AT4G00970

Salt stress response/antifungal

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
418327 .. 421885
3559 bp
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UTR
Exon/CDS
Intron
AT4G00970.1

Sequence Viewer

Length: 1998 bp
ATGACTAGTTCTTGTTCTTTGTCTCGACCACAACACTTGTTCTTTTTCTTCTTCTTGTTCGTCCCATTTCTTAGCTTAGGACAACAAATCTCCGTCGACATAAACAGTGCTATATGGGAATTTCCCTCGAATCCATTATGTTTATCCCAACAAAGCAACTTTGCCAAATCATCCCAATTCTCCAAAAACCTAGACAGTCTTGTCTCTTCGATCCCTTCTCTCAAGTCCAACACTTACAACTTCTACAGTCTCTCTGTCGGAAGTATCTCGGATCAAGAACGAGTCGAGGCCATCGGGATCTGCAACAGAGTAGTCAATCGAGTAGATTGCCTTAACTGTATTGCTCAAGCCGCAGTGAATCTAACCACAATGTACTGCCCACAACATAGGGGAGCTTACGTGCGAGCCACGAAATGTATGTTTCGTTACTCAGACAAACCCATTTTCGGGAAACTCGAAACGAGTCCTGTTCTGGAAGCACCAAATCCGAGCAATGCTACGGGAGATAGAAACGAGTTTATTCGGTTGCAGAGCGAGTTACTTAACCGACTCAGATCCATGGCTGCATCAGGTGGCTCTAAGAGGAAGTATGCTCAAGGAACTGATCCTGGCTCTCCACCTTACACCACATTCTTTGGTGCCGTGCAGTGCACGCCGGATTTATCTGAGAAAGACTGCAACGACTGTCTCTCTTATGGTTTCAGTAACGCGACCAAAGGAAGAGTTGGTATCAGGTGGTTTTGTCCAAGCTGTAATTTTCAGATAGAGAGTGACTTGAGATTCTTCCTTCTCGACTCCGAGTATGAGCCTGATCCAAAACCAGGAAATGACAAAGTAAAAATCATTATTGCCACCGTTTGCTCTGTTATTGGTTTTGCTATAATCGCAGTCTTTCTTTACTTCTTTATGACAAGGAACAGAAGAACGGCAAAACAGAGACATGAAGGCAAAGATCTTGAAGAGCTTATGATTAAAGATGCACAATTATTGCAACTTGACTTTGATACCATAAGATTAGCAACTAATGACTTCTCTCGTGACAATCAACTTGGAGAAGGTGGCTTCGGTGCAGTTTATAAGGGTGTTCTTGATTATGGGGAAGAGATAGCTGTGAAAAGATTGTCAATGAAATCAGGACAAGGAGACAATGAGTTCATAAACGAAGTCTCATTGGTTGCAAAACTCCAACATCGTAACCTTGTTAGGCTCTTAGGTTTCTGCTTACAAGGAGAAGAACGAATTCTCATCTATGAGTTCTTCAAGAACACAAGCCTAGACCATTACATATTTGATTCTAATAGGAGAATGATCTTAGATTGGGAAACACGTTATAGGATTATCTCAGGTGTTGCTAGAGGTCTTCTCTATCTCCATGAAGATTCTCGTTTCAAGATTGTTCATAGAGATATGAAAGCCAGCAATGTTCTATTGGACGATGCAATGAATCCGAAAATCGCGGATTTTGGAATGGCAAAGTTGTTTGATACTGACCAAACAAGTCAGACCAGGTTTACAAGCAAAGTTGCAGGAACCTACGGTTACATGGCTCCAGAGTATGCAATGAGTGGCGAATTCTCGGTAAAAACCGATGTATTTAGCTTCGGTGTACTAGTCCTTGAGATTATTAAAGGTAAGAAAAACAATTGGTCTCCAGAAGAAGACAGCTCATTATTCCTCCTTAGCTATGTATGGAAGAGCTGGAGAGAAGGGGAAGTGTTAAACATTGTGGATCCAAGTTTGGTTGAAACAATAGGTGTCAGTGATGAAATCATGAAATGCATTCACATTGGTTTGTTGTGTGTTCAGGAGAATGCAGAGAGTAGACCAACAATGGCTTCTGTTGTTGTAATGCTCAATGCAAATTCTTTCACTTTACCGAGACCCTCGCAACCCGCATTTTACTCGGGAGATGGAGAATCATTGTCAAGAGACAAAAATCAGATAAATCATATTGCATCTTTGAATGATGTTACAATTACCGAGTTCGATGCTCGTTAA

Protein Analysis

665

Amino Acids

74.89

Weight (kDa)

