leucine-rich repeat protein kinase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Malectin_like | PF12819 | 35 - 357 | 1.1e-120 | Malectin-like domain |
| LRR_8 | PF13855 | 413 - 473 | 6.7e-07 | Leucine rich repeat |
| PK_Tyr_Ser-Thr | PF07714 | 587 - 854 | 7.3e-45 | Protein tyrosine and serine/threonine kinase |
| Pkinase | PF00069 | 588 - 852 | 1.5e-41 | Protein kinase domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2466 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 241 |
| AatII | GACGTC | 1 cut(s) | 648 |
| Acc36I | ACCTGC | 1 cut(s) | 778 |
| AccI | GTMKAC | 4 cut(s) | 512, 2110, 2313, 2575 |
| AccII | CGCG | 3 cut(s) | 422, 632, 1663 |
| AciI | CCGC | 7 cut(s) | 111, 422, 598, 759, 1661, 2076, 2183 |
| AclWI | GGATC | 3 cut(s) | 1163, 2438, 2451 |
| AcsI | RAATTY | 6 cut(s) | 475, 1075, 1296, 1364, 1529, 1627 |
| AcuI | CTGAAG | 2 cut(s) | 96, 1487 |
| AcyI | GRCGYC | 2 cut(s) | 515, 645 |
| AfaI | GTAC | 7 cut(s) | 33, 602, 839, 920, 1587, 2143, 2251 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 155 |
| AflIII | ACRYGT | 5 cut(s) | 486, 507, 834, 1983, 2356 |
| AhlI | ACTAGT | 1 cut(s) | 1588 |
| AjiI | CACGTC | 2 cut(s) | 487, 510 |
| AjnI | CCWGG | 3 cut(s) | 985, 1501, 2254 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 460, 492, 661, 693, 1231, 1263, 1770, 1802 |
| Alw21I | GWGCWC | 3 cut(s) | 787, 810, 2491 |
| Alw26I | GTCTC | 2 cut(s) | 1389, 1700 |
| Alw44I | GTGCAC | 1 cut(s) | 783 |
| AlwI | GGATC | 3 cut(s) | 1163, 2438, 2451 |
| Ama87I | CYCGRG | 1 cut(s) | 2373 |
| AoxI | GGCC | 3 cut(s) | 228, 542, 870 |
| ApaLI | GTGCAC | 1 cut(s) | 783 |
| ApeKI | GCWGC | 2 cut(s) | 761, 1289 |
| ApoI | RAATTY | 6 cut(s) | 475, 1075, 1296, 1364, 1529, 1627 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 116, 148 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 590, 1246, 1488, 1529 |
| AspLEI | GCGC | 2 cut(s) | 398, 2513 |
| AspS9I | GGNCC | 1 cut(s) | 699 |
| AsuHPI | GGTGA | 4 cut(s) | 126, 1025, 1817, 1904 |
| AvaI | CYCGRG | 1 cut(s) | 2373 |
| AvaII | GGWCC | 1 cut(s) | 699 |
| BaeGI | GKGCMC | 1 cut(s) | 787 |
| BamHI | GGATCC | 1 cut(s) | 2443 |
| BanII | GRGCYC | 2 cut(s) | 810, 2491 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 830, 862 |
| BbsI | GAAGAC | 2 cut(s) | 648, 1254 |
| Bbv12I | GWGCWC | 3 cut(s) | 787, 810, 2491 |
