AT3G59430

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0018338
Physical Location & Seq
Reverse (-)
21963832 .. 21967078
3247 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G59430.3

Sequence Viewer

Length: 1356 bp
ATGGTCAGGAAGGAAGATGTGGATTTCTATTGCGGATTTTCAAGGAAAGAGCTTCAGAGTTTATGCAAGAAGTATAATTTGCCTGCCAATAGATCAAGTTCCGATATGGCTGAATCATTGGCTTCTTACTTCGAGAAAAATAATTTGAACCCGGTAAGTTTTGGGGTCCCTGGGAATCAAGATAGTTCAGCGACAACTTCTAGAGCACCAGCGATTAGAACATGGAATGTGAAAAGAGATTCTTATGGTAACAAATTGGATGTACCTAGAGAGGATTATGTTCAAGGTGCAGTGGCTAGAGAACCAGGCATTATCCTTGGGAATAATACACCGTATCAGGAAAGAAATGGAAATGATGGTTTGATTGATTTTACATCTGCTCCTCCTTATATGAGGAAATTGAATGAAAAGGGCCCAACAGCAAACTCCAAGAGAGCAGATTCTCGGCTAGAAAATAGAATGAGAGATGTAGACAGTGGTGATAATCCTAGTTCGTCTTCGTTTGAGTTTCATGTCAGTTTGGAAGAGGGTATTAGCCTTTCAGTTGATCTAAATTTTAATCCATCAGATTGGATCAATAGCATGAGAGATGAGGTCAATGTATGTGATAGCATGCGCCGCAGAAAATCCCCACATTCTGATCTTGGCATTACAGAGTGTAAGAAACAGAAGAGTTCAGGGCAAGACACGGATGGTCATGTAAGGAGAGAATCATCTTTAAGTCCGCCAATGAAAGACAATGCTCACTTACCTTCTGATCACCATCCCAATGGTGAACGATCTCTAGCATCATCTGCCATAGAACCATGCAACAGAATCAAAGAGAGCTCAGACACTTGCAAGGAAAAAAGCGGGCTTAACTTGTCCATACCTGATTCTTCAGGACCTTGCCAGATTGCATCATCTTGTGTCGAATCATATAGTAAAAGCTGCTGTGTAAATCCAGTTGACTTGGACTGTATTATTCCTCCAGGGAAGAAGTTGGCAAGTGAATCTGATATGGTTGCTGCAGAACAGAATCATTCAGCTGGTGATCTCCTTGTAGAAATTCCGAAAAATCCATCCATGGAAAGCTTTCAAATAGTCGGAAACTCAAGTACTGTTATATGTCCACGGGGAGCTGGCTCTGAATTATCATCATCAGAAGCAGAGGCCTATCACTCAAACCAGCCGTGTTCTCCTCGTAAGACCAGTAGATCCTCGACTATCTCTTCTCCAGAGTTCATCATCGATAGAGAGTCTACTAGTTATTCTGAGTCATTCAAGTTCCGTTGCAATGGAGGCAAAAGTTTGCCACCAAACACGGAGGAGCAGGAAAAGAGCGAAGTTTTAAGTGAGCAGGCGCGGTCAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

451

Amino Acids

49.48

Weight (kDa)

5.43

Isoelectric Point (pI)

