AT3G56520

defense response to fungus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0026748
Physical Location & Seq
Reverse (-)
20947107 .. 20947731
625 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G56520.1

Sequence Viewer

Length: 528 bp
ATGGAGCCAACACACAGAGCTTTGCCCGTAGGATTCAGGTTTCGTTCTACAAACTGTGAGATTTCAAACTATTTTTTGAAGAAAAAAGCTTTAGGACAACCCATGAAAGCTCGTACGATACCTGAAGAGTGTCATGATATCTTCTCAAGACATCCGCATGATCTGCCTGGTTATCCAAGTGAAGAACATTGGTACTATTTTTGCAGAAAACGTGACAACCAAGTTACTAGTAACTCTCATAATCTCTGGACACCAATCGGAGAAGAAACCAATGTGCTAGATCCAAAGAATAATGATGCATTAGTTGGTATTAAGCGTCGGTTTACTCTTATTGCGCAAGAAGAAGAAGAATCTGATAATATTTGTTTATCTGATGATGAAGAAGCTTTAAAGTATAATTGGTTCATGGATGAAATTAGCCTCCCACAAACAGTAGCGAATACTGATTGGGTTTTATGCCATATTTTTGGCAAGAAGACTAAACCCGAAACTACTGATTTGTCCACAATCGATTCCGAATCCGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ENT NAM

Protein Analysis

175

Amino Acids

20.38

Weight (kDa)

5.17

Isoelectric Point (pI)

