AT5G41090

defense response to fungus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0026748
Physical Location & Seq
Forward (+)
16445655 .. 16446673
1019 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G41090.1

Sequence Viewer

Length: 639 bp
ATGGGCCCAACATACAGAGCTTTGCCAGTAGGTATGAGGTTTCGTCCTTCAGATTTGGAGTTGGCTGTTTACTTTTTGATCAAGAAAGCTTTAGGACTTCCCATGAAAGCTCTTACTGTGCCCGACGAATGTAATGATATCTTCTCAACACATCCTCGCGACTTGCCTGGCTATGGAAGCGAAGAGCATTGGTACTTCTACTGCAAGAAACCCAAGAATCAAGTTACTAGAACGAAATCTTATAACCTCTGGATACCAACGGGAGAAAAAACTGATGTGTTAGATCCAAAGAAGAATGGCGGCGAATTAGTCGGTATCAAGCATTCGTTTACTTTCATTGAGAACGAAGAAGAAGAAGAATCTGATAACAAGAACGGCGATGAAGAAGAACCTCCACAATGCAATTGGTTCTTGGATGAAATCAGCCTCCCATTGACAGTTGTGGATACTGATTGGACTCTGTGTCATATCTTTTACGAGAAGGTTAAACCTGAATTTGGTAATTTGCATATAGTCGAATCTGAATCCGAATCCGAAGAAGAAGAAGAAGATGAAAGTGTTGATAAGCCTGCAGAGAGTTTGGATAGTGTTAAAGAGAAAGATGGAACTGTTCTTCCTCCACCTCCTGCTACACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ENT NAM

Protein Analysis

212

Amino Acids

24.17

Weight (kDa)

4.52

Isoelectric Point (pI)

