FvH4_2g18470

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
15841868 .. 15844754
2887 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g18470.t2

Sequence Viewer

Length: 1305 bp
ATGAACAAGCCGTCGTACCGGGCTCTTTTCGAGTCCGATGGGCTCTCCATTGATGAATCGGTGTTGCGGCAGTTCGAGAAGGAAGTGAAGGAGCGGATTAAGGTCACTAGGCAAGTGATCGCCGAGGCGAAAGAGTCTTTCGATAACCAGCTCAAGATTCAGAAGCTGAAAGATACTATTTTTCAAGTGAATGAGCAGCTGACCAAGGCCAAGAAGCAGGGGGCTTTCTCCAGCTTGATTGCCGCCAAGTCGATCCCCAAAAGCTTGCATTGTGTGGCAATGCGGTTGATGGAGGAGCGGATTGCGCATCCGGAGAAGTATACGGATGAAGGGAAGCCGACGCCGCCGGAGTTGGAGGATCCGAGTTTGTACCATTATGCTATATTTTCGGATAATGTAATTGCCGCGTCTGTGGTGGTGAATTCGGCAGTGAAAAATGCCAAGGAGCCTTGGAAGCATGTGTTCCATGTGGTGACTGATAAGATGAATCTTGGAGCGATGCAGGTTATGTTCAAGTTGAAGGAGTACAATGGGGCAAGAGTTGAGGTGAAGGCTGTGGAGGATTACAAGTTCTTGAATTCTTCGTATGTGCCGGTGCTTAAGCAATTAGAGAATGCAAAGTTGCAACAGTTTTACTTTGAGAATAAGCTCGAGAATGCAACCAAAGACACAACAAACATGAAGTTTAGGAACCCTAAGTATTTGTCCATATTGAACCACTTGAGGTTTTATTTGCCTGAAATGTATCCAAAGTTGAACAGAATTCTGTTTTTGGATGATGATATCGTGGTTCAAAAGGACTTAACTGGGTTGTGGAAGATTGATATGGATGGGAAGGTGAATGGGGCGGTTGAGACATGTTTTGGGTCCTTCCATCGTTATGCACAGTACATGAATTTCTCACACCCATTGATCAAGGAGAAGTTTAATCCCAATGCCTGCGCTTGGGCTTATGGAATGAATTTCTTTGATTTGGATGCTTGGCGAAGGGTGAACTGCACAGCGGATTATCACTACTGGCAGAATCTGAACGAGAATCGTACCTTGTGGAAATTGGGGACTTTACCCCCAGGTTTGATCACATTTTACTCAACTACAAAGCCACTGGACAAGTCATGGCATGTTCTGGGACTTGGCTATAACCCAAGCATCAGCATGGATGAGATTCGCAATGCTGCAGTCGTGCACTTTAATGGGAATATGAAGCCTTGGCTTGATATTGCCATGAACCAGTTCAAGCCAATCTGGGAGAAACATGTGGATTATGATTTAGAGTTTGTTCAGGGCTGCAACTTCGGGATGTAA

Protein Analysis

435

Amino Acids

50.42

Weight (kDa)

8.5

Isoelectric Point (pI)