| BbvCI | CCTCAGC | 1 cut(s) | 1887 |
| BbvI | GCAGC | 2 cut(s) | 773, 1301 |
| BccI | CCATC | 6 cut(s) | 266, 1061, 1454, 1630, 2113, 2122 |
| BceAI | ACGGC | 3 cut(s) | 133, 1820, 2051 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 730, 764 |
| BciT130I | CCWGG | 3 cut(s) | 987, 1503, 2256 |
| BciVI | GTATCC | 1 cut(s) | 645 |
| BcoDI | GTCTC | 2 cut(s) | 1389, 1700 |
| BcuI | ACTAGT | 1 cut(s) | 1588 |
| BfaI | CTAG | 9 cut(s) | 416, 548, 882, 1370, 1374, 1580, 1589, 2081, 2658 |
| BfmI | CTRYAG | 3 cut(s) | 333, 866, 2314 |
| BfoI | RGCGCY | 1 cut(s) | 399 |
| BfuAI | ACCTGC | 1 cut(s) | 778 |
| BfuI | GTATCC | 1 cut(s) | 645 |
| BglII | AGATCT | 2 cut(s) | 1636, 2201 |
| BisI | GCNGC | 4 cut(s) | 762, 1290, 1661, 2076 |
| BlsI | GCNGC | 4 cut(s) | 763, 1291, 1662, 2077 |
| Bme1390I | CCNGG | 3 cut(s) | 987, 1503, 2256 |
| Bme18I | GGWCC | 1 cut(s) | 699 |
| BmeT110I | CYCGRG | 1 cut(s) | 2373 |
| BmgBI | CACGTC | 2 cut(s) | 487, 510 |
| BmgT120I | GGNCC | 1 cut(s) | 699 |
| BmiI | GGNNCC | 3 cut(s) | 580, 666, 2445 |
| BmrFI | CCNGG | 3 cut(s) | 987, 1503, 2256 |
| BmrI | ACTGGG | 1 cut(s) | 1529 |
| BmsI | GCATC | 2 cut(s) | 1213, 2062 |
| BmuI | ACTGGG | 1 cut(s) | 1529 |
| BoxI | GACNNNNGTC | 1 cut(s) | 489 |
| BpiI | GAAGAC | 2 cut(s) | 648, 1254 |
| BpmI | CTGGAG | 2 cut(s) | 957, 2503 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1887 |
| BpuEI | CTTGAG | 3 cut(s) | 163, 1423, 2580 |
| Bsa29I | ATCGAT | 2 cut(s) | 1700, 2117 |
| BsaAI | YACGTR | 1 cut(s) | 835 |
| BsaHI | GRCGYC | 2 cut(s) | 515, 645 |
| BsaJI | CCNNGG | 2 cut(s) | 801, 985 |
| BsaWI | WCCGGW | 2 cut(s) | 1277, 1349 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 955, 985 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 155 |
| Bse118I | RCCGGY | 1 cut(s) | 1268 |
| Bse1I | ACTGG | 6 cut(s) | 160, 574, 974, 1535, 1683, 2091 |
| Bse3DI | GCAATG | 1 cut(s) | 2508 |
| BseBI | CCWGG | 3 cut(s) | 987, 1503, 2256 |
| BseCI | ATCGAT | 2 cut(s) | 1700, 2117 |
| BseDI | CCNNGG | 2 cut(s) | 801, 985 |
| BseGI | GGATG | 3 cut(s) | 462, 1465, 2111 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 155 |
| BseMI | GCAATG | 1 cut(s) | 2508 |
| BseMII | CTCAG | 4 cut(s) | 843, 1746, 1878, 2240 |
| BseNI | ACTGG | 6 cut(s) | 160, 574, 974, 1535, 1683, 2091 |
| BseRI | GAGGAG | 4 cut(s) | 464, 818, 1368, 2436 |