54.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59430 AT3G59430 AT3G59430 AT3G59430 AT3G59430 AT3G59430 AT3G59430 AT3G59430
malus_domestica MD04G1040900.v1.1
pyrus_communis pycom04g03580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 471, 1241
AccII CGCG 1 cut(s) 1345
AciI CCGC 5 cut(s) 33, 619, 725, 852, 1345
AclWI GGATC 2 cut(s) 581, 1191
AcsI RAATTY 2 cut(s) 553, 1047
AcuI CTGAAG 2 cut(s) 38, 864
AfaI GTAC 2 cut(s) 264, 1099
AgsI TTSAA 6 cut(s) 42, 148, 284, 403, 1079, 1264
AhlI ACTAGT 1 cut(s) 1244
AjnI CCWGG 3 cut(s) 169, 304, 970
AluBI AGCT 6 cut(s) 52, 828, 930, 1028, 1074, 1121
AluI AGCT 6 cut(s) 52, 828, 930, 1028, 1074, 1121
Alw21I GWGCWC 2 cut(s) 208, 830
AlwI GGATC 2 cut(s) 581, 1191
AoxI GGCC 2 cut(s) 412, 1152
ApaI GGGCCC 1 cut(s) 416
ApeKI GCWGC 2 cut(s) 930, 1007
ApoI RAATTY 2 cut(s) 553, 1047
Asp700I GAANNNNTTC 1 cut(s) 1074
AspLEI GCGC 2 cut(s) 618, 1345
AspS9I GGNCC 4 cut(s) 166, 412, 413, 884
AsuC2I CCSGG 1 cut(s) 152
AsuHPI GGTGA 4 cut(s) 491, 752, 785, 1043
AvaII GGWCC 2 cut(s) 166, 884
BaeGI GKGCMC 1 cut(s) 416
BanII GRGCYC 2 cut(s) 416, 830
BbsI GAAGAC 1 cut(s) 489
Bbv12I GWGCWC 2 cut(s) 208, 830
BbvI GCAGC 2 cut(s) 917, 994
BccI CCATC 5 cut(s) 350, 571, 686, 771, 1069
BceAI ACGGC 1 cut(s) 1156
BciT130I CCWGG 3 cut(s) 171, 306, 972
BclI TGATCA 1 cut(s) 757
BcnI CCSGG 1 cut(s) 152
BcuI ACTAGT 1 cut(s) 1244
BfaI CTAG 7 cut(s) 201, 267, 297, 449, 489, 785, 1245
BfmI CTRYAG 1 cut(s) 1008
BisI GCNGC 3 cut(s) 619, 931, 1008
BlsI GCNGC 3 cut(s) 620, 932, 1009
BmcAI AGTACT 1 cut(s) 1099
Bme1390I CCNGG 4 cut(s) 152, 171, 306, 972
Bme18I GGWCC 2 cut(s) 166, 884
BmgT120I GGNCC 4 cut(s) 166, 412, 413, 884
BmiI GGNNCC 3 cut(s) 167, 168, 414
BmrFI CCNGG 4 cut(s) 152, 171, 306, 972
BmsI GCATC 2 cut(s) 797, 908
BpiI GAAGAC 1 cut(s) 489
BpmI CTGGAG 2 cut(s) 954, 1200
BpuEI CTTGAG 1 cut(s) 1078
BpuMI CCSGG 1 cut(s) 152
Bsa29I ATCGAT 1 cut(s) 1230
BsaBI GATNNNNATC 1 cut(s) 762
BsaJI CCNNGG 6 cut(s) 169, 170, 316, 971, 1065, 1112
BsaXI ACNNNNNCTCC 2 cut(s) 364, 394
Bse1I ACTGG 2 cut(s) 944, 1191
Bse3DI GCAATG 1 cut(s) 1282
Bse8I GATNNNNATC 1 cut(s) 762
BseBI CCWGG 3 cut(s) 171, 306, 972
BseCI ATCGAT 1 cut(s) 1230
BseDI CCNNGG 6 cut(s) 169, 170, 316, 971, 1065, 1112
BseGI GGATG 4 cut(s) 265, 697, 763, 1061
BseJI GATNNNNATC 1 cut(s) 762
BseMI GCAATG 1 cut(s) 1282
BseMII CTCAG 2 cut(s) 843, 1245
BseNI ACTGG 2 cut(s) 944, 1191
BseRI GAGGAG 3 cut(s) 372, 1170, 1322
BseSI GKGCMC 1 cut(s) 416
BseXI GCAGC 2 cut(s) 917, 994
BsgI GTGCAG 1 cut(s) 309
Bsh1236I CGCG 1 cut(s) 1345
BshFI GGCC 2 cut(s) 414, 1154