25.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 219 - 536 1.2e-82 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013200)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 306
Acc36I ACCTGC 1 cut(s) 493
AccBSI CCGCTC 2 cut(s) 94, 298
AccI GTMKAC 1 cut(s) 320
AccII CGCG 1 cut(s) 407
AccIII TCCGGA 1 cut(s) 310
AciI CCGC 9 cut(s) 67, 94, 243, 283, 298, 344, 405, 848, 1004
AclWI GGATC 3 cut(s) 247, 353, 366
AcsI RAATTY 5 cut(s) 421, 577, 762, 895, 961
AcyI GRCGYC 1 cut(s) 341
AfaI GTAC 5 cut(s) 17, 371, 527, 890, 1042
AfiI CCNNNNNNNGG 1 cut(s) 945
AflII CTTAAG 1 cut(s) 599
AflIII ACRYGT 2 cut(s) 857, 1255
AgsI TTSAA 8 cut(s) 185, 514, 520, 577, 715, 757, 794, 1237
AjnI CCWGG 1 cut(s) 1069
AloI GAACNNNNNNTCC 2 cut(s) 554, 586
AluBI AGCT 6 cut(s) 151, 166, 199, 234, 264, 649
AluI AGCT 6 cut(s) 151, 166, 199, 234, 264, 649
Alw21I GWGCWC 1 cut(s) 1188
Alw26I GTCTC 1 cut(s) 848
Alw44I GTGCAC 1 cut(s) 1184
AlwI GGATC 3 cut(s) 247, 353, 366
AlwNI CAGNNNCTG 2 cut(s) 166, 1027
Ama87I CYCGRG 1 cut(s) 650
Aor13HI TCCGGA 1 cut(s) 310
AoxI GGCC 1 cut(s) 207
ApaLI GTGCAC 1 cut(s) 1184
ApeKI GCWGC 3 cut(s) 196, 1175, 1287
ApoI RAATTY 5 cut(s) 421, 577, 762, 895, 961
Asp700I GAANNNNTTC 1 cut(s) 1232
AspLEI GCGC 2 cut(s) 307, 944
AspS9I GGNCC 1 cut(s) 867
AsuC2I CCSGG 1 cut(s) 20
AsuHPI GGTGA 5 cut(s) 430, 484, 559, 850, 1003
AvaI CYCGRG 1 cut(s) 650
AvaII GGWCC 1 cut(s) 867
BaeGI GKGCMC 1 cut(s) 1188
BamHI GGATCC 1 cut(s) 358
BanII GRGCYC 2 cut(s) 25, 45
Bbv12I GWGCWC 1 cut(s) 1188
BbvI GCAGC 3 cut(s) 208, 1162, 1274
BccI CCATC 4 cut(s) 32, 283, 824, 882
BciT130I CCWGG 1 cut(s) 1071
BciVI GTATCC 1 cut(s) 756
BclI TGATCA 2 cut(s) 912, 1077
BcnI CCSGG 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 848
BfaI CTAG 1 cut(s) 108
BfmI CTRYAG 1 cut(s) 1176
BfrI CTTAAG 1 cut(s) 599
BfuAI ACCTGC 1 cut(s) 493
BfuI GTATCC 1 cut(s) 756
BisI GCNGC 7 cut(s) 68, 197, 243, 344, 405, 1176, 1288
BlsI GCNGC 7 cut(s) 69, 198, 244, 345, 406, 1177, 1289
Bme1390I CCNGG 2 cut(s) 20, 1071
Bme18I GGWCC 1 cut(s) 867
BmeT110I CYCGRG 1 cut(s) 650
BmgT120I GGNCC 1 cut(s) 867
BmiI GGNNCC 4 cut(s) 360, 447, 692, 868
BmrFI CCNGG 2 cut(s) 20, 1071
