Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0020209

Physical Location & Seq

Genomic Coordinates Forward (+)

414204 .. 416355

Gene Structure 2152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G00960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGAAGGTGGATTTTTTAGTCATAAAGGTTGAAAAACTATCTTCTTTGAGAGTTTTTTATTTTTTTTTATTTTTTTTTGAGAGCAAATATGTCGAAGATCAGAAGATTAAAGATGCAAAATTATTGCAACTTGACTTTGATACCATAAGATTAGCAACTAATGACTTCTCTCCTTACAACCATCTTGGTGAAGGTGGTTTCGGTGCAGTTTATAAGGGCGTCCTTGATTCCGGGGAAGAGATAGCTGTGAAAAGATTGTCAATGAAATCAGGACAAGGAGACAATGAGTTCGTAAACGAAGTCTCATTGGTTGCGAAACTTCAACATCGTAATCTTGTTAGGCTTTTAGGTTTCTGTTTTAAAGGAGAAGAACGACTTCTCATCTATGAGTTCTTTAAGAACACAAGCCTCGAAAAGTTCATATTTGATTCTGATAGAAGAATGATCTTAGATTGGGAAAAACGTTATAGGATAATCTCAGGTGTTGCTCGAGGTCTTCTCTATCTCCATGAAGATTCTCATTTCAAAATTATTCATAGAGATATGAAAGCTAGCAATGTTCTATTGGACGATGCAATGAATCCGAAAATCGCAGATTTTGGGATGGTAAAATTGTTTAATACTGACCAAACAAGTCAGACCATGTTTACAAGCAAAGTTGCAGGAACTTACGGTTACATGGCTCCTGAGTATGCAATGAGTGGGCAATTCTCGGTGAAAACCGACGTATTTAGTTTCGGTGTACTAGTCCTTGAGATCATTAAAGGTAAGAAAAACAATTGGTCTCCGGAAGAACAAAGCTCATTATTCCTCCTTAGCTATGTGTGGAAATGCTGGAGAGAAGGAGAAGTGTTGAACATTGTGGATCCAAGTTTGATTGAAACAAGAGGTCTAAGTGATGAGATCAGGAAATGCATTCACATTGGTTTGTTGTGTGTTCAGGAGAATCCAGGGAGTAGACCAACAATGGCTTCTATTGTTAGAATGCTCAATGCAAATTCTTTCACTTTACCGAGACCCTTGCAACCCGCTTTTTACTCAGGAGTTGTAGACTCATCGTCAAGAGACAACAATCATACAAGAAACCCGCGTATTGCGTCTTTGAATGATGTTACAATTACGGAGTTAGATCCTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAP Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

379

Amino Acids

43.41

Weight (kDa)

7.06

Isoelectric Point (pI)

