AT3G56790

mRNA splicing, via spliceosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0026868
Physical Location & Seq
Reverse (-)
21033777 .. 21034455
679 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G56790.1

Sequence Viewer

Length: 621 bp
ATGGATAACAAGAAGCAGAGATATTCCAGGAGCATCCGTGACGATCGTGATGAGAGAGATAGGACTAAGCATCATCATGAGAGGTCTCACGAAGGAAGTAAGAGGAAAGATAGATCAGAGGAAGAGAATGGGGCGGCTAGGACGACAAACAAGAGTTCTAGGTTTGAAGATGTAGCTAGGTTTGAGAAAAGGCCGTATACTTGTTCTATTGCATCGGACACTACTTCTAGTCAAATCCTTGAAGCTGTTAAACGATTTCAGGAGCTGGCAATAGATACGGCTGTTGCACATAAACAGACCAAGGGCTTTTTTCTGCGTGTAGATGTACTTGGAAGAGAAATAGATGAGTATGGGCATGTGATTAATCTTAGTACATTGATGGTTAACAACAACAAACACAAGAAAGATGTTTTTCAGAATATTCTTAAACCTCCCCAACCTTTTAAATTGACAAAGAAGGAAGAGAAGAAACTGCAAACTCTAAGGCGTGTGGCAAAAGAAAAGGAGAAACAGAAGATGATTAGACAAGCGTTGTTTGAACCACAAAAATCAAAGGTGAAATTGAGCAACCTAATGAAGGTTCTTGCGTCTGAATTAGCAACCCAAGACTTCTTCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0002177 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005737 GO:0005813 GO:0005815 GO:0005829 GO:0005856 GO:0006139 GO:0006355 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008092 GO:0008150 GO:0008152 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010921 GO:0015030 GO:0015630 GO:0015631 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019220 GO:0019222 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0031326 GO:0031935 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0034622 GO:0034641 GO:0035303 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044030 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045292 GO:0046483 GO:0046540 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051174 GO:0051252 GO:0051336 GO:0060255 GO:0060968 GO:0061458 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0070840 GO:0071005 GO:0071011 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1902275 GO:1903506 GO:1990904 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
DUF1115 LRR_4 LRR_9 PRP3 PWI

Protein Analysis

206

Amino Acids

24.2

Weight (kDa)

9.88

Isoelectric Point (pI)