BshVI ATCGAT 1 cut(s) 1230
BsiHKAI GWGCWC 2 cut(s) 208, 830
BsiSI CCGG 1 cut(s) 152
BslFI GGGAC 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 152
BsnI GGCC 2 cut(s) 414, 1154
Bsp120I GGGCCC 1 cut(s) 412
Bsp1286I GDGCHC 3 cut(s) 208, 416, 830
Bsp143I GATC 8 cut(s) 92, 547, 573, 640, 757, 779, 1033, 1196
Bsp19I CCATGG 1 cut(s) 1065
BspACI CCGC 5 cut(s) 33, 619, 725, 852, 1345
BspANI GGCC 2 cut(s) 414, 1154
BspCNI CTCAG 2 cut(s) 842, 1246
BspDI ATCGAT 1 cut(s) 1230
BspFNI CGCG 1 cut(s) 1345
BspLI GGNNCC 3 cut(s) 167, 168, 414
BspMAI CTGCAG 1 cut(s) 1012
BspPI GGATC 2 cut(s) 581, 1191
BsrDI GCAATG 1 cut(s) 1282
BsrI ACTGG 2 cut(s) 944, 1191
BssECI CCNNGG 6 cut(s) 169, 170, 316, 971, 1065, 1112
BssMI GATC 8 cut(s) 92, 547, 573, 640, 757, 779, 1033, 1196
BssT1I CCWWGG 2 cut(s) 316, 1065
Bst2UI CCWGG 3 cut(s) 171, 306, 972
Bst4CI ACNGT 4 cut(s) 333, 476, 959, 1102
Bst6I CTCTTC 3 cut(s) 519, 665, 1216
BstAPI GCANNNNNTGC 1 cut(s) 794
BstC8I GCNNGC 5 cut(s) 84, 614, 854, 1123, 1341
BstDEI CTNAG 2 cut(s) 829, 1254
BstDSI CCRYGG 2 cut(s) 1065, 1112
BstF5I GGATG 4 cut(s) 265, 697, 763, 1061
BstFNI CGCG 1 cut(s) 1345
BstHHI GCGC 2 cut(s) 618, 1345
BstKTI GATC 8 cut(s) 95, 550, 576, 643, 760, 782, 1036, 1199
BstMBI GATC 8 cut(s) 92, 547, 573, 640, 757, 779, 1033, 1196
BstMWI GCNNNNNNNGC 3 cut(s) 618, 794, 1281
BstNI CCWGG 3 cut(s) 171, 306, 972
BstNSI RCATGY 1 cut(s) 616
BstSCI CCNGG 4 cut(s) 150, 169, 304, 970
BstSFI CTRYAG 1 cut(s) 1008
BstSLI GKGCMC 1 cut(s) 416
BstUI CGCG 1 cut(s) 1345
BstV1I GCAGC 2 cut(s) 917, 994
BstV2I GAAGAC 1 cut(s) 489
BstX2I RGATCY 1 cut(s) 1196
BstXI CCANNNNNNTGG 2 cut(s) 570, 770
BstYI RGATCY 1 cut(s) 1196
Bsu15I ATCGAT 1 cut(s) 1230
BsuRI GGCC 2 cut(s) 414, 1154
BsuTUI ATCGAT 1 cut(s) 1230
BtgI CCRYGG 2 cut(s) 1065, 1112
BtsCI GGATG 4 cut(s) 265, 697, 763, 1061
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 2 cut(s) 297, 481
Cac8I GCNNGC 5 cut(s) 84, 614, 854, 1123, 1341
CfoI GCGC 2 cut(s) 618, 1345
Cfr13I GGNCC 4 cut(s) 166, 412, 413, 884
ClaI ATCGAT 1 cut(s) 1230
Csp6I GTAC 2 cut(s) 263, 1098
CviAII CATG 7 cut(s) 222, 512, 583, 613, 698, 807, 1066
CviQI GTAC 2 cut(s) 263, 1098
DdeI CTNAG 2 cut(s) 829, 1254
DpnI GATC 8 cut(s) 94, 549, 575, 642, 759, 781, 1035, 1198
DpnII GATC 8 cut(s) 92, 547, 573, 640, 757, 779, 1033, 1196
Eam1104I CTCTTC 3 cut(s) 519, 665, 1216
EarI CTCTTC 3 cut(s) 519, 665, 1216
EciI GGCGGA 1 cut(s) 714
Ecl136II GAGCTC 1 cut(s) 828
Eco130I CCWWGG 2 cut(s) 316, 1065
Eco147I AGGCCT 1 cut(s) 1154
Eco24I GRGCYC 2 cut(s) 416, 830
