AT3G54680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0023632
Physical Location & Seq
Forward (+)
20244284 .. 20246080
1797 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G54680.1

Sequence Viewer

Length: 636 bp
ATGGCGGCAAGAGCCAACAACAAATACACCTCTATCAACTTCAACCACATCCTTCACAAAGATCCTCCTTCATCTTCTTCATCTTCCTCCTCTGCTTCTTATTCCTCCGTCGCTCGTTCCAATGGCCGTATGCTCGTCCTCACCAAATCTTCCCCCAAACCTCTAAGATCTCCCTCCGCTGCTCCCACCACCACTACGACCGCACCTCCTATCTCTACAGCTCCGAGGATTCCTTCAAATCAAGCCATCTCTGATCCAGATCCGAGTCAGATCTCTCTTCGTCCCTTAGGTCATACAGGATCTAGTTCCTCGCTTTCTTTTCCAATTCGGACTCCTGAAATCAACAAGGCTCCGGAGGTAAATGCTCCAACTCCGGTTTCATTGTCCCCGAAACCTGATCGGTTCGTGCCGCCGCATCTTAGGCCAGGTTTTGTTCGGAAAGACGAGAAACCTGGACTCAACTCTTCTCGAGTTAGAGATCCGAATCCGAATCTGAATCAGAGATTGCCTAACCAGGAACAGCCACGGCAGGAATATTTCGGTTATGGACAGCCCGGACGGCCCAAATCGGGCGGGTATGAGAGGATCCGTACGGATCCGAGAATAACCGGAAACCGACCCGGCACCTCCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

22.75

Weight (kDa)

10.93

Isoelectric Point (pI)