| BseSI | GKGCMC | 1 cut(s) | 787 |
| BseXI | GCAGC | 2 cut(s) | 773, 1301 |
| BseYI | CCCAGC | 1 cut(s) | 2368 |
| Bsh1236I | CGCG | 3 cut(s) | 422, 632, 1663 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2537 |
| BshFI | GGCC | 3 cut(s) | 230, 544, 872 |
| BshVI | ATCGAT | 2 cut(s) | 1700, 2117 |
| BsiEI | CGRYCG | 1 cut(s) | 2537 |
| BsiHKAI | GWGCWC | 3 cut(s) | 787, 810, 2491 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2373 |
| BsiSI | CCGG | 3 cut(s) | 1269, 1278, 1350 |
| BsiWI | CGTACG | 1 cut(s) | 918 |
| BslFI | GGGAC | 3 cut(s) | 1163, 2530, 2639 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 155 |
| BsmAI | GTCTC | 2 cut(s) | 1389, 1700 |
| BsmFI | GGGAC | 3 cut(s) | 1163, 2530, 2639 |
| BsnI | GGCC | 3 cut(s) | 230, 544, 872 |
| BsoBI | CYCGRG | 1 cut(s) | 2373 |
| Bsp1286I | GDGCHC | 3 cut(s) | 787, 810, 2491 |
| Bsp143I | GATC | 8 cut(s) | 82, 470, 1168, 1636, 1957, 2161, 2201, 2443 |
| BspACI | CCGC | 7 cut(s) | 111, 422, 598, 759, 1661, 2076, 2183 |
| BspANI | GGCC | 3 cut(s) | 230, 544, 872 |
| BspCNI | CTCAG | 4 cut(s) | 844, 1745, 1879, 2239 |
| BspDI | ATCGAT | 2 cut(s) | 1700, 2117 |
| BspFNI | CGCG | 3 cut(s) | 422, 632, 1663 |
| BspLI | GGNNCC | 3 cut(s) | 580, 666, 2445 |
| BspMI | ACCTGC | 1 cut(s) | 778 |
| BspPI | GGATC | 3 cut(s) | 1163, 2438, 2451 |
| BspQI | GCTCTTC | 1 cut(s) | 1446 |
| BsrDI | GCAATG | 1 cut(s) | 2508 |
| BsrFI | RCCGGY | 1 cut(s) | 1268 |
| BsrI | ACTGG | 6 cut(s) | 160, 574, 974, 1535, 1683, 2091 |
| BssAI | RCCGGY | 1 cut(s) | 1268 |
| BssECI | CCNNGG | 2 cut(s) | 801, 985 |
| BssMI | GATC | 8 cut(s) | 82, 470, 1168, 1636, 1957, 2161, 2201, 2443 |
| BssNAI | GTATAC | 1 cut(s) | 2576 |
| BssNI | GRCGYC | 2 cut(s) | 515, 645 |
| Bst1107I | GTATAC | 1 cut(s) | 2576 |
| Bst2UI | CCWGG | 3 cut(s) | 987, 1503, 2256 |
| Bst4CI | ACNGT | 9 cut(s) | 165, 359, 789, 1069, 1086, 1647, 2027, 2239, 2318 |
| Bst6I | CTCTTC | 1 cut(s) | 1446 |
| BstACI | GRCGYC | 2 cut(s) | 515, 645 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 770 |
| BstBAI | YACGTR | 1 cut(s) | 835 |
| BstDEI | CTNAG | 9 cut(s) | 375, 539, 608, 852, 1003, 1521, 1732, 1887, 2226 |
| BstF5I | GGATG | 3 cut(s) | 462, 1465, 2111 |
| BstFNI | CGCG | 3 cut(s) | 422, 632, 1663 |
| BstH2I | RGCGCY | 1 cut(s) | 399 |
| BstHHI | GCGC | 2 cut(s) | 398, 2513 |