Eco47I GGWCC 2 cut(s) 166, 884
Eco53kI GAGCTC 1 cut(s) 828
Eco57I CTGAAG 2 cut(s) 38, 864
EcoICRI GAGCTC 1 cut(s) 828
EcoO109I RGGNCCY 3 cut(s) 166, 412, 884
EcoRII CCWGG 3 cut(s) 169, 304, 970
EcoT14I CCWWGG 2 cut(s) 316, 1065
EcoT38I GRGCYC 2 cut(s) 416, 830
ErhI CCWWGG 2 cut(s) 316, 1065
FaeI CATG 7 cut(s) 225, 515, 586, 616, 701, 810, 1069
FalI AAGNNNNNCTT 2 cut(s) 226, 258
FaqI GGGAC 1 cut(s) 152
FatI CATG 7 cut(s) 221, 511, 582, 612, 697, 806, 1065
FauI CCCGC 1 cut(s) 845
FbaI TGATCA 1 cut(s) 757
FblI GTMKAC 2 cut(s) 471, 1241
Fnu4HI GCNGC 3 cut(s) 619, 931, 1008
FokI GGATG 4 cut(s) 272, 704, 750, 1048
FriOI GRGCYC 2 cut(s) 416, 830
Fsp4HI GCNGC 3 cut(s) 619, 931, 1008
FspBI CTAG 7 cut(s) 201, 267, 297, 449, 489, 785, 1245
GlaI GCGC 2 cut(s) 617, 1344
GluI GCNGC 3 cut(s) 619, 931, 1008
GsuI CTGGAG 2 cut(s) 954, 1200
HaeIII GGCC 2 cut(s) 414, 1154
HapII CCGG 1 cut(s) 152
HhaI GCGC 2 cut(s) 618, 1345
Hin1II CATG 7 cut(s) 225, 515, 586, 616, 701, 810, 1069
Hin6I GCGC 2 cut(s) 616, 1343
HinP1I GCGC 2 cut(s) 616, 1343
HincII GTYRAC 1 cut(s) 949
HindII GTYRAC 1 cut(s) 949
HindIII AAGCTT 1 cut(s) 1072
HpaII CCGG 1 cut(s) 152
HphI GGTGA 4 cut(s) 491, 752, 785, 1043
Hpy166II GTNNAC 5 cut(s) 472, 776, 949, 1112, 1242
Hpy188III TCNNGA 7 cut(s) 7, 133, 179, 201, 338, 882, 1217
Hpy8I GTNNAC 5 cut(s) 472, 776, 949, 1112, 1242
HpyAV CCTTC 2 cut(s) 4, 762
HpyCH4III ACNGT 4 cut(s) 333, 476, 959, 1102
HpyCH4V TGCA 7 cut(s) 66, 290, 810, 840, 899, 1010, 1275
HpyF10VI GCNNNNNNNGC 3 cut(s) 618, 794, 1281
HpyF3I CTNAG 2 cut(s) 829, 1254
Hsp92II CATG 7 cut(s) 225, 515, 586, 616, 701, 810, 1069
HspAI GCGC 2 cut(s) 616, 1343
KflI GGGWCCC 1 cut(s) 166
Ksp22I TGATCA 1 cut(s) 757
Kzo9I GATC 8 cut(s) 92, 547, 573, 640, 757, 779, 1033, 1196
LmnI GCTCC 3 cut(s) 385, 1118, 1309
Lsp1109I GCAGC 2 cut(s) 917, 994
LweI GCATC 2 cut(s) 797, 908
MaeI CTAG 7 cut(s) 201, 267, 297, 449, 489, 785, 1245
MaeIII GTNAC 1 cut(s) 248
MalI GATC 8 cut(s) 94, 549, 575, 642, 759, 781, 1035, 1198
MboI GATC 8 cut(s) 92, 547, 573, 640, 757, 779, 1033, 1196
MboII GAAGA 7 cut(s) 26, 489, 536, 682, 870, 988, 1203
MflI RGATCY 1 cut(s) 1196
MhlI GDGCHC 3 cut(s) 208, 416, 830
MluCI AATT 7 cut(s) 76, 142, 254, 398, 553, 1047, 1130
MlyI GAGTC 2 cut(s) 1247, 1265
MmeI TCCRAC 1 cut(s) 1066
MroXI GAANNNNTTC 1 cut(s) 1074
MseI TTAA 4 cut(s) 558, 719, 858, 1331
MslI CAYNNNNRTG 1 cut(s) 768
MspA1I CMGCKG 1 cut(s) 1028
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 4 cut(s) 152, 171, 306, 972
MvaI CCWGG 3 cut(s) 171, 306, 972
MvnI CGCG 1 cut(s) 1345