34.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	59 - 328	9.5e-46	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	60 - 330	3.3e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00960 AT4G00960 AT4G00960 AT4G00960 AT4G00970 AT4G00970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	213
AccI	GTMKAC	2 cut(s)	958, 1050
AccII	CGCG	1 cut(s)	1090
AccIII	TCCGGA	1 cut(s)	787
AciI	CCGC	2 cut(s)	1029, 1088
AclI	AACGTT	1 cut(s)	463
AclWI	GGATC	3 cut(s)	860, 873, 1124
AcsI	RAATTY	1 cut(s)	997
AcyI	GRCGYC	1 cut(s)	219
AfaI	GTAC	1 cut(s)	744
AgsI	TTSAA	6 cut(s)	32, 323, 526, 856, 881, 1105
AhdI	GACNNNNNGTC	1 cut(s)	1057
AhlI	ACTAGT	1 cut(s)	745
AjnI	CCWGG	1 cut(s)	949
AjuI	GAANNNNNNNTTGG	2 cut(s)	955, 987
AluBI	AGCT	4 cut(s)	245, 551, 801, 819
AluI	AGCT	4 cut(s)	245, 551, 801, 819
Alw26I	GTCTC	5 cut(s)	273, 307, 789, 1009, 1059
AlwI	GGATC	3 cut(s)	860, 873, 1124
Ama87I	CYCGRG	1 cut(s)	489
Aor13HI	TCCGGA	1 cut(s)	787
ApoI	RAATTY	1 cut(s)	997
ArsI	GACNNNNNNTTYG	2 cut(s)	272, 304
Asp700I	GAANNNNTTC	1 cut(s)	375
AsuC2I	CCSGG	1 cut(s)	232
AsuHPI	GGTGA	2 cut(s)	200, 727
AsuNHI	GCTAGC	1 cut(s)	551
AvaI	CYCGRG	1 cut(s)	489
BamHI	GGATCC	1 cut(s)	865
BbsI	GAAGAC	1 cut(s)	488
BccI	CCATC	2 cut(s)	189, 598
BcgI	CGANNNNNNTGC	4 cut(s)	73, 107, 1003, 1037
BciT130I	CCWGG	1 cut(s)	951
BcnI	CCSGG	1 cut(s)	232
BcoDI	GTCTC	5 cut(s)	273, 307, 789, 1009, 1059
BcuI	ACTAGT	1 cut(s)	745
BfaI	CTAG	2 cut(s)	552, 746
Bme1390I	CCNGG	2 cut(s)	232, 951
BmeRI	GACNNNNNGTC	1 cut(s)	1057
BmeT110I	CYCGRG	1 cut(s)	489
BmiI	GGNNCC	2 cut(s)	684, 867
BmrFI	CCNGG	2 cut(s)	232, 951
BmsI	GCATC	2 cut(s)	103, 562
BmtI	GCTAGC	1 cut(s)	555
BpiI	GAAGAC	1 cut(s)	488
BplI	GAGNNNNNCTC	2 cut(s)	483, 515
BpmI	CTGGAG	1 cut(s)	856
Bpu10I	CCTNAGC	1 cut(s)	815
BpuEI	CTTGAG	1 cut(s)	773
BpuMI	CCSGG	1 cut(s)	232
BsaHI	GRCGYC	1 cut(s)	219
BsaI	GGTCTC	2 cut(s)	789, 1009
BsaJI	CCNNGG	2 cut(s)	231, 950
BsaWI	WCCGGW	1 cut(s)	787
Bse3DI	GCAATG	3 cut(s)	562, 582, 702
BseAI	TCCGGA	1 cut(s)	787
BseBI	CCWGG	1 cut(s)	951
BseDI	CCNNGG	2 cut(s)	231, 950
BseGI	GGATG	1 cut(s)	609
BseMI	GCAATG	3 cut(s)	562, 582, 702
BseMII	CTCAG	3 cut(s)	492, 678, 1053
BsgI	GTGCAG	1 cut(s)	225
Bsh1236I	CGCG	1 cut(s)	1090
BsiHKCI	CYCGRG	1 cut(s)	489
BsiSI	CCGG	2 cut(s)	231, 788
BsmAI	GTCTC	5 cut(s)	273, 307, 789, 1009, 1059
BsmI	GAATGC	2 cut(s)	915, 990
Bso31I	GGTCTC	2 cut(s)	789, 1009
BsoBI	CYCGRG	1 cut(s)	489
Bsp13I	TCCGGA	1 cut(s)	787
Bsp143I	GATC	6 cut(s)	97, 444, 756, 865, 903, 1129
BspACI	CCGC	2 cut(s)	1029, 1088
BspCNI	CTCAG	3 cut(s)	491, 679, 1052
BspEI	TCCGGA	1 cut(s)	787
BspFNI	CGCG	1 cut(s)	1090