BmrI ACTGGG 1 cut(s) 816
BmsI GCATC 4 cut(s) 316, 489, 967, 1158
BmuI ACTGGG 1 cut(s) 816
BpmI CTGGAG 1 cut(s) 214
BpuEI CTTGAG 2 cut(s) 137, 742
BpuMI CCSGG 1 cut(s) 20
BsaHI GRCGYC 1 cut(s) 341
BsaJI CCNNGG 6 cut(s) 123, 204, 441, 449, 1069, 1208
BsaWI WCCGGW 1 cut(s) 310
Bsc4I CCNNNNNNNGG 1 cut(s) 945
Bse118I RCCGGY 1 cut(s) 592
Bse1I ACTGG 4 cut(s) 811, 1022, 1110, 1231
Bse3DI GCAATG 2 cut(s) 285, 1177
BseAI TCCGGA 1 cut(s) 310
BseBI CCWGG 1 cut(s) 1071
BseDI CCNNGG 6 cut(s) 123, 204, 441, 449, 1069, 1208
BseGI GGATG 7 cut(s) 307, 331, 781, 835, 982, 1165, 1305
BseLI CCNNNNNNNGG 1 cut(s) 945
BseMI GCAATG 2 cut(s) 285, 1177
BseNI ACTGG 4 cut(s) 811, 1022, 1110, 1231
BseRI GAGGAG 1 cut(s) 308
BseSI GKGCMC 1 cut(s) 1188
BseXI GCAGC 3 cut(s) 208, 1162, 1274
BsgI GTGCAG 1 cut(s) 982
Bsh1236I CGCG 1 cut(s) 407
BshFI GGCC 1 cut(s) 209
BsiHKAI GWGCWC 1 cut(s) 1188
BsiHKCI CYCGRG 1 cut(s) 650
BsiSI CCGG 4 cut(s) 19, 311, 347, 593
BslFI GGGAC 2 cut(s) 1072, 1143
BslI CCNNNNNNNGG 1 cut(s) 945
BsmAI GTCTC 1 cut(s) 848
BsmFI GGGAC 2 cut(s) 1072, 1143
BsmI GAATGC 2 cut(s) 619, 661
BsnI GGCC 1 cut(s) 209
BsoBI CYCGRG 1 cut(s) 650
Bsp1286I GDGCHC 3 cut(s) 25, 45, 1188
Bsp13I TCCGGA 1 cut(s) 310
Bsp143I GATC 5 cut(s) 117, 252, 358, 912, 1077
BspACI CCGC 9 cut(s) 67, 94, 243, 283, 298, 344, 405, 848, 1004
BspANI GGCC 1 cut(s) 209
BspEI TCCGGA 1 cut(s) 310
BspFNI CGCG 1 cut(s) 407
BspLI GGNNCC 4 cut(s) 360, 447, 692, 868
BspMAI CTGCAG 1 cut(s) 1180
BspMI ACCTGC 1 cut(s) 493
BspPI GGATC 3 cut(s) 247, 353, 366
BspTI CTTAAG 1 cut(s) 599
BsrBI CCGCTC 2 cut(s) 94, 298
BsrDI GCAATG 2 cut(s) 285, 1177
BsrFI RCCGGY 1 cut(s) 592
BsrI ACTGG 4 cut(s) 811, 1022, 1110, 1231
BssAI RCCGGY 1 cut(s) 592
BssECI CCNNGG 6 cut(s) 123, 204, 441, 449, 1069, 1208
BssMI GATC 5 cut(s) 117, 252, 358, 912, 1077
BssNAI GTATAC 1 cut(s) 321
BssNI GRCGYC 1 cut(s) 341
BssT1I CCWWGG 4 cut(s) 204, 441, 449, 1208
Bst1107I GTATAC 1 cut(s) 321
Bst2UI CCWGG 1 cut(s) 1071
Bst4CI ACNGT 2 cut(s) 630, 888
BstACI GRCGYC 1 cut(s) 341
BstAFI CTTAAG 1 cut(s) 599
BstC8I GCNNGC 2 cut(s) 266, 940
BstDEI CTNAG 1 cut(s) 696
BstF5I GGATG 7 cut(s) 307, 331, 781, 835, 982, 1165, 1305
