 33, 224, 719, 721, 779, 1478, 1543
BspANI GGCC 2 cut(s) 44, 1674
BspCNI CTCAG 1 cut(s) 679
BspDI ATCGAT 1 cut(s) 626
BspEI TCCGGA 1 cut(s) 249
BspFNI CGCG 3 cut(s) 27, 302, 721
BspLI GGNNCC 5 cut(s) 222, 418, 735, 822, 1067
BspMAI CTGCAG 1 cut(s) 1555
BspMI ACCTGC 1 cut(s) 868
BspT104I TTCGAA 1 cut(s) 326
BspTI CTTAAG 2 cut(s) 227, 311
BsrI ACTGG 3 cut(s) 1397, 1434, 1606
BssECI CCNNGG 4 cut(s) 233, 719, 824, 1583
BssNAI GTATAC 1 cut(s) 696
BssT1I CCWWGG 1 cut(s) 1583
Bst1107I GTATAC 1 cut(s) 696
Bst4CI ACNGT 4 cut(s) 237, 573, 1143, 1571
Bst6I CTCTTC 5 cut(s) 101, 107, 663, 961, 1357
BstAFI CTTAAG 2 cut(s) 227, 311
BstBI TTCGAA 1 cut(s) 326
BstC8I GCNNGC 1 cut(s) 1663
BstDEI CTNAG 4 cut(s) 440, 585, 687, 816
BstDSI CCRYGG 4 cut(s) 233, 719, 824, 1583
BstF5I GGATG 3 cut(s) 1210, 1279, 1540
BstFNI CGCG 3 cut(s) 27, 302, 721
BstMAI GTCTC 1 cut(s) 1223
BstMWI GCNNNNNNNGC 3 cut(s) 299, 829, 1671
BstNSI RCATGY 3 cut(s) 836, 1317, 1499
BstSCI CCNGG 2 cut(s) 160, 1444
BstSFI CTRYAG 2 cut(s) 1224, 1551
BstSLI GKGCMC 1 cut(s) 1376
BstUI CGCG 3 cut(s) 27, 302, 721
BstV1I GCAGC 2 cut(s) 604, 1537
BstX2I RGATCY 9 cut(s) 35, 188, 197, 220, 246, 339, 370, 733, 1539
BstYI RGATCY 9 cut(s) 35, 188, 197, 220, 246, 339, 370, 733, 1539
BstZ17I GTATAC 1 cut(s) 696
Bsu15I ATCGAT 1 cut(s) 626
BsuI GTATCC 1 cut(s) 1131
BsuRI GGCC 2 cut(s) 44, 1674
BsuTUI ATCGAT 1 cut(s) 626
BtgI CCRYGG 4 cut(s) 233, 719, 824, 1583
BtrI CACGTC 1 cut(s) 1633
BtsCI GGATG 3 cut(s) 1210, 1279, 1540
BtsI GCAGTG 1 cut(s) 1560
BtsIMutI CAGTG 1 cut(s) 1560
BveI ACCTGC 1 cut(s) 868
Cac8I GCNNGC 1 cut(s) 1663
CaiI CAGNNNCTG 1 cut(s) 541
Cfr13I GGNCC 1 cut(s) 1623
Cfr42I CCGCGG 1 cut(s) 722
ClaI ATCGAT 1 cut(s) 626
Csp6I GTAC 4 cut(s) 172, 1120, 1255, 1559
CviQI GTAC 4 cut(s) 172, 1120, 1255, 1559
DdeI CTNAG 4 cut(s) 440, 585, 687, 816
DraI TTTAAA 1 cut(s) 889
DraIII CACNNNGTG 1 cut(s) 847
EaeI YGGCCR 1 cut(s) 42
Eam1104I CTCTTC 5 cut(s) 101, 107, 663, 961, 1357
EarI CTCTTC 5 cut(s) 101, 107, 663, 961, 1357
EciI GGCGGA 1 cut(s) 48
Ecl136II GAGCTC 2 cut(s) 727, 911
Eco130I CCWWGG 1 cut(s) 1583
Eco24I GRGCYC 3 cut(s) 729, 913, 1420
Eco32I GATATC 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 1623
Eco53kI GAGCTC 2 cut(s) 727, 911
Eco57I CTGAAG 4 cut(s) 111, 519, 914, 983
Eco88I CYCGRG 5 cut(s) 317, 728, 1025, 1112, 1646
EcoICRI GAGCTC 2 cut(s) 727, 911
EcoRI GAATTC 1 cut(s) 322
EcoRV GATATC 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 1583