| BstKTI | GATC | 8 cut(s) | 85, 473, 1171, 1639, 1960, 2164, 2204, 2446 |
| BstMAI | GTCTC | 2 cut(s) | 1389, 1700 |
| BstMBI | GATC | 8 cut(s) | 82, 470, 1168, 1636, 1957, 2161, 2201, 2443 |
| BstMCI | CGRYCG | 1 cut(s) | 2537 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 50, 770, 923, 2072, 2180 |
| BstNI | CCWGG | 3 cut(s) | 987, 1503, 2256 |
| BstNSI | RCATGY | 2 cut(s) | 1987, 2545 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 489 |
| BstSCI | CCNGG | 3 cut(s) | 985, 1501, 2254 |
| BstSFI | CTRYAG | 3 cut(s) | 333, 866, 2314 |
| BstSLI | GKGCMC | 1 cut(s) | 787 |
| BstUI | CGCG | 3 cut(s) | 422, 632, 1663 |
| BstV1I | GCAGC | 2 cut(s) | 773, 1301 |
| BstV2I | GAAGAC | 2 cut(s) | 648, 1254 |
| BstX2I | RGATCY | 4 cut(s) | 1168, 1636, 2201, 2443 |
| BstYI | RGATCY | 4 cut(s) | 1168, 1636, 2201, 2443 |
| BstZ17I | GTATAC | 1 cut(s) | 2576 |
| Bsu15I | ATCGAT | 2 cut(s) | 1700, 2117 |
| BsuI | GTATCC | 1 cut(s) | 645 |
| BsuRI | GGCC | 3 cut(s) | 230, 544, 872 |
| BsuTUI | ATCGAT | 2 cut(s) | 1700, 2117 |
| BtgZI | GCGATG | 1 cut(s) | 2322 |
| BtrI | CACGTC | 2 cut(s) | 487, 510 |
| BtsCI | GGATG | 3 cut(s) | 462, 1465, 2111 |
| BtsIMutI | CAGTG | 1 cut(s) | 567 |
| BveI | ACCTGC | 1 cut(s) | 778 |
| CfoI | GCGC | 2 cut(s) | 398, 2513 |
| Cfr10I | RCCGGY | 1 cut(s) | 1268 |
| Cfr13I | GGNCC | 1 cut(s) | 699 |
| ClaI | ATCGAT | 2 cut(s) | 1700, 2117 |
| CseI | GACGC | 3 cut(s) | 428, 523, 1165 |
| Csp6I | GTAC | 7 cut(s) | 32, 601, 838, 919, 1586, 2142, 2250 |
| CviQI | GTAC | 7 cut(s) | 32, 601, 838, 919, 1586, 2142, 2250 |
| DdeI | CTNAG | 9 cut(s) | 375, 539, 608, 852, 1003, 1521, 1732, 1887, 2226 |
| DpnI | GATC | 8 cut(s) | 84, 472, 1170, 1638, 1959, 2163, 2203, 2445 |
| DpnII | GATC | 8 cut(s) | 82, 470, 1168, 1636, 1957, 2161, 2201, 2443 |
| DraI | TTTAAA | 2 cut(s) | 1882, 2040 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 241 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 241 |
| Eam1104I | CTCTTC | 1 cut(s) | 1446 |
| EarI | CTCTTC | 1 cut(s) | 1446 |
| EciI | GGCGGA | 1 cut(s) | 2198 |
| Ecl136II | GAGCTC | 2 cut(s) | 808, 2489 |
| Eco147I | AGGCCT | 1 cut(s) | 544 |
| Eco24I | GRGCYC | 2 cut(s) | 810, 2491 |
| Eco32I | GATATC | 2 cut(s) | 1126, 2261 |
| Eco47I | GGWCC | 1 cut(s) | 699 |
| Eco53kI | GAGCTC | 2 cut(s) | 808, 2489 |
| Eco57I | CTGAAG | 2 cut(s) | 96, 1487 |