BstFNI CGCG 1 cut(s) 407
BstHHI GCGC 2 cut(s) 307, 944
BstKTI GATC 5 cut(s) 120, 255, 361, 915, 1080
BstMAI GTCTC 1 cut(s) 848
BstMBI GATC 5 cut(s) 117, 252, 358, 912, 1077
BstMWI GCNNNNNNNGC 3 cut(s) 304, 343, 454
BstNI CCWGG 1 cut(s) 1071
BstNSI RCATGY 4 cut(s) 461, 861, 1124, 1259
BstSCI CCNGG 2 cut(s) 18, 1069
BstSFI CTRYAG 1 cut(s) 1176
BstSLI GKGCMC 1 cut(s) 1188
BstUI CGCG 1 cut(s) 407
BstV1I GCAGC 3 cut(s) 208, 1162, 1274
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BstZ17I GTATAC 1 cut(s) 321
BsuI GTATCC 1 cut(s) 756
BsuRI GGCC 1 cut(s) 209
BtgZI GCGATG 1 cut(s) 512
BtsCI GGATG 7 cut(s) 307, 331, 781, 835, 982, 1165, 1305
BtsI GCAGTG 1 cut(s) 435
BtsIMutI CAGTG 2 cut(s) 435, 1103
BveI ACCTGC 1 cut(s) 493
Cac8I GCNNGC 2 cut(s) 266, 940
CaiI CAGNNNCTG 2 cut(s) 166, 1027
CfoI GCGC 2 cut(s) 307, 944
Cfr10I RCCGGY 1 cut(s) 592
Cfr13I GGNCC 1 cut(s) 867
CseI GACGC 2 cut(s) 349, 396
Csp6I GTAC 5 cut(s) 16, 370, 526, 889, 1041
CviQI GTAC 5 cut(s) 16, 370, 526, 889, 1041
DdeI CTNAG 1 cut(s) 696
DpnI GATC 5 cut(s) 119, 254, 360, 914, 1079
DpnII GATC 5 cut(s) 117, 252, 358, 912, 1077
Eco130I CCWWGG 4 cut(s) 204, 441, 449, 1208
Eco24I GRGCYC 2 cut(s) 25, 45
Eco32I GATATC 1 cut(s) 784
Eco47I GGWCC 1 cut(s) 867
Eco88I CYCGRG 1 cut(s) 650
EcoO109I RGGNCCY 1 cut(s) 867
EcoRI GAATTC 3 cut(s) 421, 577, 762
EcoRII CCWGG 1 cut(s) 1069
EcoRV GATATC 1 cut(s) 784
EcoT14I CCWWGG 4 cut(s) 204, 441, 449, 1208
EcoT38I GRGCYC 2 cut(s) 25, 45
ErhI CCWWGG 4 cut(s) 204, 441, 449, 1208
FaqI GGGAC 2 cut(s) 1072, 1143
FbaI TGATCA 2 cut(s) 912, 1077
FblI GTMKAC 1 cut(s) 320
Fnu4HI GCNGC 7 cut(s) 68, 197, 243, 344, 405, 1176, 1288
FokI GGATG 6 cut(s) 294, 338, 788, 842, 989, 1172
FriOI GRGCYC 2 cut(s) 25, 45
Fsp4HI GCNGC 7 cut(s) 68, 197, 243, 344, 405, 1176, 1288
FspBI CTAG 1 cut(s) 108
FspI TGCGCA 1 cut(s) 306
GlaI GCGC 2 cut(s) 306, 943
GluI GCNGC 7 cut(s) 68, 197, 243, 344, 405, 1176, 1288
GsuI CTGGAG 1 cut(s) 214
HaeIII GGCC 1 cut(s) 209
HapII CCGG 4 cut(s) 19, 311, 347, 593
HgaI GACGC 2 cut(s) 349, 396
HhaI GCGC 2 cut(s) 307, 944
Hin1I GRCGYC 1 cut(s) 341
Hin6I GCGC 2 cut(s) 305, 942
