FvH4_6g26780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0023632
Physical Location & Seq
Forward (+)
20485667 .. 20487973
2307 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g26780.t1

Sequence Viewer

Length: 429 bp
ATGCTCGTCCTAACCCGACCCATCTCCAAACCCAAACCCGATCCCACACCCCTTTCGCCTCAACAACTCCCACCTCAGATCCGGTCCGGCTCCGGCTCCACCGTCTCGCCACCGGTTCTGAGCCAAGGAAGGGACAAGAAAGCTACTGTGTTGGTCTCTTCGCCGAAACCGGATAAGTTCGTGCCTCCGCATCTTAGACCGGGTTTTGTTGCCAAGGAGGACCGGCCGGGACCCGATGTGATCAGACCTCGGGAGGCGGGTCACAAGCATTTTAGGCCTCTGGATCGGTTTTGGGAAGATGGGCGTCCCAAGTCGGGTGGTGACTCGAATTTGGGTACCATGAATAGGCCCAGATCGTCTGGCTGGAACCGGCCCAGTTCTAGTGGATGAACATCTGTATCAAGACTGAATTCTTTCCTGAAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.45

Weight (kDa)

11.14

Isoelectric Point (pI)

58.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023632)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54680
fragaria_vesca FvH4_6g26780
prunus_persica Prupe.3G128600_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 335
AccB1I GGYRCC 1 cut(s) 335
AciI CCGC 2 cut(s) 188, 257
AclWI GGATC 3 cut(s) 35, 73, 291
AcoI YGGCCR 1 cut(s) 224
AcsI RAATTY 2 cut(s) 328, 409
AcyI GRCGYC 1 cut(s) 304
AfaI GTAC 1 cut(s) 337
AfiI CCNNNNNNNGG 3 cut(s) 130, 314, 345
AgeI ACCGGT 1 cut(s) 112
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
Alw26I GTCTC 2 cut(s) 109, 160
AlwI GGATC 3 cut(s) 35, 73, 291
Ama87I CYCGRG 1 cut(s) 249
AoxI GGCC 4 cut(s) 224, 275, 347, 371
ApoI RAATTY 2 cut(s) 328, 409
AsiGI ACCGGT 1 cut(s) 112
Asp700I GAANNNNTTC 1 cut(s) 413
Asp718I GGTACC 1 cut(s) 335
AspS9I GGNCC 5 cut(s) 84, 220, 230, 348, 372
AsuC2I CCSGG 2 cut(s) 201, 228
AsuHPI GGTGA 1 cut(s) 332
AvaI CYCGRG 1 cut(s) 249
AvaII GGWCC 3 cut(s) 84, 220, 230
BaeI ACNNNNGTAYC 2 cut(s) 381, 414
BanI GGYRCC 1 cut(s) 335
BccI CCATC 2 cut(s) 29, 293
BclI TGATCA 1 cut(s) 240
BcnI CCSGG 2 cut(s) 201, 228
BcoDI GTCTC 2 cut(s) 109, 160
BfaI CTAG 1 cut(s) 381
Bme1390I CCNGG 2 cut(s) 201, 228
Bme18I GGWCC 3 cut(s) 84, 220, 230
BmeT110I CYCGRG 1 cut(s) 249
BmgT120I GGNCC 5 cut(s) 84, 220, 230, 348, 372
BmiI GGNNCC 6 cut(s) 91, 97, 231, 232, 337, 368
BmrFI CCNGG 2 cut(s) 201, 228
BmrI ACTGGG 1 cut(s) 369
BmsI GCATC 1 cut(s) 199
BmuI ACTGGG 1 cut(s) 369
BpuMI CCSGG 2 cut(s) 201, 228
BsaBI GATNNNNATC 1 cut(s) 391
BsaHI GRCGYC 1 cut(s) 304
BsaI GGTCTC 1 cut(s) 160
BsaJI CCNNGG 3 cut(s) 124, 213, 248
BsaWI WCCGGW 3 cut(s) 81, 112, 169
Bsc4I CCNNNNNNNGG 3 cut(s) 130, 314, 345
Bse118I RCCGGY 3 cut(s) 112, 222, 369
Bse1I ACTGG 1 cut(s) 375
Bse8I GATNNNNATC 1 cut(s) 391
BseDI CCNNGG 3 cut(s) 124, 213, 248
BseGI GGATG 1 cut(s) 392
BseJI GATNNNNATC 1 cut(s) 391
BseLI CCNNNNNNNGG 3 cut(s) 130, 314, 345