EcoT38I GRGCYC 3 cut(s) 729, 913, 1420
ErhI CCWWGG 1 cut(s) 1583
FaqI GGGAC 2 cut(s) 1447, 1461
FauI CCCGC 1 cut(s) 714
FbaI TGATCA 3 cut(s) 265, 1287, 1452
FblI GTMKAC 2 cut(s) 695, 1635
Fnu4HI GCNGC 6 cut(s) 28, 31, 618, 780, 1478, 1551
FokI GGATG 3 cut(s) 1217, 1266, 1547
FriOI GRGCYC 3 cut(s) 729, 913, 1420
Fsp4HI GCNGC 6 cut(s) 28, 31, 618, 780, 1478, 1551
FspBI CTAG 1 cut(s) 192
GluI GCNGC 6 cut(s) 28, 31, 618, 780, 1478, 1551
GsaI CCCAGC 1 cut(s) 1511
HaeIII GGCC 2 cut(s) 44, 1674
HapII CCGG 4 cut(s) 41, 162, 250, 1445
HincII GTYRAC 3 cut(s) 565, 576, 1636
HindII GTYRAC 3 cut(s) 565, 576, 1636
HindIII AAGCTT 1 cut(s) 308
HpaI GTTAAC 2 cut(s) 565, 576
HpaII CCGG 4 cut(s) 41, 162, 250, 1445
HphI GGTGA 2 cut(s) 674, 1447
Hpy166II GTNNAC 7 cut(s) 565, 576, 696, 796, 1374, 1561, 1636
Hpy188III TCNNGA 9 cut(s) 146, 192, 250, 319, 337, 1015, 1027, 1063, 1349
Hpy8I GTNNAC 7 cut(s) 565, 576, 696, 796, 1374, 1561, 1636
Hpy99I CGWCG 3 cut(s) 391, 1039, 1637
HpyAV CCTTC 5 cut(s) 124, 164, 698, 889, 1165
HpyCH4III ACNGT 4 cut(s) 237, 573, 1143, 1571
HpyCH4IV ACGT 5 cut(s) 389, 843, 944, 1436, 1632
HpyCH4V TGCA 6 cut(s) 643, 877, 1168, 1374, 1553, 1665
HpyF10VI GCNNNNNNNGC 3 cut(s) 299, 829, 1671
HpyF3I CTNAG 4 cut(s) 440, 585, 687, 816
HpySE526I ACGT 5 cut(s) 389, 843, 944, 1436, 1632
Kpn2I TCCGGA 1 cut(s) 249
Ksp22I TGATCA 3 cut(s) 265, 1287, 1452
KspAI GTTAAC 2 cut(s) 565, 576
KspI CCGCGG 1 cut(s) 722
LmnI GCTCC 6 cut(s) 416, 724, 820, 869, 908, 1220
Lsp1109I GCAGC 2 cut(s) 604, 1537
LweI GCATC 1 cut(s) 1342
MaeI CTAG 1 cut(s) 192
MaeII ACGT 5 cut(s) 389, 843, 944, 1436, 1632
MaeIII GTNAC 4 cut(s) 847, 1437, 1511, 1571
MflI RGATCY 9 cut(s) 35, 188, 197, 220, 246, 339, 370, 733, 1539
MhlI GDGCHC 4 cut(s) 729, 913, 1376, 1420
MluCI AATT 5 cut(s) 322, 361, 446, 1270, 1666
MlyI GAGTC 3 cut(s) 192, 475, 518
MmeI TCCRAC 2 cut(s) 166, 186
MnlI CCTC 9 cut(s) 110, 351, 430, 651, 666, 724, 928, 1092, 1655
MroI TCCGGA 1 cut(s) 249
MslI CAYNNNNRTG 4 cut(s) 1052, 1318, 1529, 1598
MspA1I CMGCKG 2 cut(s) 721, 1480
MspCI CTTAAG 2 cut(s) 227, 311
MspI CCGG 4 cut(s) 41, 162, 250, 1445
MspR9I CCNGG 2 cut(s) 162, 1446
MssI GTTTAAAC 1 cut(s) 889
Mva1269I GAATGC 2 cut(s) 817, 1036
MvnI CGCG 3 cut(s) 27, 302, 721
MwoI GCNNNNNNNGC 3 cut(s) 299, 829, 1671
NciI CCSGG 2 cut(s) 162, 1446
NcoI CCATGG 1 cut(s) 1583
NlaIV GGNNCC 5 cut(s) 222, 418, 735, 822, 1067
NmuCI GTSAC 1 cut(s) 847
NspI RCATGY 3 cut(s) 836, 1317, 1499