BspLI	GGNNCC	2 cut(s)	684, 867
BspOI	GCTAGC	1 cut(s)	555
BspPI	GGATC	3 cut(s)	860, 873, 1124
BspTNI	GGTCTC	2 cut(s)	789, 1009
BsrDI	GCAATG	3 cut(s)	562, 582, 702
BssECI	CCNNGG	2 cut(s)	231, 950
BssMI	GATC	6 cut(s)	97, 444, 756, 865, 903, 1129
BssNI	GRCGYC	1 cut(s)	219
Bst2UI	CCWGG	1 cut(s)	951
Bst4CI	ACNGT	1 cut(s)	674
Bst6I	CTCTTC	1 cut(s)	231
BstACI	GRCGYC	1 cut(s)	219
BstC8I	GCNNGC	1 cut(s)	553
BstDEI	CTNAG	6 cut(s)	448, 478, 687, 815, 893, 1039
BstF5I	GGATG	1 cut(s)	609
BstFNI	CGCG	1 cut(s)	1090
BstKTI	GATC	6 cut(s)	100, 447, 759, 868, 906, 1132
BstMAI	GTCTC	5 cut(s)	273, 307, 789, 1009, 1059
BstMBI	GATC	6 cut(s)	97, 444, 756, 865, 903, 1129
BstNI	CCWGG	1 cut(s)	951
BstSCI	CCNGG	2 cut(s)	230, 949
BstUI	CGCG	1 cut(s)	1090
BstV2I	GAAGAC	1 cut(s)	488
BstX2I	RGATCY	2 cut(s)	865, 1129
BstYI	RGATCY	2 cut(s)	865, 1129
BtsCI	GGATG	1 cut(s)	609
Cac8I	GCNNGC	1 cut(s)	553
CseI	GACGC	2 cut(s)	208, 1086
Csp6I	GTAC	1 cut(s)	743
CviAII	CATG	3 cut(s)	509, 643, 679
CviJI	RGCY	8 cut(s)	245, 343, 408, 551, 683, 801, 819, 971
CviKI_1	RGCY	8 cut(s)	245, 343, 408, 551, 683, 801, 819, 971
CviQI	GTAC	1 cut(s)	743
DdeI	CTNAG	6 cut(s)	448, 478, 687, 815, 893, 1039
DpnI	GATC	6 cut(s)	99, 446, 758, 867, 905, 1131
DpnII	GATC	6 cut(s)	97, 444, 756, 865, 903, 1129
DraI	TTTAAA	1 cut(s)	361
DriI	GACNNNNNGTC	1 cut(s)	1057
Eam1104I	CTCTTC	1 cut(s)	231
Eam1105I	GACNNNNNGTC	1 cut(s)	1057
EarI	CTCTTC	1 cut(s)	231
Eco31I	GGTCTC	2 cut(s)	789, 1009
Eco88I	CYCGRG	1 cut(s)	489
EcoRII	CCWGG	1 cut(s)	949
EcoT22I	ATGCAT	1 cut(s)	917
FaeI	CATG	3 cut(s)	512, 646, 682
FalI	AAGNNNNNCTT	2 cut(s)	360, 392
FatI	CATG	3 cut(s)	508, 642, 678
FauI	CCCGC	2 cut(s)	1036, 1095
FblI	GTMKAC	2 cut(s)	958, 1050
FokI	GGATG	1 cut(s)	616
FspBI	CTAG	2 cut(s)	552, 746
GsuI	CTGGAG	1 cut(s)	856
HapII	CCGG	2 cut(s)	231, 788
HgaI	GACGC	2 cut(s)	208, 1086
Hin1I	GRCGYC	1 cut(s)	219
Hin1II	CATG	3 cut(s)	512, 646, 682
HinfI	GANTC	6 cut(s)	227, 428, 515, 580, 946, 1052
HpaII	CCGG	2 cut(s)	231, 788
HphI	GGTGA	2 cut(s)	200, 727
Hpy166II	GTNNAC	5 cut(s)	295, 648, 743, 959, 1051
Hpy188I	TCNGA	4 cut(s)	102, 433, 585, 639
Hpy188III	TCNNGA	7 cut(s)	270, 686, 788, 907, 941, 1041, 1062
Hpy8I	GTNNAC	5 cut(s)	295, 648, 743, 959, 1051
Hpy99I	CGWCG	1 cut(s)	728
HpyAV	CCTTC	2 cut(s)	185, 836
HpyCH4III	ACNGT	1 cut(s)	674
HpyCH4IV	ACGT	2 cut(s)	463, 726
HpyCH4V	TGCA	9 cut(s)	116, 127, 206, 575, 662, 695, 915, 995, 1024
HpyF3I	CTNAG	6 cut(s)	448, 478, 687, 815, 893, 1039
HpySE526I	ACGT	2 cut(s)	463, 726
Hsp92I	GRCGYC	1 cut(s)	219
Hsp92II	CATG	3 cut(s)	512, 646, 682
Kpn2I	TCCGGA	1 cut(s)	787