54.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 140 3.8e-19 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0026748)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56520 AT5G41090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
AccII CGCG 1 cut(s) 159
AciI CCGC 1 cut(s) 300
AclWI GGATC 1 cut(s) 278
AcsI RAATTY 1 cut(s) 494
AcuI CTGAAG 1 cut(s) 33
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 2 cut(s) 173, 497
AhdI GACNNNNNGTC 1 cut(s) 462
AjnI CCWGG 1 cut(s) 166
AloI GAACNNNNNNTCC 2 cut(s) 598, 630
AluBI AGCT 3 cut(s) 20, 89, 110
AluI AGCT 3 cut(s) 20, 89, 110
AlwI GGATC 1 cut(s) 278
AoxI GGCC 1 cut(s) 4
ApaI GGGCCC 1 cut(s) 8
ApoI RAATTY 1 cut(s) 494
AspS9I GGNCC 2 cut(s) 4, 5
BaeGI GKGCMC 2 cut(s) 8, 123
BanII GRGCYC 1 cut(s) 8
BccI CCATC 1 cut(s) 596
BceAI ACGGC 1 cut(s) 391
BciT130I CCWGG 1 cut(s) 168
BciVI GTATCC 2 cut(s) 246, 439
BclI TGATCA 1 cut(s) 78
BfaI CTAG 1 cut(s) 228
BfmI CTRYAG 1 cut(s) 570
BfuI GTATCC 2 cut(s) 246, 439
BisI GCNGC 1 cut(s) 301
BlsI GCNGC 1 cut(s) 302
Bme1390I CCNGG 1 cut(s) 168
BmeRI GACNNNNNGTC 1 cut(s) 462
BmgT120I GGNCC 2 cut(s) 4, 5
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 168
Bsc4I CCNNNNNNNGG 2 cut(s) 173, 497
Bse1I ACTGG 1 cut(s) 26
BseBI CCWGG 1 cut(s) 168
BseGI GGATG 2 cut(s) 151, 421
BseLI CCNNNNNNNGG 2 cut(s) 173, 497
BseNI ACTGG 1 cut(s) 26
BseSI GKGCMC 2 cut(s) 8, 123
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 1 cut(s) 6
BslI CCNNNNNNNGG 2 cut(s) 173, 497
BsmI GAATGC 1 cut(s) 322
BsnI GGCC 1 cut(s) 6
Bsp120I GGGCCC 1 cut(s) 4
Bsp1286I GDGCHC 2 cut(s) 8, 123
Bsp143I GATC 2 cut(s) 78, 283
Bsp68I TCGCGA 1 cut(s) 159
BspACI CCGC 1 cut(s) 300
BspANI GGCC 1 cut(s) 6
BspFNI CGCG 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 574
BspPI GGATC 1 cut(s) 278
BspQI GCTCTTC 1 cut(s) 177
BsrI ACTGG 1 cut(s) 26
BssMI GATC 2 cut(s) 78, 283
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 3 cut(s) 118, 439, 610
Bst6I CTCTTC 1 cut(s) 177
BstC8I GCNNGC 1 cut(s) 570
BstDEI CTNAG 1 cut(s) 636
BstF5I GGATG 2 cut(s) 151, 421
BstFNI CGCG 1 cut(s) 159
BstKTI GATC 2 cut(s) 81, 286
BstMBI GATC 2 cut(s) 78, 283
BstMWI GCNNNNNNNGC 1 cut(s) 177
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 166
BstSFI CTRYAG 1 cut(s) 570
BstSLI GKGCMC 2 cut(s) 8, 123
BstUI CGCG 1 cut(s) 159
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BsuI GTATCC 2 cut(s) 246, 439
BsuRI GGCC 1 cut(s) 6
BtgZI GCGATG 1 cut(s) 393
BtsCI GGATG 2 cut(s) 151, 421
BtuMI TCGCGA 1 cut(s) 159
Cac8I GCNNGC 1 cut(s) 570
Cfr13I GGNCC 2 cut(s) 4, 5
Csp6I GTAC 1 cut(s) 193
CviAII CATG 1 cut(s) 103
CviJI RGCY 8 cut(s) 6, 20, 65, 89, 110, 171, 426, 568
CviKI_1 RGCY 8 cut(s) 6, 20, 65, 89, 110, 171, 426, 568
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 1 cut(s) 636
DpnI GATC 2 cut(s) 80, 285
DpnII GATC 2 cut(s) 78, 283
DriI GACNNNNNGTC 1 cut(s) 462
Eam1104I CTCTTC 1 cut(s) 177
Eam1105I GACNNNNNGTC 1 cut(s) 462
EarI CTCTTC 1 cut(s) 177
Eco24I GRGCYC 1 cut(s) 8
Eco32I GATATC 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 166
EcoRV GATATC 1 cut(s) 139
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 1 cut(s) 106
FaiI YATR 8 cut(s) 13, 35, 104, 174, 243, 468, 510, 512
FatI CATG 1 cut(s) 102
FbaI TGATCA 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 301
FokI GGATG 2 cut(s) 138, 428
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 301
FspBI CTAG 1 cut(s) 228
GluI GCNGC 1 cut(s) 301
HaeIII GGCC 1 cut(s) 6
Hin1II CATG 1 cut(s) 106
HindIII AAGCTT 1 cut(s) 87
HinfI GANTC 6 cut(s) 217, 359, 457, 518, 524, 530
Hpy166II GTNNAC 2 cut(s) 70, 330
Hpy188I TCNGA 5 cut(s) 52, 364, 523, 529, 535
Hpy188III TCNNGA 3 cut(s) 82, 158, 250
Hpy8I GTNNAC 2 cut(s) 70, 330
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 2 cut(s) 57, 475
HpyCH4III ACNGT 3 cut(s) 118, 439, 610
HpyCH4V TGCA 4 cut(s) 204, 402, 508, 572
HpyF10VI GCNNNNNNNGC 1 cut(s) 177
HpyF3I CTNAG 1 cut(s) 636
Hsp92II CATG 1 cut(s) 106
Ksp22I TGATCA 1 cut(s) 78
Kzo9I GATC 2 cut(s) 78, 283
LguI GCTCTTC 1 cut(s) 177
LpnPI CCDG 6 cut(s) 39, 153, 180, 235, 504, 582
MaeI CTAG 1 cut(s) 228
MaeIII GTNAC 1 cut(s) 223
MalI GATC 2 cut(s) 80, 285
MboI GATC 2 cut(s) 78, 283
MfeI CAATTG 1 cut(s) 403
MflI RGATCY 1 cut(s) 283
MhlI GDGCHC 2 cut(s) 8, 123
MluCI AATT 4 cut(s) 305, 403, 494, 502
MlyI GAGTC 1 cut(s) 451
MnlI CCTC 7 cut(s) 30, 165, 257, 402, 437, 627, 633
MseI TTAA 2 cut(s) 486, 591
MspR9I CCNGG 1 cut(s) 168
MunI CAATTG 1 cut(s) 403
Mva1269I GAATGC 1 cut(s) 322
MvaI CCWGG 1 cut(s) 168
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 1 cut(s) 177
NdeII GATC 2 cut(s) 78, 283
NlaIII CATG 1 cut(s) 106
NlaIV GGNNCC 1 cut(s) 6
NruI TCGCGA 1 cut(s) 159
PciSI GCTCTTC 1 cut(s) 177
PctI GAATGC 1 cut(s) 322
PfeI GAWTC 5 cut(s) 217, 359, 518, 524, 530
PkrI GCNGC 1 cut(s) 302
PleI GAGTC 1 cut(s) 451
PpsI GAGTC 1 cut(s) 451
PsiI TTATAA 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 1 cut(s) 6
PspOMI GGGCCC 1 cut(s) 4
PspPI GGNCC 2 cut(s) 4, 5
PstI CTGCAG 1 cut(s) 574
PsuI RGATCY 1 cut(s) 283
RruI TCGCGA 1 cut(s) 159
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
SapI GCTCTTC 1 cut(s) 177
SaqAI TTAA 2 cut(s) 486, 591
SatI GCNGC 1 cut(s) 301
Sau3AI GATC 2 cut(s) 78, 283
Sau96I GGNCC 2 cut(s) 4, 5
SchI GAGTC 1 cut(s) 451
ScrFI CCNGG 1 cut(s) 168
SduI GDGCHC 2 cut(s) 8, 123
SfcI CTRYAG 1 cut(s) 570
Sse9I AATT 4 cut(s) 305, 403, 494, 502
SsiI CCGC 1 cut(s) 300
SspMI CTAG 1 cut(s) 228
StyD4I CCNGG 1 cut(s) 166
TaaI ACNGT 3 cut(s) 118, 439, 610
TaqI TCGA 1 cut(s) 516
TasI AATT 4 cut(s) 305, 403, 494, 502
TauI GCSGC 1 cut(s) 303
TfiI GAWTC 5 cut(s) 217, 359, 518, 524, 530
Tru1I TTAA 2 cut(s) 486, 591
Tru9I TTAA 2 cut(s) 486, 591
TspDTI ATGAA 5 cut(s) 119, 325, 396, 432, 567
XapI RAATTY 1 cut(s) 494
XcmI CCANNNNNNNNNTGG 1 cut(s) 402
XspI CTAG 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.