5.97

Isoelectric Point (pI)

41.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 47 - 145 3.3e-15 Salt stress response/antifungal
Stress-antifung PF01657 170 - 256 9e-07 Salt stress response/antifungal
Pkinase PF00069 345 - 613 4.7e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 347 - 616 3.9e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020209)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00960 AT4G00960 AT4G00960 AT4G00960 AT4G00970 AT4G00970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1077
AasI GACNNNNNNGTC 1 cut(s) 200
AccB1I GGYRCC 1 cut(s) 638
AccI GTMKAC 2 cut(s) 96, 1822
AccII CGCG 2 cut(s) 710, 1457
AciI CCGC 3 cut(s) 351, 1457, 1893
AclWI GGATC 8 cut(s) 205, 279, 305, 549, 599, 806, 1724, 1737
AcsI RAATTY 4 cut(s) 119, 1239, 1571, 1861
AfaI GTAC 2 cut(s) 374, 1608
AfiI CCNNNNNNNGG 3 cut(s) 446, 447, 821
AflIII ACRYGT 1 cut(s) 1325
AgsI TTSAA 5 cut(s) 959, 1261, 1390, 1745, 1963
AhlI ACTAGT 2 cut(s) 5, 1609
AjnI CCWGG 3 cut(s) 607, 820, 1505
AjuI GAANNNNNNNTTGG 2 cut(s) 1819, 1851
AluBI AGCT 9 cut(s) 75, 395, 750, 964, 1109, 1599, 1665, 1683, 1698
AluI AGCT 9 cut(s) 75, 395, 750, 964, 1109, 1599, 1665, 1683, 1698
Alw21I GWGCWC 1 cut(s) 653
Alw44I GTGCAC 1 cut(s) 649
AlwI GGATC 8 cut(s) 205, 279, 305, 549, 599, 806, 1724, 1737
Ama87I CYCGRG 1 cut(s) 1903
AoxI GGCC 1 cut(s) 288
ApaLI GTGCAC 1 cut(s) 649
ApeKI GCWGC 1 cut(s) 563
ApoI RAATTY 4 cut(s) 119, 1239, 1571, 1861
Asp700I GAANNNNTTC 1 cut(s) 1239
AvaI CYCGRG 1 cut(s) 1903
BaeGI GKGCMC 1 cut(s) 653
BamHI GGATCC 1 cut(s) 1729
BanI GGYRCC 1 cut(s) 638
BauI CACGAG 1 cut(s) 1035
BbsI GAAGAC 2 cut(s) 1352, 1665
Bbv12I GWGCWC 1 cut(s) 653
BbvI GCAGC 1 cut(s) 550
BccI CCATC 2 cut(s) 299, 1904
BceAI ACGGC 2 cut(s) 626, 942
BcgI CGANNNNNNTGC 5 cut(s) 309, 343, 1884, 1918, 1970
BciT130I CCWGG 3 cut(s) 609, 822, 1507
BcuI ACTAGT 2 cut(s) 5, 1609
BfaI CTAG 5 cut(s) 6, 191, 1274, 1353, 1610
BfmI CTRYAG 1 cut(s) 244
BglII AGATCT 1 cut(s) 952
BisI GCNGC 2 cut(s) 351, 564
BlsI GCNGC 2 cut(s) 352, 565
Bme1390I CCNGG 3 cut(s) 609, 822, 1507
BmeT110I CYCGRG 1 cut(s) 1903
BmiI GGNNCC 4 cut(s) 640, 1531, 1548, 1731
BmrFI CCNGG 3 cut(s) 609, 822, 1507
BmsI GCATC 5 cut(s) 575, 967, 1426, 1964, 1978
BpiI GAAGAC 2 cut(s) 1352, 1665
BplI GAGNNNNNCTC 2 cut(s) 1347, 1379
BpmI CTGGAG 3 cut(s) 1533, 1635, 1720
Bpu10I CCTNAGC 2 cut(s) 76, 1679
BpuEI CTTGAG 5 cut(s) 206, 330, 579, 796, 1637
BsaAI YACGTR 1 cut(s) 400
BsaI GGTCTC 2 cut(s) 1653, 1873
BsaJI CCNNGG 1 cut(s) 558
BsaXI ACNNNNNCTCC 2 cut(s) 384, 414
Bsc4I CCNNNNNNNGG 3 cut(s) 446, 447, 821