| Eco88I | CYCGRG | 1 cut(s) | 2373 |
| EcoICRI | GAGCTC | 2 cut(s) | 808, 2489 |
| EcoRI | GAATTC | 1 cut(s) | 1296 |
| EcoRII | CCWGG | 3 cut(s) | 985, 1501, 2254 |
| EcoRV | GATATC | 2 cut(s) | 1126, 2261 |
| EcoT22I | ATGCAT | 1 cut(s) | 1228 |
| EcoT38I | GRGCYC | 2 cut(s) | 810, 2491 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1231, 1263, 1428, 1460 |
| FaqI | GGGAC | 3 cut(s) | 1163, 2530, 2639 |
| FauI | CCCGC | 1 cut(s) | 415 |
| FblI | GTMKAC | 4 cut(s) | 512, 2110, 2313, 2575 |
| Fnu4HI | GCNGC | 4 cut(s) | 762, 1290, 1661, 2076 |
| FokI | GGATG | 3 cut(s) | 449, 1472, 2118 |
| FriOI | GRGCYC | 2 cut(s) | 810, 2491 |
| Fsp4HI | GCNGC | 4 cut(s) | 762, 1290, 1661, 2076 |
| FspBI | CTAG | 9 cut(s) | 416, 548, 882, 1370, 1374, 1580, 1589, 2081, 2658 |
| GlaI | GCGC | 2 cut(s) | 397, 2512 |
| GluI | GCNGC | 4 cut(s) | 762, 1290, 1661, 2076 |
| GsaI | CCCAGC | 1 cut(s) | 2372 |
| GsuI | CTGGAG | 2 cut(s) | 957, 2503 |
| HaeII | RGCGCY | 1 cut(s) | 399 |
| HaeIII | GGCC | 3 cut(s) | 230, 544, 872 |
| HapII | CCGG | 3 cut(s) | 1269, 1278, 1350 |
| HgaI | GACGC | 3 cut(s) | 428, 523, 1165 |
| HhaI | GCGC | 2 cut(s) | 398, 2513 |
| Hin1I | GRCGYC | 2 cut(s) | 515, 645 |
| Hin6I | GCGC | 2 cut(s) | 396, 2511 |
| HinP1I | GCGC | 2 cut(s) | 396, 2511 |
| HincII | GTYRAC | 2 cut(s) | 513, 2111 |
| HindII | GTYRAC | 2 cut(s) | 513, 2111 |
| HindIII | AAGCTT | 2 cut(s) | 181, 924 |
| HpaII | CCGG | 3 cut(s) | 1269, 1278, 1350 |
| HphI | GGTGA | 4 cut(s) | 126, 1025, 1817, 1904 |
| Hpy166II | GTNNAC | 9 cut(s) | 116, 153, 513, 785, 838, 1912, 2111, 2314, 2576 |
| Hpy8I | GTNNAC | 9 cut(s) | 116, 153, 513, 785, 838, 1912, 2111, 2314, 2576 |
| Hpy99I | CGWCG | 3 cut(s) | 514, 517, 2072 |
| HpyAV | CCTTC | 4 cut(s) | 83, 1772, 2462, 2529 |
| HpyCH4III | ACNGT | 9 cut(s) | 165, 359, 789, 1069, 1086, 1647, 2027, 2239, 2318 |
| HpyCH4IV | ACGT | 7 cut(s) | 254, 486, 509, 645, 834, 2356, 2578 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 50, 770, 923, 2072, 2180 |
| HpyF3I | CTNAG | 9 cut(s) | 375, 539, 608, 852, 1003, 1521, 1732, 1887, 2226 |
| HpySE526I | ACGT | 7 cut(s) | 254, 486, 509, 645, 834, 2356, 2578 |
| Hsp92I | GRCGYC | 2 cut(s) | 515, 645 |
| HspAI | GCGC | 2 cut(s) | 396, 2511 |
| Kzo9I | GATC | 8 cut(s) | 82, 470, 1168, 1636, 1957, 2161, 2201, 2443 |
| LguI | GCTCTTC | 1 cut(s) | 1446 |