60.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023632)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54680
fragaria_vesca FvH4_6g26780
prunus_persica Prupe.3G128600_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 623
AccIII TCCGGA 2 cut(s) 352, 629
AciI CCGC 6 cut(s) 5, 177, 201, 410, 413, 573
AclWI GGATC 9 cut(s) 56, 248, 254, 307, 473, 580, 590, 593, 603
AcoI YGGCCR 1 cut(s) 124
AfaI GTAC 1 cut(s) 592
AfiI CCNNNNNNNGG 1 cut(s) 569
AgsI TTSAA 2 cut(s) 43, 237
AjnI CCWGG 3 cut(s) 424, 451, 513
AjuI GAANNNNNNNTTGG 2 cut(s) 361, 393
AluBI AGCT 1 cut(s) 221
AluI AGCT 1 cut(s) 221
AlwI GGATC 9 cut(s) 56, 248, 254, 307, 473, 580, 590, 593, 603
Ama87I CYCGRG 1 cut(s) 468
Aor13HI TCCGGA 2 cut(s) 352, 629
AoxI GGCC 3 cut(s) 124, 422, 560
ApeKI GCWGC 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 561
AsuC2I CCSGG 2 cut(s) 555, 621
AsuHPI GGTGA 1 cut(s) 133
AvaI CYCGRG 1 cut(s) 468
AxyI CCTNAGG 1 cut(s) 286
BamHI GGATCC 2 cut(s) 585, 595
BanI GGYRCC 1 cut(s) 623
BbvI GCAGC 1 cut(s) 166
BccI CCATC 1 cut(s) 254
BceAI ACGGC 3 cut(s) 111, 542, 575
BciT130I CCWGG 3 cut(s) 426, 453, 515
BcnI CCSGG 2 cut(s) 555, 621
BfaI CTAG 1 cut(s) 303
BfmI CTRYAG 1 cut(s) 216
BglI GCCNNNNNGGC 1 cut(s) 559
BglII AGATCT 2 cut(s) 167, 270
BisI GCNGC 4 cut(s) 6, 180, 410, 413
BlsI GCNGC 4 cut(s) 7, 181, 411, 414
Bme1390I CCNGG 5 cut(s) 426, 453, 515, 555, 621
BmeT110I CYCGRG 1 cut(s) 468
BmgT120I GGNCC 1 cut(s) 561
BmiI GGNNCC 4 cut(s) 351, 587, 597, 625
BmrFI CCNGG 5 cut(s) 426, 453, 515, 555, 621
BmsI GCATC 1 cut(s) 424
BpuMI CCSGG 2 cut(s) 555, 621
BsaBI GATNNNNATC 2 cut(s) 258, 483
BsaJI CCNNGG 2 cut(s) 224, 524
BsaWI WCCGGW 4 cut(s) 352, 373, 608, 629
BsaXI ACNNNNNCTCC 2 cut(s) 190, 220
Bsc4I CCNNNNNNNGG 1 cut(s) 569
Bse21I CCTNAGG 1 cut(s) 286
Bse8I GATNNNNATC 2 cut(s) 258, 483
BseAI TCCGGA 2 cut(s) 352, 629
BseBI CCWGG 3 cut(s) 426, 453, 515
BseDI CCNNGG 2 cut(s) 224, 524
BseGI GGATG 1 cut(s) 48
BseJI GATNNNNATC 2 cut(s) 258, 483
BseLI CCNNNNNNNGG 1 cut(s) 569
BseRI GAGGAG 1 cut(s) 79
BseXI GCAGC 1 cut(s) 166
Bsh1285I CGRYCG 1 cut(s) 201
BshFI GGCC 3 cut(s) 126, 424, 562
BshNI GGYRCC 1 cut(s) 623
BsiEI CGRYCG 1 cut(s) 201
BsiHKCI CYCGRG 1 cut(s) 468
BsiSI CCGG 6 cut(s) 353, 374, 555, 609, 621, 630
BsiWI CGTACG 1 cut(s) 590
BslFI GGGAC 2 cut(s) 267, 370
BslI CCNNNNNNNGG 1 cut(s) 569
BsmFI GGGAC 2 cut(s) 267, 370
BsnI GGCC 3 cut(s) 126, 424, 562
BsoBI CYCGRG 1 cut(s) 468
Bsp13I TCCGGA 2 cut(s) 352, 629
BspACI CCGC 6 cut(s) 5, 177, 201, 410, 413, 573
BspANI GGCC 3 cut(s) 126, 424, 562
BspEI TCCGGA 2 cut(s) 352, 629
BspLI GGNNCC 4 cut(s) 351, 587, 597, 625
BspPI GGATC 9 cut(s) 56, 248, 254, 307, 473, 580, 590, 593, 603
BspT107I GGYRCC 1 cut(s) 623
BssECI CCNNGG 2 cut(s) 224, 524
Bst2UI CCWGG 3 cut(s) 426, 453, 515
Bst6I CTCTTC 2 cut(s) 282, 469
BstDEI CTNAG 3 cut(s) 164, 286, 419
BstDSI CCRYGG 1 cut(s) 524
BstF5I GGATG 1 cut(s) 48
BstMCI CGRYCG 1 cut(s) 201
BstMWI GCNNNNNNNGC 3 cut(s) 11, 421, 559
BstNI CCWGG 3 cut(s) 426, 453, 515
BstSCI CCNGG 5 cut(s) 424, 451, 513, 553, 619
BstSFI CTRYAG 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 166
BstX2I RGATCY 8 cut(s) 61, 167, 259, 270, 299, 478, 585, 595