Kzo9I	GATC	6 cut(s)	97, 444, 756, 865, 903, 1129
LmnI	GCTCC	1 cut(s)	688
LweI	GCATC	2 cut(s)	103, 562
MaeI	CTAG	2 cut(s)	552, 746
MaeII	ACGT	2 cut(s)	463, 726
MaeIII	GTNAC	2 cut(s)	674, 1111
MalI	GATC	6 cut(s)	99, 446, 758, 867, 905, 1131
MboI	GATC	6 cut(s)	97, 444, 756, 865, 903, 1129
MboII	GAAGA	9 cut(s)	33, 107, 115, 248, 380, 450, 488, 524, 803
MfeI	CAATTG	1 cut(s)	778
MflI	RGATCY	2 cut(s)	865, 1129
MluCI	AATT	7 cut(s)	119, 528, 611, 707, 778, 997, 1116
MlyI	GAGTC	1 cut(s)	1046
MnlI	CCTC	4 cut(s)	419, 485, 821, 881
Mph1103I	ATGCAT	1 cut(s)	917
MroI	TCCGGA	1 cut(s)	787
MroXI	GAANNNNTTC	1 cut(s)	375
MseI	TTAA	5 cut(s)	108, 360, 396, 618, 762
MslI	CAYNNNNRTG	1 cut(s)	186
MspI	CCGG	2 cut(s)	231, 788
MspR9I	CCNGG	2 cut(s)	232, 951
MunI	CAATTG	1 cut(s)	778
Mva1269I	GAATGC	2 cut(s)	915, 990
MvaI	CCWGG	1 cut(s)	951
MvnI	CGCG	1 cut(s)	1090
NciI	CCSGG	1 cut(s)	232
NdeII	GATC	6 cut(s)	97, 444, 756, 865, 903, 1129
NheI	GCTAGC	1 cut(s)	551
NlaIII	CATG	3 cut(s)	512, 646, 682
NlaIV	GGNNCC	2 cut(s)	684, 867
NsiI	ATGCAT	1 cut(s)	917
PaeR7I	CTCGAG	1 cut(s)	489
PctI	GAATGC	2 cut(s)	915, 990
PdmI	GAANNNNTTC	1 cut(s)	375
PfeI	GAWTC	5 cut(s)	227, 428, 515, 580, 946
PleI	GAGTC	1 cut(s)	1046
PpsI	GAGTC	1 cut(s)	1046
PsiI	TTATAA	1 cut(s)	213
Psp1406I	AACGTT	1 cut(s)	463
Psp6I	CCWGG	1 cut(s)	949
PspGI	CCWGG	1 cut(s)	949
PspN4I	GGNNCC	2 cut(s)	684, 867
PspXI	VCTCGAGB	1 cut(s)	489
PsuI	RGATCY	2 cut(s)	865, 1129
RsaI	GTAC	1 cut(s)	744
RsaNI	GTAC	1 cut(s)	743
RseI	CAYNNNNRTG	1 cut(s)	186
SaqAI	TTAA	5 cut(s)	108, 360, 396, 618, 762
Sau3AI	GATC	6 cut(s)	97, 444, 756, 865, 903, 1129
SchI	GAGTC	1 cut(s)	1046
ScrFI	CCNGG	2 cut(s)	232, 951
SfaNI	GCATC	2 cut(s)	103, 562
Sfr274I	CTCGAG	1 cut(s)	489
SlaI	CTCGAG	1 cut(s)	489
SmiMI	CAYNNNNRTG	1 cut(s)	186
SmlI	CTYRAG	2 cut(s)	489, 752
SmoI	CTYRAG	2 cut(s)	489, 752
SpeI	ACTAGT	1 cut(s)	745
Sse9I	AATT	7 cut(s)	119, 528, 611, 707, 778, 997, 1116
SsiI	CCGC	2 cut(s)	1029, 1088
SspMI	CTAG	2 cut(s)	552, 746
StyD4I	CCNGG	2 cut(s)	230, 949
TaaI	ACNGT	1 cut(s)	674
TaiI	ACGT	2 cut(s)	466, 729
TaqI	TCGA	3 cut(s)	93, 411, 490
TasI	AATT	7 cut(s)	119, 528, 611, 707, 778, 997, 1116
TatI	WGTACW	1 cut(s)	742
TfiI	GAWTC	5 cut(s)	227, 428, 515, 580, 946
Tru1I	TTAA	5 cut(s)	108, 360, 396, 618, 762
Tru9I	TTAA	5 cut(s)	108, 360, 396, 618, 762
TspDTI	ATGAA	7 cut(s)	17, 278, 409, 524, 525, 560, 593
TspGWI	ACGGA	1 cut(s)	1136
XapI	RAATTY	1 cut(s)	997
XhoI	CTCGAG	1 cut(s)	489
XmiI	GTMKAC	2 cut(s)	958, 1050
XmnI	GAANNNNTTC	1 cut(s)	375
XspI	CTAG	2 cut(s)	552, 746
Zsp2I	ATGCAT	1 cut(s)	917

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.