NspV TTCGAA 1 cut(s) 326
PaeR7I CTCGAG 4 cut(s) 317, 728, 1025, 1646
PcsI WCGNNNNNNNCGW 1 cut(s) 564
PctI GAATGC 2 cut(s) 817, 1036
PkrI GCNGC 6 cut(s) 29, 32, 619, 781, 1479, 1552
PleI GAGTC 3 cut(s) 191, 475, 517
PmeI GTTTAAAC 1 cut(s) 889
PpsI GAGTC 3 cut(s) 191, 475, 517
Psp124BI GAGCTC 2 cut(s) 729, 913
PspFI CCCAGC 1 cut(s) 1507
PspN4I GGNNCC 5 cut(s) 222, 418, 735, 822, 1067
PspPI GGNCC 1 cut(s) 1623
PspXI VCTCGAGB 2 cut(s) 728, 1646
PstI CTGCAG 1 cut(s) 1555
PstNI CAGNNNCTG 1 cut(s) 541
PsuI RGATCY 9 cut(s) 35, 188, 197, 220, 246, 339, 370, 733, 1539
RsaI GTAC 4 cut(s) 173, 1121, 1256, 1560
RsaNI GTAC 4 cut(s) 172, 1120, 1255, 1559
RseI CAYNNNNRTG 4 cut(s) 1052, 1318, 1529, 1598
SacI GAGCTC 2 cut(s) 729, 913
SacII CCGCGG 1 cut(s) 722
SalI GTCGAC 1 cut(s) 1634
SatI GCNGC 6 cut(s) 28, 31, 618, 780, 1478, 1551
Sau96I GGNCC 1 cut(s) 1623
ScaI AGTACT 1 cut(s) 173
SchI GAGTC 3 cut(s) 192, 475, 518
ScrFI CCNGG 2 cut(s) 162, 1446
SduI GDGCHC 4 cut(s) 729, 913, 1376, 1420
SfaNI GCATC 1 cut(s) 1342
SfcI CTRYAG 2 cut(s) 1224, 1551
Sfr274I CTCGAG 4 cut(s) 317, 728, 1025, 1646
Sfr303I CCGCGG 1 cut(s) 722
SfuI TTCGAA 1 cut(s) 326
SgrBI CCGCGG 1 cut(s) 722
SinI GGWCC 1 cut(s) 1623
SlaI CTCGAG 4 cut(s) 317, 728, 1025, 1646
SmiMI CAYNNNNRTG 4 cut(s) 1052, 1318, 1529, 1598
SmlI CTYRAG 7 cut(s) 227, 311, 317, 728, 1025, 1096, 1646
SmoI CTYRAG 7 cut(s) 227, 311, 317, 728, 1025, 1096, 1646
Sse9I AATT 5 cut(s) 322, 361, 446, 1270, 1666
SsiI CCGC 9 cut(s) 27, 30, 33, 224, 719, 721, 779, 1478, 1543
SspMI CTAG 1 cut(s) 192
SstI GAGCTC 2 cut(s) 729, 913
StyD4I CCNGG 2 cut(s) 160, 1444
StyI CCWWGG 1 cut(s) 1583
TaaI ACNGT 4 cut(s) 237, 573, 1143, 1571
TaiI ACGT 5 cut(s) 392, 846, 947, 1439, 1635
TaqII GACCGA 1 cut(s) 261
TasI AATT 5 cut(s) 322, 361, 446, 1270, 1666
TatI WGTACW 1 cut(s) 171
TauI GCSGC 4 cut(s) 30, 33, 782, 1480
TscAI CASTG 1 cut(s) 1560
TseFI GTSAC 1 cut(s) 847
TseI GCWGC 2 cut(s) 617, 1550
Tsp45I GTSAC 1 cut(s) 847
TspDTI ATGAA 8 cut(s) 717, 875, 1070, 1238, 1283, 1349, 1592, 1616
TspGWI ACGGA 2 cut(s) 383, 484
TspRI CASTG 1 cut(s) 1560
Vha464I CTTAAG 2 cut(s) 227, 311
VneI GTGCAC 1 cut(s) 1372
VpaK11BI GGWCC 1 cut(s) 1623
XapI RAATTY 2 cut(s) 322, 1270
XbaI TCTAGA 1 cut(s) 191
XceI RCATGY 3 cut(s) 836, 1317, 1499
XcmI CCANNNNNNNNNTGG 1 cut(s) 1477
XhoI CTCGAG 4 cut(s) 317, 728, 1025, 1646
XmiI GTMKAC 2 cut(s) 695, 1635
XspI CTAG 1 cut(s) 192
ZrmI AGTACT 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.