BstYI RGATCY 8 cut(s) 61, 167, 259, 270, 299, 478, 585, 595
Bsu36I CCTNAGG 1 cut(s) 286
BsuRI GGCC 3 cut(s) 126, 424, 562
BtgI CCRYGG 1 cut(s) 524
BtsCI GGATG 1 cut(s) 48
Cfr13I GGNCC 1 cut(s) 561
Csp6I GTAC 1 cut(s) 591
CviJI RGCY 9 cut(s) 14, 126, 221, 245, 350, 424, 523, 553, 562
CviKI_1 RGCY 9 cut(s) 14, 126, 221, 245, 350, 424, 523, 553, 562
CviQI GTAC 1 cut(s) 591
DdeI CTNAG 3 cut(s) 164, 286, 419
EaeI YGGCCR 1 cut(s) 124
Eam1104I CTCTTC 2 cut(s) 282, 469
EarI CTCTTC 2 cut(s) 282, 469
Eco81I CCTNAGG 1 cut(s) 286
Eco88I CYCGRG 1 cut(s) 468
EcoRII CCWGG 3 cut(s) 424, 451, 513
FaiI YATR 4 cut(s) 131, 294, 546, 579
FaqI GGGAC 2 cut(s) 267, 370
FauI CCCGC 1 cut(s) 566
Fnu4HI GCNGC 4 cut(s) 6, 180, 410, 413
FokI GGATG 1 cut(s) 35
Fsp4HI GCNGC 4 cut(s) 6, 180, 410, 413
FspBI CTAG 1 cut(s) 303
GluI GCNGC 4 cut(s) 6, 180, 410, 413
HaeIII GGCC 3 cut(s) 126, 424, 562
HapII CCGG 6 cut(s) 353, 374, 555, 609, 621, 630
HinfI GANTC 7 cut(s) 229, 265, 331, 456, 484, 490, 496
HpaII CCGG 6 cut(s) 353, 374, 555, 609, 621, 630
HphI GGTGA 1 cut(s) 133
Hpy188III TCNNGA 5 cut(s) 257, 335, 353, 468, 630
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 3 cut(s) 62, 78, 243
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 421, 559
HpyF3I CTNAG 3 cut(s) 164, 286, 419
Kpn2I TCCGGA 2 cut(s) 352, 629
LmnI GCTCC 4 cut(s) 187, 226, 355, 370
Lsp1109I GCAGC 1 cut(s) 166
LweI GCATC 1 cut(s) 424
MaeI CTAG 1 cut(s) 303
MboII GAAGA 6 cut(s) 66, 69, 75, 141, 269, 456
MflI RGATCY 8 cut(s) 61, 167, 259, 270, 299, 478, 585, 595
MluCI AATT 1 cut(s) 324
MlyI GAGTC 3 cut(s) 274, 325, 450
MmeI TCCRAC 1 cut(s) 392
MroI TCCGGA 2 cut(s) 352, 629
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 6 cut(s) 353, 374, 555, 609, 621, 630
MspR9I CCNGG 5 cut(s) 426, 453, 515, 555, 621
MvaI CCWGG 3 cut(s) 426, 453, 515
MwoI GCNNNNNNNGC 3 cut(s) 11, 421, 559
NciI CCSGG 2 cut(s) 555, 621
NlaIV GGNNCC 4 cut(s) 351, 587, 597, 625
PaeR7I CTCGAG 1 cut(s) 468
PfeI GAWTC 4 cut(s) 229, 484, 490, 496
Pfl23II CGTACG 1 cut(s) 590
PkrI GCNGC 4 cut(s) 7, 181, 411, 414
PleI GAGTC 3 cut(s) 273, 325, 450
PpsI GAGTC 3 cut(s) 273, 325, 450
Psp6I CCWGG 3 cut(s) 424, 451, 513
PspGI CCWGG 3 cut(s) 424, 451, 513
PspLI CGTACG 1 cut(s) 590
PspN4I GGNNCC 4 cut(s) 351, 587, 597, 625
PspPI GGNCC 1 cut(s) 561
PsuI RGATCY 8 cut(s) 61, 167, 259, 270, 299, 478, 585, 595
RsaI GTAC 1 cut(s) 592
RsaNI GTAC 1 cut(s) 591
SatI GCNGC 4 cut(s) 6, 180, 410, 413
Sau96I GGNCC 1 cut(s) 561
SchI GAGTC 3 cut(s) 274, 325, 450
ScrFI CCNGG 5 cut(s) 426, 453, 515, 555, 621
SfaNI GCATC 1 cut(s) 424
SfcI CTRYAG 1 cut(s) 216
Sfr274I CTCGAG 1 cut(s) 468
SlaI CTCGAG 1 cut(s) 468
SmlI CTYRAG 1 cut(s) 468
SmoI CTYRAG 1 cut(s) 468
Sse9I AATT 1 cut(s) 324
SsiI CCGC 6 cut(s) 5, 177, 201, 410, 413, 573
SspI AATATT 1 cut(s) 536
SspMI CTAG 1 cut(s) 303
StyD4I CCNGG 5 cut(s) 424, 451, 513, 553, 619
TaqI TCGA 1 cut(s) 469
TasI AATT 1 cut(s) 324
TauI GCSGC 3 cut(s) 8, 412, 415
TfiI GAWTC 4 cut(s) 229, 484, 490, 496
TseI GCWGC 1 cut(s) 179
TspDTI ATGAA 3 cut(s) 60, 69, 369
TspGWI ACGGA 3 cut(s) 97, 578, 608
XhoI CTCGAG 1 cut(s) 468
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.