60.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 140 1.7e-18 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0026748)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56520 AT5G41090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 336
AciI CCGC 1 cut(s) 155
AclWI GGATC 1 cut(s) 275
AcuI CTGAAG 1 cut(s) 144
AfaI GTAC 2 cut(s) 115, 194
AgsI TTSAA 2 cut(s) 66, 79
AhlI ACTAGT 1 cut(s) 227
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 4 cut(s) 20, 89, 110, 386
AluI AGCT 4 cut(s) 20, 89, 110, 386
AlwI GGATC 1 cut(s) 275
AspLEI GCGC 1 cut(s) 337
BbsI GAAGAC 1 cut(s) 482
BciT130I CCWGG 1 cut(s) 168
BcuI ACTAGT 1 cut(s) 227
BfaI CTAG 2 cut(s) 228, 278
Bme1390I CCNGG 1 cut(s) 168
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 168
BmsI GCATC 1 cut(s) 286
BpiI GAAGAC 1 cut(s) 482
BpuEI CTTGAG 1 cut(s) 130
Bsa29I ATCGAT 1 cut(s) 510
BseBI CCWGG 1 cut(s) 168
BseCI ATCGAT 1 cut(s) 510
BseGI GGATG 2 cut(s) 151, 415
BshVI ATCGAT 1 cut(s) 510
BsiWI CGTACG 1 cut(s) 113
Bsp143I GATC 2 cut(s) 160, 280
BspACI CCGC 1 cut(s) 155
BspDI ATCGAT 1 cut(s) 510
BspHI TCATGA 1 cut(s) 133
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 275
BssMI GATC 2 cut(s) 160, 280
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 2 cut(s) 56, 433
Bst6I CTCTTC 1 cut(s) 120
BstAPI GCANNNNNTGC 1 cut(s) 163
BstF5I GGATG 2 cut(s) 151, 415
BstHHI GCGC 1 cut(s) 337
BstKTI GATC 2 cut(s) 163, 283
BstMBI GATC 2 cut(s) 160, 280
BstMWI GCNNNNNNNGC 1 cut(s) 163
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 166
BstV2I GAAGAC 1 cut(s) 482
BstX2I RGATCY 1 cut(s) 280
BstXI CCANNNNNNTGG 1 cut(s) 467
BstYI RGATCY 1 cut(s) 280
Bsu15I ATCGAT 1 cut(s) 510
BsuTUI ATCGAT 1 cut(s) 510
BtsCI GGATG 2 cut(s) 151, 415
CciI TCATGA 1 cut(s) 133
CfoI GCGC 1 cut(s) 337
ClaI ATCGAT 1 cut(s) 510
CseI GACGC 1 cut(s) 305
Csp6I GTAC 2 cut(s) 114, 193
CviAII CATG 4 cut(s) 103, 134, 158, 406
CviJI RGCY 6 cut(s) 7, 20, 89, 110, 386, 420
CviKI_1 RGCY 6 cut(s) 7, 20, 89, 110, 386, 420
CviQI GTAC 2 cut(s) 114, 193
DpnI GATC 2 cut(s) 162, 282
DpnII GATC 2 cut(s) 160, 280
DraI TTTAAA 1 cut(s) 390
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco32I GATATC 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 144
EcoRII CCWGG 1 cut(s) 166
EcoRV GATATC 1 cut(s) 139
EcoT22I ATGCAT 1 cut(s) 301
FaeI CATG 4 cut(s) 106, 137, 161, 409
FaiI YATR 8 cut(s) 104, 135, 159, 240, 396, 407, 457, 462
FatI CATG 4 cut(s) 102, 133, 157, 405
FokI GGATG 2 cut(s) 138, 422
FspBI CTAG 2 cut(s) 228, 278
FspI TGCGCA 1 cut(s) 336
GlaI GCGC 1 cut(s) 336
HgaI GACGC 1 cut(s) 305
HhaI GCGC 1 cut(s) 337
Hin1II CATG 4 cut(s) 106, 137, 161, 409
Hin6I GCGC 1 cut(s) 335
HinP1I GCGC 1 cut(s) 335
HindIII AAGCTT 2 cut(s) 87, 384
HinfI GANTC 4 cut(s) 33, 350, 512, 518
Hpy166II GTNNAC 2 cut(s) 324, 504
Hpy188I TCNGA 5 cut(s) 260, 355, 373, 517, 523
Hpy188III TCNNGA 3 cut(s) 134, 147, 247
Hpy8I GTNNAC 2 cut(s) 324, 504
Hpy99I CGWCG 1 cut(s) 321
HpyCH4III ACNGT 2 cut(s) 56, 433
HpyCH4IV ACGT 1 cut(s) 211
HpyCH4V TGCA 2 cut(s) 204, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 163
HpySE526I ACGT 1 cut(s) 211
Hsp92II CATG 4 cut(s) 106, 137, 161, 409
HspAI GCGC 1 cut(s) 335
Kzo9I GATC 2 cut(s) 160, 280
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 5 cut(s) 22, 135, 153, 180, 232
LweI GCATC 1 cut(s) 286
MaeI CTAG 2 cut(s) 228, 278
MaeII ACGT 1 cut(s) 211
MaeIII GTNAC 3 cut(s) 212, 223, 230
MalI GATC 2 cut(s) 162, 282
MboI GATC 2 cut(s) 160, 280
MflI RGATCY 1 cut(s) 280
MluCI AATT 2 cut(s) 397, 414
MnlI CCTC 1 cut(s) 431
Mph1103I ATGCAT 1 cut(s) 301
MseI TTAA 2 cut(s) 312, 389
MslI CAYNNNNRTG 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 1 cut(s) 163
NdeII GATC 2 cut(s) 160, 280
NlaIII CATG 4 cut(s) 106, 137, 161, 409
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 212
NsbI TGCGCA 1 cut(s) 336
NsiI ATGCAT 1 cut(s) 301
PagI TCATGA 1 cut(s) 133
PfeI GAWTC 4 cut(s) 33, 350, 512, 518
Pfl23II CGTACG 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PspLI CGTACG 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 6
PsrI GAACNNNNNNTAC 2 cut(s) 386, 418
PsuI RGATCY 1 cut(s) 280
RsaI GTAC 2 cut(s) 115, 194
RsaNI GTAC 2 cut(s) 114, 193
RseI CAYNNNNRTG 1 cut(s) 156
SaqAI TTAA 2 cut(s) 312, 389
Sau3AI GATC 2 cut(s) 160, 280
ScrFI CCNGG 1 cut(s) 168
SetI ASST 7 cut(s) 22, 41, 91, 112, 124, 214, 388
SfaNI GCATC 1 cut(s) 286
SmiMI CAYNNNNRTG 1 cut(s) 156
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
SpeI ACTAGT 1 cut(s) 227
Sse9I AATT 2 cut(s) 397, 414
SsiI CCGC 1 cut(s) 155
SspI AATATT 1 cut(s) 361
SspMI CTAG 2 cut(s) 228, 278
StyD4I CCNGG 1 cut(s) 166
TaaI ACNGT 2 cut(s) 56, 433
TaiI ACGT 1 cut(s) 214
TaqI TCGA 1 cut(s) 510
TasI AATT 2 cut(s) 397, 414
TfiI GAWTC 4 cut(s) 33, 350, 512, 518
Tru1I TTAA 2 cut(s) 312, 389
Tru9I TTAA 2 cut(s) 312, 389
TseFI GTSAC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 4 cut(s) 119, 393, 394, 426
XspI CTAG 2 cut(s) 228, 278
Zsp2I ATGCAT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.