MwoI GCNNNNNNNGC 3 cut(s) 618, 794, 1281
NciI CCSGG 1 cut(s) 152
NcoI CCATGG 1 cut(s) 1065
NdeII GATC 8 cut(s) 92, 547, 573, 640, 757, 779, 1033, 1196
NlaIII CATG 7 cut(s) 225, 515, 586, 616, 701, 810, 1069
NlaIV GGNNCC 3 cut(s) 167, 168, 414
NmeAIII GCCGAG 1 cut(s) 424
NspI RCATGY 1 cut(s) 616
PaeI GCATGC 1 cut(s) 616
PasI CCCWGGG 1 cut(s) 170
PceI AGGCCT 1 cut(s) 1154
PdmI GAANNNNTTC 1 cut(s) 1074
PkrI GCNGC 3 cut(s) 620, 932, 1009
PleI GAGTC 2 cut(s) 1246, 1264
PpsI GAGTC 2 cut(s) 1246, 1264
PpuMI RGGWCCY 2 cut(s) 166, 884
Psp124BI GAGCTC 1 cut(s) 830
Psp5II RGGWCCY 2 cut(s) 166, 884
Psp6I CCWGG 3 cut(s) 169, 304, 970
PspGI CCWGG 3 cut(s) 169, 304, 970
PspN4I GGNNCC 3 cut(s) 167, 168, 414
PspOMI GGGCCC 1 cut(s) 412
PspPI GGNCC 4 cut(s) 166, 412, 413, 884
PspPPI RGGWCCY 2 cut(s) 166, 884
PstI CTGCAG 1 cut(s) 1012
PsuI RGATCY 1 cut(s) 1196
PvuII CAGCTG 1 cut(s) 1028
RsaI GTAC 2 cut(s) 264, 1099
RsaNI GTAC 2 cut(s) 263, 1098
RseI CAYNNNNRTG 1 cut(s) 768
SacI GAGCTC 1 cut(s) 830
SaqAI TTAA 4 cut(s) 558, 719, 858, 1331
SatI GCNGC 3 cut(s) 619, 931, 1008
Sau3AI GATC 8 cut(s) 92, 547, 573, 640, 757, 779, 1033, 1196
Sau96I GGNCC 4 cut(s) 166, 412, 413, 884
ScaI AGTACT 1 cut(s) 1099
SchI GAGTC 2 cut(s) 1247, 1265
ScrFI CCNGG 4 cut(s) 152, 171, 306, 972
SduI GDGCHC 3 cut(s) 208, 416, 830
SfaNI GCATC 2 cut(s) 797, 908
SfcI CTRYAG 1 cut(s) 1008
SinI GGWCC 2 cut(s) 166, 884
SmiMI CAYNNNNRTG 1 cut(s) 768
SmlI CTYRAG 1 cut(s) 1093
SmoI CTYRAG 1 cut(s) 1093
SpeI ACTAGT 1 cut(s) 1244
SphI GCATGC 1 cut(s) 616
Sse9I AATT 7 cut(s) 76, 142, 254, 398, 553, 1047, 1130
SseBI AGGCCT 1 cut(s) 1154
SsiI CCGC 5 cut(s) 33, 619, 725, 852, 1345
SspMI CTAG 7 cut(s) 201, 267, 297, 449, 489, 785, 1245
SstI GAGCTC 1 cut(s) 830
StuI AGGCCT 1 cut(s) 1154
StyD4I CCNGG 4 cut(s) 150, 169, 304, 970
StyI CCWWGG 2 cut(s) 316, 1065
TaaI ACNGT 4 cut(s) 333, 476, 959, 1102
TaqI TCGA 4 cut(s) 132, 912, 1202, 1230
TasI AATT 7 cut(s) 76, 142, 254, 398, 553, 1047, 1130
TatI WGTACW 1 cut(s) 1097
TauI GCSGC 1 cut(s) 621
Tru1I TTAA 4 cut(s) 558, 719, 858, 1331
Tru9I TTAA 4 cut(s) 558, 719, 858, 1331
TscAI CASTG 2 cut(s) 297, 481
TseI GCWGC 2 cut(s) 930, 1007
TspDTI ATGAA 4 cut(s) 420, 500, 746, 1213
TspGWI ACGGA 3 cut(s) 704, 1259, 1319
TspRI CASTG 2 cut(s) 297, 481
VpaK11BI GGWCC 2 cut(s) 166, 884
XapI RAATTY 2 cut(s) 553, 1047
XbaI TCTAGA 1 cut(s) 200
XceI RCATGY 1 cut(s) 616
XmiI GTMKAC 2 cut(s) 471, 1241
XmnI GAANNNNTTC 1 cut(s) 1074
XspI CTAG 7 cut(s) 201, 267, 297, 449, 489, 785, 1245
ZrmI AGTACT 1 cut(s) 1099
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.