52.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRP3 PF08572 123 - 202 1.3e-12 pre-mRNA processing factor 3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0026868)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G55935 AT3G56790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 197
AciI CCGC 1 cut(s) 134
AfaI GTAC 2 cut(s) 327, 373
AfiI CCNNNNNNNGG 1 cut(s) 577
AgsI TTSAA 3 cut(s) 167, 242, 539
AjnI CCWGG 1 cut(s) 26
AluBI AGCT 3 cut(s) 176, 245, 265
AluI AGCT 3 cut(s) 176, 245, 265
Alw26I GTCTC 1 cut(s) 90
AlwNI CAGNNNCTG 1 cut(s) 265
AoxI GGCC 1 cut(s) 191
AseI ATTAAT 1 cut(s) 363
AsuHPI GGTGA 1 cut(s) 568
BaeI ACNNNNGTAYC 2 cut(s) 267, 300
BccI CCATC 1 cut(s) 373
BceAI ACGGC 2 cut(s) 178, 294
BciT130I CCWGG 1 cut(s) 28
BcoDI GTCTC 1 cut(s) 90
BfaI CTAG 4 cut(s) 138, 159, 177, 228
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
Bme1390I CCNGG 1 cut(s) 28
BmrFI CCNGG 1 cut(s) 28
BmsI GCATC 3 cut(s) 42, 79, 221
BsaI GGTCTC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 300
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
Bsc4I CCNNNNNNNGG 1 cut(s) 577
BseBI CCWGG 1 cut(s) 28
BseDI CCNNGG 1 cut(s) 300
BseGI GGATG 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 577
Bsh1285I CGRYCG 1 cut(s) 46
BshFI GGCC 1 cut(s) 193
BsiEI CGRYCG 1 cut(s) 46
BslI CCNNNNNNNGG 1 cut(s) 577
BsmAI GTCTC 1 cut(s) 90
BsnI GGCC 1 cut(s) 193
Bso31I GGTCTC 1 cut(s) 90
Bsp143I GATC 2 cut(s) 43, 113
BspACI CCGC 1 cut(s) 134
BspANI GGCC 1 cut(s) 193
BspHI TCATGA 1 cut(s) 76
BspTNI GGTCTC 1 cut(s) 90
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 2 cut(s) 43, 113
BssNAI GTATAC 1 cut(s) 198
BssT1I CCWWGG 1 cut(s) 300
Bst1107I GTATAC 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 28
Bst6I CTCTTC 3 cut(s) 117, 328, 456
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 3 cut(s) 66, 368, 482
BstENI CCTNNNNNAGG 1 cut(s) 575
BstF5I GGATG 1 cut(s) 33
BstKTI GATC 2 cut(s) 46, 116
BstMAI GTCTC 1 cut(s) 90
BstMBI GATC 2 cut(s) 43, 113
BstMCI CGRYCG 1 cut(s) 46
BstNI CCWGG 1 cut(s) 28
BstNSI RCATGY 1 cut(s) 359
BstSCI CCNGG 1 cut(s) 26
BstZ17I GTATAC 1 cut(s) 198
BsuRI GGCC 1 cut(s) 193
BtsCI GGATG 1 cut(s) 33
Cac8I GCNNGC 1 cut(s) 267
CaiI CAGNNNCTG 1 cut(s) 265
CciI TCATGA 1 cut(s) 76
CseI GACGC 1 cut(s) 576
Csp6I GTAC 2 cut(s) 326, 372
CviAII CATG 2 cut(s) 77, 356
CviJI RGCY 7 cut(s) 137, 176, 193, 245, 265, 281, 306
CviKI_1 RGCY 7 cut(s) 137, 176, 193, 245, 265, 281, 306
CviQI GTAC 2 cut(s) 326, 372
DdeI CTNAG 3 cut(s) 66, 368, 482
DpnI GATC 2 cut(s) 45, 115
DpnII GATC 2 cut(s) 43, 113
DraI TTTAAA 1 cut(s) 445
Eam1104I CTCTTC 3 cut(s) 117, 328, 456
EarI CTCTTC 3 cut(s) 117, 328, 456
Eco130I CCWWGG 1 cut(s) 300
Eco31I GGTCTC 1 cut(s) 90
EcoNI CCTNNNNNAGG 1 cut(s) 575
EcoRII CCWGG 1 cut(s) 26
EcoT14I CCWWGG 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 300
FaeI CATG 2 cut(s) 80, 359
FaiI YATR 6 cut(s) 78, 198, 291, 351, 357, 619
FatI CATG 2 cut(s) 76, 355
FblI GTMKAC 1 cut(s) 197
Fnu4HI GCNGC 1 cut(s) 135
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 1 cut(s) 135
FspBI CTAG 4 cut(s) 138, 159, 177, 228
GluI GCNGC 1 cut(s) 135
HaeIII GGCC 1 cut(s) 193
HgaI GACGC 1 cut(s) 576
Hin1II CATG 2 cut(s) 80, 359
HincII GTYRAC 1 cut(s) 385
HindII GTYRAC 1 cut(s) 385
HpaI GTTAAC 1 cut(s) 385
HphI GGTGA 1 cut(s) 568
Hpy166II GTNNAC 2 cut(s) 198, 385
Hpy188I TCNGA 4 cut(s) 118, 217, 417, 592
Hpy188III TCNNGA 4 cut(s) 47, 77, 89, 260
Hpy8I GTNNAC 2 cut(s) 198, 385
HpyAV CCTTC 3 cut(s) 86, 451, 571
HpyCH4V TGCA 3 cut(s) 212, 287, 475
HpyF3I CTNAG 3 cut(s) 66, 368, 482
Hsp92II CATG 2 cut(s) 80, 359
KspAI GTTAAC 1 cut(s) 385
Kzo9I GATC 2 cut(s) 43, 113
LmnI GCTCC 2 cut(s) 30, 262
LpnPI CCDG 4 cut(s) 13, 40, 245, 251
LweI GCATC 3 cut(s) 42, 79, 221
MaeI CTAG 4 cut(s) 138, 159, 177, 228
MaeIII GTNAC 1 cut(s) 38
MalI GATC 2 cut(s) 45, 115
MboI GATC 2 cut(s) 43, 113
MboII GAAGA 7 cut(s) 134, 179, 345, 473, 478, 526, 604
MluCI AATT 3 cut(s) 446, 560, 593
MnlI CCTC 4 cut(s) 75, 96, 112, 441
MseI TTAA 5 cut(s) 249, 363, 384, 426, 444
MslI CAYNNNNRTG 1 cut(s) 75
MspR9I CCNGG 1 cut(s) 28
MvaI CCWGG 1 cut(s) 28
NdeII GATC 2 cut(s) 43, 113
NlaIII CATG 2 cut(s) 80, 359
NmuCI GTSAC 1 cut(s) 38
NspI RCATGY 1 cut(s) 359
PagI TCATGA 1 cut(s) 76
PfoI TCCNGGA 1 cut(s) 26
PkrI GCNGC 1 cut(s) 136
Ple19I CGATCG 1 cut(s) 46
PshBI ATTAAT 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 26
PspGI CCWGG 1 cut(s) 26
PstNI CAGNNNCTG 1 cut(s) 265
PvuI CGATCG 1 cut(s) 46
RsaI GTAC 2 cut(s) 327, 373
RsaNI GTAC 2 cut(s) 326, 372
RseI CAYNNNNRTG 1 cut(s) 75
SaqAI TTAA 5 cut(s) 249, 363, 384, 426, 444
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 2 cut(s) 43, 113
ScrFI CCNGG 1 cut(s) 28
SfaNI GCATC 3 cut(s) 42, 79, 221
SmiMI CAYNNNNRTG 1 cut(s) 75
Sse9I AATT 3 cut(s) 446, 560, 593
SsiI CCGC 1 cut(s) 134
SspI AATATT 1 cut(s) 421
SspMI CTAG 4 cut(s) 138, 159, 177, 228
StyD4I CCNGG 1 cut(s) 26
StyI CCWWGG 1 cut(s) 300
TasI AATT 3 cut(s) 446, 560, 593
TatI WGTACW 2 cut(s) 325, 371
TauI GCSGC 1 cut(s) 137
Tru1I TTAA 5 cut(s) 249, 363, 384, 426, 444
Tru9I TTAA 5 cut(s) 249, 363, 384, 426, 444
TseFI GTSAC 1 cut(s) 38
Tsp45I GTSAC 1 cut(s) 38
TspDTI ATGAA 1 cut(s) 590
TspGWI ACGGA 1 cut(s) 26
VspI ATTAAT 1 cut(s) 363
XagI CCTNNNNNAGG 1 cut(s) 575
XceI RCATGY 1 cut(s) 359
XmiI GTMKAC 1 cut(s) 197
XspI CTAG 4 cut(s) 138, 159, 177, 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.