| LmnI | GCTCC | 1 cut(s) | 805 |
| Lsp1109I | GCAGC | 2 cut(s) | 773, 1301 |
| LweI | GCATC | 2 cut(s) | 1213, 2062 |
| MaeI | CTAG | 9 cut(s) | 416, 548, 882, 1370, 1374, 1580, 1589, 2081, 2658 |
| MaeII | ACGT | 7 cut(s) | 254, 486, 509, 645, 834, 2356, 2578 |
| MaeIII | GTNAC | 5 cut(s) | 132, 287, 861, 976, 1727 |
| MalI | GATC | 8 cut(s) | 84, 472, 1170, 1638, 1959, 2163, 2203, 2445 |
| MboI | GATC | 8 cut(s) | 82, 470, 1168, 1636, 1957, 2161, 2201, 2443 |
| MfeI | CAATTG | 1 cut(s) | 283 |
| MflI | RGATCY | 4 cut(s) | 1168, 1636, 2201, 2443 |
| MhlI | GDGCHC | 3 cut(s) | 787, 810, 2491 |
| MlyI | GAGTC | 3 cut(s) | 170, 229, 1800 |
| MmeI | TCCRAC | 3 cut(s) | 1068, 2136, 2233 |
| Mph1103I | ATGCAT | 1 cut(s) | 1228 |
| MroXI | GAANNNNTTC | 4 cut(s) | 590, 1246, 1488, 1529 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1580, 2130 |
| MspA1I | CMGCKG | 1 cut(s) | 1292 |
| MspI | CCGG | 3 cut(s) | 1269, 1278, 1350 |
| MspR9I | CCNGG | 3 cut(s) | 987, 1503, 2256 |
| MunI | CAATTG | 1 cut(s) | 283 |
| MvaI | CCWGG | 3 cut(s) | 987, 1503, 2256 |
| MvnI | CGCG | 3 cut(s) | 422, 632, 1663 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 50, 770, 923, 2072, 2180 |
| NdeII | GATC | 8 cut(s) | 82, 470, 1168, 1636, 1957, 2161, 2201, 2443 |
| NlaIV | GGNNCC | 3 cut(s) | 580, 666, 2445 |
| NmuCI | GTSAC | 2 cut(s) | 132, 861 |
| NsiI | ATGCAT | 1 cut(s) | 1228 |
| NspI | RCATGY | 2 cut(s) | 1987, 2545 |
| PceI | AGGCCT | 1 cut(s) | 544 |
| PciI | ACATGT | 1 cut(s) | 1983 |
| PciSI | GCTCTTC | 1 cut(s) | 1446 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 831 |
| PdmI | GAANNNNTTC | 4 cut(s) | 590, 1246, 1488, 1529 |
| Pfl23II | CGTACG | 1 cut(s) | 918 |
| PfoI | TCCNGGA | 1 cut(s) | 2254 |
| PkrI | GCNGC | 4 cut(s) | 763, 1291, 1662, 2077 |
| PleI | GAGTC | 3 cut(s) | 170, 229, 1799 |
| PpsI | GAGTC | 3 cut(s) | 170, 229, 1799 |
| Ppu21I | YACGTR | 1 cut(s) | 835 |
| PscI | ACATGT | 1 cut(s) | 1983 |
| PshAI | GACNNNNGTC | 1 cut(s) | 489 |
| PsiI | TTATAA | 1 cut(s) | 2466 |
| Psp124BI | GAGCTC | 2 cut(s) | 810, 2491 |
| Psp6I | CCWGG | 3 cut(s) | 985, 1501, 2254 |
| PspFI | CCCAGC | 1 cut(s) | 2368 |
| PspGI | CCWGG | 3 cut(s) | 985, 1501, 2254 |
| PspLI | CGTACG | 1 cut(s) | 918 |
| PspN4I | GGNNCC | 3 cut(s) | 580, 666, 2445 |
| PspPI | GGNCC | 1 cut(s) | 699 |
| PsuI | RGATCY | 4 cut(s) | 1168, 1636, 2201, 2443 |