BseMII CTCAG 2 cut(s) 89, 110
BseNI ACTGG 1 cut(s) 375
BseX3I CGGCCG 1 cut(s) 224
Bsh1285I CGRYCG 1 cut(s) 227
BshFI GGCC 4 cut(s) 226, 277, 349, 373
BshNI GGYRCC 1 cut(s) 335
BshTI ACCGGT 1 cut(s) 112
BsiEI CGRYCG 1 cut(s) 227
BsiHKCI CYCGRG 1 cut(s) 249
BsiSI CCGG 9 cut(s) 82, 87, 93, 113, 170, 200, 223, 227, 370
BslFI GGGAC 3 cut(s) 146, 243, 291
BslI CCNNNNNNNGG 3 cut(s) 130, 314, 345
BsmAI GTCTC 2 cut(s) 109, 160
BsmBI CGTCTC 1 cut(s) 109
BsmFI GGGAC 3 cut(s) 146, 243, 291
BsnI GGCC 4 cut(s) 226, 277, 349, 373
Bso31I GGTCTC 1 cut(s) 160
BsoBI CYCGRG 1 cut(s) 249
Bsp143I GATC 5 cut(s) 40, 78, 240, 283, 353
BspACI CCGC 2 cut(s) 188, 257
BspANI GGCC 4 cut(s) 226, 277, 349, 373
BspCNI CTCAG 2 cut(s) 88, 111
BspLI GGNNCC 6 cut(s) 91, 97, 231, 232, 337, 368
BspPI GGATC 3 cut(s) 35, 73, 291
BspT107I GGYRCC 1 cut(s) 335
BspTNI GGTCTC 1 cut(s) 160
BsrFI RCCGGY 3 cut(s) 112, 222, 369
BsrI ACTGG 1 cut(s) 375
BssAI RCCGGY 3 cut(s) 112, 222, 369
BssECI CCNNGG 3 cut(s) 124, 213, 248
BssMI GATC 5 cut(s) 40, 78, 240, 283, 353
BssNI GRCGYC 1 cut(s) 304
BssT1I CCWWGG 2 cut(s) 124, 213
Bst4CI ACNGT 2 cut(s) 103, 148
Bst6I CTCTTC 1 cut(s) 163
BstACI GRCGYC 1 cut(s) 304
BstDEI CTNAG 3 cut(s) 75, 119, 194
BstF5I GGATG 1 cut(s) 392
BstKTI GATC 5 cut(s) 43, 81, 243, 286, 356
BstMAI GTCTC 2 cut(s) 109, 160
BstMBI GATC 5 cut(s) 40, 78, 240, 283, 353
BstMCI CGRYCG 1 cut(s) 227
BstMWI GCNNNNNNNGC 1 cut(s) 274
BstSCI CCNGG 2 cut(s) 199, 226
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
BstZI CGGCCG 1 cut(s) 224
BsuRI GGCC 4 cut(s) 226, 277, 349, 373
BtsCI GGATG 1 cut(s) 392
Cfr10I RCCGGY 3 cut(s) 112, 222, 369
Cfr13I GGNCC 5 cut(s) 84, 220, 230, 348, 372
CpoI CGGWCCG 1 cut(s) 84
CseI GACGC 1 cut(s) 293
Csp6I GTAC 1 cut(s) 336
CspAI ACCGGT 1 cut(s) 112
CspCI CAANNNNNGTGG 2 cut(s) 298, 333
CspI CGGWCCG 1 cut(s) 84
CviAII CATG 1 cut(s) 340
CviJI RGCY 9 cut(s) 90, 96, 123, 143, 226, 277, 349, 363, 373
CviKI_1 RGCY 9 cut(s) 90, 96, 123, 143, 226, 277, 349, 363, 373
CviQI GTAC 1 cut(s) 336
DdeI CTNAG 3 cut(s) 75, 119, 194
DpnI GATC 5 cut(s) 42, 80, 242, 285, 355
DpnII GATC 5 cut(s) 40, 78, 240, 283, 353
EaeI YGGCCR 1 cut(s) 224
EagI CGGCCG 1 cut(s) 224
Eam1104I CTCTTC 1 cut(s) 163
EarI CTCTTC 1 cut(s) 163
EclXI CGGCCG 1 cut(s) 224
Eco130I CCWWGG 2 cut(s) 124, 213
Eco147I AGGCCT 1 cut(s) 277
Eco31I GGTCTC 1 cut(s) 160
Eco47I GGWCC 3 cut(s) 84, 220, 230
Eco52I CGGCCG 1 cut(s) 224
Eco88I CYCGRG 1 cut(s) 249
EcoO109I RGGNCCY 1 cut(s) 230
EcoRI GAATTC 1 cut(s) 409
EcoT14I CCWWGG 2 cut(s) 124, 213
ErhI CCWWGG 2 cut(s) 124, 213
Esp3I CGTCTC 1 cut(s) 109
FaeI CATG 1 cut(s) 343
FaiI YATR 1 cut(s) 341
FaqI GGGAC 3 cut(s) 146, 243, 291
FatI CATG 1 cut(s) 339
