Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0026868

Physical Location & Seq

Genomic Coordinates Reverse (-)

20746554 .. 20746975

Gene Structure 422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G55935.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGATAACAGGAAGGAGAGATACTCCAAGAGCATCCGGGGCGATCGTGATGAGAGAGATAGGACTAAGCATCATCATGAGAGGTCTCACGAAGGTAGTAAGAGGAAAGATAGAGAAGAAGAGAATGGGACGGCTAGGGCAACAAACAAGAAATCTAGGTTTGAAGATGTGGCTAGGTTTGAGAATAGGCCGTATACTTGTTCTATTGCATCGGAAACTACTTCTGGTCAAATTATTGTAGCTGTTAAGCGATTTCAGGACTTGGCACATAAACAGACCAAGGGCTTTGTTCTGCGTGTGGATGCACTTGGAAGAGAAATCGATGAACACGGAAATGTGATTAGCGTCACTAAACCGATCAATCATAGTACTTTGATGGTTAATATTAGGGACAATGTCCCACATCGGAAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022414 GO:0030532 GO:0031323 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF1115 PRP3

Protein Analysis

137

Amino Acids

15.96

Weight (kDa)

9.87

Isoelectric Point (pI)

29.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0026868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55935 AT3G56790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	194
AfaI	GTAC	1 cut(s)	370
AgsI	TTSAA	1 cut(s)	164
AluBI	AGCT	1 cut(s)	242
AluI	AGCT	1 cut(s)	242
Alw26I	GTCTC	1 cut(s)	90
AoxI	GGCC	1 cut(s)	188
AsuC2I	CCSGG	1 cut(s)	38
BarI	GAAGNNNNNNTAC	1 cut(s)	37
BccI	CCATC	1 cut(s)	370
BceAI	ACGGC	2 cut(s)	147, 175
BcnI	CCSGG	1 cut(s)	38
BcoDI	GTCTC	1 cut(s)	90
BfaI	CTAG	3 cut(s)	135, 156, 174
BmcAI	AGTACT	1 cut(s)	370
Bme1390I	CCNGG	1 cut(s)	38
BmrFI	CCNGG	1 cut(s)	38
BmsI	GCATC	4 cut(s)	42, 79, 218, 292
BplI	GAGNNNNNCTC	2 cut(s)	8, 40
BpuMI	CCSGG	1 cut(s)	38
Bsa29I	ATCGAT	1 cut(s)	321
BsaI	GGTCTC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	37, 279
BseCI	ATCGAT	1 cut(s)	321
BseDI	CCNNGG	2 cut(s)	37, 279
BseGI	GGATG	2 cut(s)	33, 307
Bsh1285I	CGRYCG	1 cut(s)	46
BshFI	GGCC	1 cut(s)	190
BshVI	ATCGAT	1 cut(s)	321
BsiEI	CGRYCG	1 cut(s)	46
BsiSI	CCGG	1 cut(s)	37
BslFI	GGGAC	3 cut(s)	142, 383, 404
BsmAI	GTCTC	1 cut(s)	90
BsmFI	GGGAC	3 cut(s)	142, 383, 404
BsnI	GGCC	1 cut(s)	190
Bso31I	GGTCTC	1 cut(s)	90
Bsp143I	GATC	2 cut(s)	43, 357
BspANI	GGCC	1 cut(s)	190
BspDI	ATCGAT	1 cut(s)	321
BspHI	TCATGA	1 cut(s)	76
BspTNI	GGTCTC	1 cut(s)	90
BssECI	CCNNGG	2 cut(s)	37, 279
BssMI	GATC	2 cut(s)	43, 357
BssNAI	GTATAC	1 cut(s)	195
BssT1I	CCWWGG	1 cut(s)	279
Bst1107I	GTATAC	1 cut(s)	195
Bst6I	CTCTTC	2 cut(s)	114, 307
BstDEI	CTNAG	1 cut(s)	66
BstF5I	GGATG	2 cut(s)	33, 307
BstKTI	GATC	2 cut(s)	46, 360
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	2 cut(s)	43, 357
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	1 cut(s)	39
BstSCI	CCNGG	1 cut(s)	36
BstZ17I	GTATAC	1 cut(s)	195
Bsu15I	ATCGAT	1 cut(s)	321
BsuRI	GGCC	1 cut(s)	190
BsuTUI	ATCGAT	1 cut(s)	321