HinP1I GCGC 2 cut(s) 305, 942
HindIII AAGCTT 1 cut(s) 262
HinfI GANTC 8 cut(s) 32, 56, 134, 157, 487, 1024, 1036, 1165
HpaII CCGG 4 cut(s) 19, 311, 347, 593
HphI GGTGA 5 cut(s) 430, 484, 559, 850, 1003
Hpy166II GTNNAC 3 cut(s) 321, 994, 1186
Hpy188I TCNGA 5 cut(s) 37, 162, 363, 391, 1029
Hpy188III TCNNGA 6 cut(s) 76, 154, 311, 574, 652, 1297
Hpy8I GTNNAC 3 cut(s) 321, 994, 1186
Hpy99I CGWCG 2 cut(s) 16, 343
HpyAV CCTTC 8 cut(s) 73, 82, 323, 514, 544, 829, 880, 981
HpyCH4III ACNGT 2 cut(s) 630, 888
HpyF10VI GCNNNNNNNGC 3 cut(s) 304, 343, 454
HpyF3I CTNAG 1 cut(s) 696
Hsp92I GRCGYC 1 cut(s) 341
HspAI GCGC 2 cut(s) 305, 942
Kpn2I TCCGGA 1 cut(s) 310
Ksp22I TGATCA 2 cut(s) 912, 1077
Kzo9I GATC 5 cut(s) 117, 252, 358, 912, 1077
LmnI GCTCC 4 cut(s) 91, 295, 445, 494
Lsp1109I GCAGC 3 cut(s) 208, 1162, 1274
LweI GCATC 4 cut(s) 316, 489, 967, 1158
MaeI CTAG 1 cut(s) 108
MaeIII GTNAC 2 cut(s) 103, 472
MalI GATC 5 cut(s) 119, 254, 360, 914, 1079
MbiI CCGCTC 2 cut(s) 94, 298
MboI GATC 5 cut(s) 117, 252, 358, 912, 1077
MboII GAAGA 2 cut(s) 573, 829
MflI RGATCY 1 cut(s) 358
MhlI GDGCHC 3 cut(s) 25, 45, 1188
MluCI AATT 8 cut(s) 399, 421, 577, 605, 762, 895, 961, 1052
MlyI GAGTC 2 cut(s) 41, 143
MmeI TCCRAC 1 cut(s) 333
MnlI CCTC 6 cut(s) 118, 286, 349, 538, 553, 717
MroI TCCGGA 1 cut(s) 310
MroXI GAANNNNTTC 1 cut(s) 1232
MseI TTAA 5 cut(s) 99, 600, 803, 927, 1191
MslI CAYNNNNRTG 3 cut(s) 879, 1154, 1191
MspA1I CMGCKG 2 cut(s) 199, 1004
MspCI CTTAAG 1 cut(s) 599
MspI CCGG 4 cut(s) 19, 311, 347, 593
MspR9I CCNGG 2 cut(s) 20, 1071
Mva1269I GAATGC 2 cut(s) 619, 661
MvaI CCWGG 1 cut(s) 1071
MvnI CGCG 1 cut(s) 407
MwoI GCNNNNNNNGC 3 cut(s) 304, 343, 454
NciI CCSGG 1 cut(s) 20
NdeII GATC 5 cut(s) 117, 252, 358, 912, 1077
NlaIV GGNNCC 4 cut(s) 360, 447, 692, 868
NmeAIII GCCGAG 1 cut(s) 148
NmuCI GTSAC 2 cut(s) 103, 472
NsbI TGCGCA 1 cut(s) 306
NspI RCATGY 4 cut(s) 461, 861, 1124, 1259
PaeR7I CTCGAG 1 cut(s) 650
PciI ACATGT 2 cut(s) 857, 1255
PctI GAATGC 2 cut(s) 619, 661
PdmI GAANNNNTTC 1 cut(s) 1232
PfeI GAWTC 6 cut(s) 56, 157, 487, 1024, 1036, 1165
PkrI GCNGC 7 cut(s) 69, 198, 244, 345, 406, 1177, 1289
PleI GAGTC 2 cut(s) 40, 142