FauI CCCGC 1 cut(s) 250
FbaI TGATCA 1 cut(s) 240
FokI GGATG 1 cut(s) 399
FspBI CTAG 1 cut(s) 381
HaeIII GGCC 4 cut(s) 226, 277, 349, 373
HapII CCGG 9 cut(s) 82, 87, 93, 113, 170, 200, 223, 227, 370
HgaI GACGC 1 cut(s) 293
Hin1I GRCGYC 1 cut(s) 304
Hin1II CATG 1 cut(s) 343
HinfI GANTC 1 cut(s) 323
HpaII CCGG 9 cut(s) 82, 87, 93, 113, 170, 200, 223, 227, 370
HphI GGTGA 1 cut(s) 332
Hpy188I TCNGA 3 cut(s) 78, 120, 245
Hpy188III TCNNGA 4 cut(s) 251, 281, 402, 418
HpyAV CCTTC 1 cut(s) 123
HpyCH4III ACNGT 2 cut(s) 103, 148
HpyF10VI GCNNNNNNNGC 1 cut(s) 274
HpyF3I CTNAG 3 cut(s) 75, 119, 194
Hsp92I GRCGYC 1 cut(s) 304
Hsp92II CATG 1 cut(s) 343
KflI GGGWCCC 1 cut(s) 230
KpnI GGTACC 1 cut(s) 339
Ksp22I TGATCA 1 cut(s) 240
Kzo9I GATC 5 cut(s) 40, 78, 240, 283, 353
LmnI GCTCC 2 cut(s) 95, 101
LweI GCATC 1 cut(s) 199
MaeI CTAG 1 cut(s) 381
MaeIII GTNAC 2 cut(s) 260, 320
MalI GATC 5 cut(s) 42, 80, 242, 285, 355
MboI GATC 5 cut(s) 40, 78, 240, 283, 353
MboII GAAGA 2 cut(s) 150, 308
MflI RGATCY 1 cut(s) 78
MluCI AATT 2 cut(s) 328, 409
MlyI GAGTC 1 cut(s) 317
MnlI CCTC 7 cut(s) 69, 84, 195, 211, 247, 258, 288
MroXI GAANNNNTTC 1 cut(s) 413
MspI CCGG 9 cut(s) 82, 87, 93, 113, 170, 200, 223, 227, 370
MspR9I CCNGG 2 cut(s) 201, 228
MwoI GCNNNNNNNGC 1 cut(s) 274
NciI CCSGG 2 cut(s) 201, 228
NdeII GATC 5 cut(s) 40, 78, 240, 283, 353
NlaIII CATG 1 cut(s) 343
NlaIV GGNNCC 6 cut(s) 91, 97, 231, 232, 337, 368
NmuCI GTSAC 2 cut(s) 260, 320
PceI AGGCCT 1 cut(s) 277
PdmI GAANNNNTTC 1 cut(s) 413
PinAI ACCGGT 1 cut(s) 112
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
PpuMI RGGWCCY 1 cut(s) 230
Psp5II RGGWCCY 1 cut(s) 230
PspN4I GGNNCC 6 cut(s) 91, 97, 231, 232, 337, 368
PspPI GGNCC 5 cut(s) 84, 220, 230, 348, 372
PspPPI RGGWCCY 1 cut(s) 230
PsuI RGATCY 1 cut(s) 78
RsaI GTAC 1 cut(s) 337
RsaNI GTAC 1 cut(s) 336
Rsr2I CGGWCCG 1 cut(s) 84
RsrII CGGWCCG 1 cut(s) 84
Sau3AI GATC 5 cut(s) 40, 78, 240, 283, 353
Sau96I GGNCC 5 cut(s) 84, 220, 230, 348, 372
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 2 cut(s) 201, 228
SetI ASST 3 cut(s) 76, 145, 250
SfaNI GCATC 1 cut(s) 199
SinI GGWCC 3 cut(s) 84, 220, 230
Sse9I AATT 2 cut(s) 328, 409
SseBI AGGCCT 1 cut(s) 277
SsiI CCGC 2 cut(s) 188, 257
SspMI CTAG 1 cut(s) 381
StuI AGGCCT 1 cut(s) 277
StyD4I CCNGG 2 cut(s) 199, 226
StyI CCWWGG 2 cut(s) 124, 213
TaaI ACNGT 2 cut(s) 103, 148
TaqI TCGA 1 cut(s) 326
TasI AATT 2 cut(s) 328, 409
TseFI GTSAC 2 cut(s) 260, 320
Tsp45I GTSAC 2 cut(s) 260, 320
TspDTI ATGAA 2 cut(s) 356, 403
VpaK11BI GGWCC 3 cut(s) 84, 220, 230
XapI RAATTY 2 cut(s) 328, 409
XmnI GAANNNNTTC 1 cut(s) 413
XspI CTAG 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.