BtsCI	GGATG	2 cut(s)	33, 307
CciI	TCATGA	1 cut(s)	76
ClaI	ATCGAT	1 cut(s)	321
CseI	GACGC	1 cut(s)	334
Csp6I	GTAC	1 cut(s)	369
CviAII	CATG	1 cut(s)	77
CviJI	RGCY	5 cut(s)	134, 173, 190, 242, 285
CviKI_1	RGCY	5 cut(s)	134, 173, 190, 242, 285
CviQI	GTAC	1 cut(s)	369
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	2 cut(s)	45, 359
DpnII	GATC	2 cut(s)	43, 357
Eam1104I	CTCTTC	2 cut(s)	114, 307
EarI	CTCTTC	2 cut(s)	114, 307
Eco130I	CCWWGG	1 cut(s)	279
Eco31I	GGTCTC	1 cut(s)	90
EcoT14I	CCWWGG	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	1 cut(s)	80
FaiI	YATR	4 cut(s)	78, 195, 270, 366
FaqI	GGGAC	3 cut(s)	142, 383, 404
FatI	CATG	1 cut(s)	76
FblI	GTMKAC	1 cut(s)	194
FokI	GGATG	2 cut(s)	20, 314
FspBI	CTAG	3 cut(s)	135, 156, 174
HaeIII	GGCC	1 cut(s)	190
HapII	CCGG	1 cut(s)	37
HgaI	GACGC	1 cut(s)	334
Hin1II	CATG	1 cut(s)	80
HpaII	CCGG	1 cut(s)	37
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188I	TCNGA	2 cut(s)	214, 408
Hpy188III	TCNNGA	4 cut(s)	47, 77, 89, 257
Hpy8I	GTNNAC	1 cut(s)	195
HpyAV	CCTTC	2 cut(s)	7, 86
HpyCH4V	TGCA	2 cut(s)	209, 305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	39
HpyF3I	CTNAG	1 cut(s)	66
Hsp92II	CATG	1 cut(s)	80
Kzo9I	GATC	2 cut(s)	43, 357
LpnPI	CCDG	3 cut(s)	50, 210, 242
LweI	GCATC	4 cut(s)	42, 79, 218, 292
MaeI	CTAG	3 cut(s)	135, 156, 174
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	2 cut(s)	45, 359
MboI	GATC	2 cut(s)	43, 357
MboII	GAAGA	4 cut(s)	128, 131, 176, 324
MluCI	AATT	1 cut(s)	231
MnlI	CCTC	2 cut(s)	75, 96
MseI	TTAA	2 cut(s)	246, 381
MslI	CAYNNNNRTG	2 cut(s)	75, 333
MspI	CCGG	1 cut(s)	37
MspR9I	CCNGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	39
NciI	CCSGG	1 cut(s)	38
NdeII	GATC	2 cut(s)	43, 357
NlaIII	CATG	1 cut(s)	80
NmuCI	GTSAC	1 cut(s)	346
PagI	TCATGA	1 cut(s)	76
PflFI	GACNNNGTC	1 cut(s)	395
Ple19I	CGATCG	1 cut(s)	46
PsyI	GACNNNGTC	1 cut(s)	395
PvuI	CGATCG	1 cut(s)	46
RsaI	GTAC	1 cut(s)	370
RsaNI	GTAC	1 cut(s)	369
RseI	CAYNNNNRTG	2 cut(s)	75, 333
SaqAI	TTAA	2 cut(s)	246, 381
Sau3AI	GATC	2 cut(s)	43, 357
ScaI	AGTACT	1 cut(s)	370
ScrFI	CCNGG	1 cut(s)	38
SetI	ASST	5 cut(s)	86, 97, 161, 179, 244
SfaNI	GCATC	4 cut(s)	42, 79, 218, 292
SmiMI	CAYNNNNRTG	2 cut(s)	75, 333
Sse9I	AATT	1 cut(s)	231
SspI	AATATT	1 cut(s)	385
SspMI	CTAG	3 cut(s)	135, 156, 174
StyD4I	CCNGG	1 cut(s)	36
StyI	CCWWGG	1 cut(s)	279
TaqI	TCGA	1 cut(s)	321
TasI	AATT	1 cut(s)	231
TatI	WGTACW	1 cut(s)	368
Tru1I	TTAA	2 cut(s)	246, 381
Tru9I	TTAA	2 cut(s)	246, 381
TseFI	GTSAC	1 cut(s)	346
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	1 cut(s)	339
TspGWI	ACGGA	1 cut(s)	345
Tth111I	GACNNNGTC	1 cut(s)	395
XmiI	GTMKAC	1 cut(s)	194
XspI	CTAG	3 cut(s)	135, 156, 174
ZrmI	AGTACT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.