| PvuII | CAGCTG | 1 cut(s) | 1292 |
| RsaI | GTAC | 7 cut(s) | 33, 602, 839, 920, 1587, 2143, 2251 |
| RsaNI | GTAC | 7 cut(s) | 32, 601, 838, 919, 1586, 2142, 2250 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1580, 2130 |
| SacI | GAGCTC | 2 cut(s) | 810, 2491 |
| SalI | GTCGAC | 2 cut(s) | 511, 2109 |
| SapI | GCTCTTC | 1 cut(s) | 1446 |
| SatI | GCNGC | 4 cut(s) | 762, 1290, 1661, 2076 |
| Sau3AI | GATC | 8 cut(s) | 82, 470, 1168, 1636, 1957, 2161, 2201, 2443 |
| Sau96I | GGNCC | 1 cut(s) | 699 |
| SchI | GAGTC | 3 cut(s) | 170, 229, 1800 |
| ScrFI | CCNGG | 3 cut(s) | 987, 1503, 2256 |
| SduI | GDGCHC | 3 cut(s) | 787, 810, 2491 |
| SfaNI | GCATC | 2 cut(s) | 1213, 2062 |
| SfcI | CTRYAG | 3 cut(s) | 333, 866, 2314 |
| SgrDI | CGTCGACG | 1 cut(s) | 511 |
| SinI | GGWCC | 1 cut(s) | 699 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1580, 2130 |
| SmlI | CTYRAG | 3 cut(s) | 178, 1402, 2595 |
| SmoI | CTYRAG | 3 cut(s) | 178, 1402, 2595 |
| SpeI | ACTAGT | 1 cut(s) | 1588 |
| SseBI | AGGCCT | 1 cut(s) | 544 |
| SsiI | CCGC | 7 cut(s) | 111, 422, 598, 759, 1661, 2076, 2183 |
| SspI | AATATT | 4 cut(s) | 367, 431, 1285, 2276 |
| SspMI | CTAG | 9 cut(s) | 416, 548, 882, 1370, 1374, 1580, 1589, 2081, 2658 |
| SstI | GAGCTC | 2 cut(s) | 810, 2491 |
| StuI | AGGCCT | 1 cut(s) | 544 |
| StyD4I | CCNGG | 3 cut(s) | 985, 1501, 2254 |
| TaaI | ACNGT | 9 cut(s) | 165, 359, 789, 1069, 1086, 1647, 2027, 2239, 2318 |
| TaiI | ACGT | 7 cut(s) | 257, 489, 512, 648, 837, 2359, 2581 |
| TaqII | GACCGA | 1 cut(s) | 2551 |
| TatI | WGTACW | 1 cut(s) | 2141 |
| TauI | GCSGC | 2 cut(s) | 1663, 2078 |
| TscAI | CASTG | 1 cut(s) | 574 |
| TseFI | GTSAC | 2 cut(s) | 132, 861 |
| TseI | GCWGC | 2 cut(s) | 761, 1289 |
| Tsp45I | GTSAC | 2 cut(s) | 132, 861 |
| TspGWI | ACGGA | 1 cut(s) | 613 |
| TspRI | CASTG | 1 cut(s) | 574 |
| VneI | GTGCAC | 1 cut(s) | 783 |
| VpaK11BI | GGWCC | 1 cut(s) | 699 |
| XapI | RAATTY | 6 cut(s) | 475, 1075, 1296, 1364, 1529, 1627 |
| XbaI | TCTAGA | 2 cut(s) | 547, 881 |
| XceI | RCATGY | 2 cut(s) | 1987, 2545 |
| XmiI | GTMKAC | 4 cut(s) | 512, 2110, 2313, 2575 |
| XmnI | GAANNNNTTC | 4 cut(s) | 590, 1246, 1488, 1529 |
| XspI | CTAG | 9 cut(s) | 416, 548, 882, 1370, 1374, 1580, 1589, 2081, 2658 |
| ZraI | GACGTC | 1 cut(s) | 646 |
| Zsp2I | ATGCAT | 1 cut(s) | 1228 |