PpsI GAGTC 2 cut(s) 40, 142
PpuMI RGGWCCY 1 cut(s) 867
PscI ACATGT 2 cut(s) 857, 1255
Psp5II RGGWCCY 1 cut(s) 867
Psp6I CCWGG 1 cut(s) 1069
PspGI CCWGG 1 cut(s) 1069
PspN4I GGNNCC 4 cut(s) 360, 447, 692, 868
PspPI GGNCC 1 cut(s) 867
PspPPI RGGWCCY 1 cut(s) 867
PstI CTGCAG 1 cut(s) 1180
PstNI CAGNNNCTG 2 cut(s) 166, 1027
PsuI RGATCY 1 cut(s) 358
PvuII CAGCTG 1 cut(s) 199
RsaI GTAC 5 cut(s) 17, 371, 527, 890, 1042
RsaNI GTAC 5 cut(s) 16, 370, 526, 889, 1041
RseI CAYNNNNRTG 3 cut(s) 879, 1154, 1191
SaqAI TTAA 5 cut(s) 99, 600, 803, 927, 1191
SatI GCNGC 7 cut(s) 68, 197, 243, 344, 405, 1176, 1288
Sau3AI GATC 5 cut(s) 117, 252, 358, 912, 1077
Sau96I GGNCC 1 cut(s) 867
SchI GAGTC 2 cut(s) 41, 143
ScrFI CCNGG 2 cut(s) 20, 1071
SduI GDGCHC 3 cut(s) 25, 45, 1188
SfaNI GCATC 4 cut(s) 316, 489, 967, 1158
SfcI CTRYAG 1 cut(s) 1176
Sfr274I CTCGAG 1 cut(s) 650
SinI GGWCC 1 cut(s) 867
SlaI CTCGAG 1 cut(s) 650
SmiMI CAYNNNNRTG 3 cut(s) 879, 1154, 1191
SmlI CTYRAG 4 cut(s) 152, 599, 650, 721
SmoI CTYRAG 4 cut(s) 152, 599, 650, 721
Sse9I AATT 8 cut(s) 399, 421, 577, 605, 762, 895, 961, 1052
SsiI CCGC 9 cut(s) 67, 94, 243, 283, 298, 344, 405, 848, 1004
SspMI CTAG 1 cut(s) 108
StyD4I CCNGG 2 cut(s) 18, 1069
StyI CCWWGG 4 cut(s) 204, 441, 449, 1208
TaaI ACNGT 2 cut(s) 630, 888
TaqI TCGA 5 cut(s) 30, 75, 141, 251, 651
TasI AATT 8 cut(s) 399, 421, 577, 605, 762, 895, 961, 1052
TatI WGTACW 2 cut(s) 525, 888
TauI GCSGC 4 cut(s) 70, 245, 346, 407
TfiI GAWTC 6 cut(s) 56, 157, 487, 1024, 1036, 1165
Tru1I TTAA 5 cut(s) 99, 600, 803, 927, 1191
Tru9I TTAA 5 cut(s) 99, 600, 803, 927, 1191
TscAI CASTG 2 cut(s) 435, 1110
TseFI GTSAC 2 cut(s) 103, 472
TseI GCWGC 3 cut(s) 196, 1175, 1287
Tsp45I GTSAC 2 cut(s) 103, 472
TspDTI ATGAA 9 cut(s) 17, 69, 342, 500, 695, 908, 974, 1217, 1241
TspGWI ACGGA 1 cut(s) 338
TspRI CASTG 2 cut(s) 435, 1110
Vha464I CTTAAG 1 cut(s) 599
VneI GTGCAC 1 cut(s) 1184
VpaK11BI GGWCC 1 cut(s) 867
XapI RAATTY 5 cut(s) 421, 577, 762, 895, 961
XceI RCATGY 4 cut(s) 461, 861, 1124, 1259
XhoI CTCGAG 1 cut(s) 650
XmiI GTMKAC 1 cut(s) 320
XmnI GAANNNNTTC 1 cut(s) 1232
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.