Bse3DI GCAATG 4 cut(s) 499, 1426, 1446, 1566
BseBI CCWGG 3 cut(s) 609, 822, 1507
BseDI CCNNGG 1 cut(s) 558
BseGI GGATG 1 cut(s) 170
BseLI CCNNNNNNNGG 3 cut(s) 446, 447, 821
BseMI GCAATG 4 cut(s) 499, 1426, 1446, 1566
BseMII CTCAG 4 cut(s) 444, 565, 657, 1356
BseSI GKGCMC 1 cut(s) 653
BseXI GCAGC 1 cut(s) 550
BsgI GTGCAG 2 cut(s) 665, 1089
Bsh1236I CGCG 2 cut(s) 710, 1457
BshFI GGCC 1 cut(s) 290
BshNI GGYRCC 1 cut(s) 638
BsiHKAI GWGCWC 1 cut(s) 653
BsiHKCI CYCGRG 1 cut(s) 1903
BsiSI CCGG 1 cut(s) 656
BslFI GGGAC 1 cut(s) 47
BslI CCNNNNNNNGG 3 cut(s) 446, 447, 821
BsmFI GGGAC 1 cut(s) 47
BsmI GAATGC 2 cut(s) 1779, 1816
BsnI GGCC 1 cut(s) 290
Bso31I GGTCTC 2 cut(s) 1653, 1873
BsoBI CYCGRG 1 cut(s) 1903
Bsp1286I GDGCHC 1 cut(s) 653
Bsp143I GATC 9 cut(s) 210, 271, 297, 554, 604, 811, 952, 1308, 1729
Bsp19I CCATGG 1 cut(s) 558
BspACI CCGC 3 cut(s) 351, 1457, 1893
BspANI GGCC 1 cut(s) 290
BspCNI CTCAG 4 cut(s) 443, 564, 658, 1355
BspFNI CGCG 2 cut(s) 710, 1457
BspHI TCATGA 1 cut(s) 1770
BspLI GGNNCC 4 cut(s) 640, 1531, 1548, 1731
BspPI GGATC 8 cut(s) 205, 279, 305, 549, 599, 806, 1724, 1737
BspQI GCTCTTC 2 cut(s) 954, 1688
BspT107I GGYRCC 1 cut(s) 638
BspTNI GGTCTC 2 cut(s) 1653, 1873
BsrDI GCAATG 4 cut(s) 499, 1426, 1446, 1566
BssECI CCNNGG 1 cut(s) 558
BssMI GATC 9 cut(s) 210, 271, 297, 554, 604, 811, 952, 1308, 1729
BssSI CACGAG 1 cut(s) 1035
BssT1I CCWWGG 1 cut(s) 558
Bst2BI CACGAG 1 cut(s) 1035
Bst2UI CCWGG 3 cut(s) 609, 822, 1507
Bst4CI ACNGT 7 cut(s) 107, 197, 248, 338, 686, 856, 1538
Bst6I CTCTTC 5 cut(s) 211, 715, 954, 1095, 1688
BstBAI YACGTR 1 cut(s) 400
BstC8I GCNNGC 3 cut(s) 405, 653, 1417
BstDSI CCRYGG 1 cut(s) 558
BstF5I GGATG 1 cut(s) 170
BstFNI CGCG 2 cut(s) 710, 1457
BstKTI GATC 9 cut(s) 213, 274, 300, 557, 607, 814, 955, 1311, 1732
BstMBI GATC 9 cut(s) 210, 271, 297, 554, 604, 811, 952, 1308, 1729
BstMWI GCNNNNNNNGC 3 cut(s) 350, 652, 884
BstNI CCWGG 3 cut(s) 609, 822, 1507
BstSCI CCNGG 3 cut(s) 607, 820, 1505
BstSFI CTRYAG 1 cut(s) 244
BstSLI GKGCMC 1 cut(s) 653
BstUI CGCG 2 cut(s) 710, 1457
BstV1I GCAGC 1 cut(s) 550
BstV2I GAAGAC 2 cut(s) 1352, 1665
BstX2I RGATCY 4 cut(s) 297, 554, 952, 1729
BstYI RGATCY 4 cut(s) 297, 554, 952, 1729
BsuRI GGCC 1 cut(s) 290
BtgI CCRYGG 1 cut(s) 558
BtsCI GGATG 1 cut(s) 170
BtsI GCAGTG 2 cut(s) 360, 653
BtsIMutI CAGTG 4 cut(s) 112, 360, 653, 1765
Cac8I GCNNGC 3 cut(s) 405, 653, 1417
CciI TCATGA 1 cut(s) 1770
CsiI ACCWGGT 1 cut(s) 1505
Csp6I GTAC 2 cut(s) 373, 1607
CspCI CAANNNNNGTGG 4 cut(s) 18, 53, 616, 651
CviAII CATG 5 cut(s) 559, 941, 1373, 1543, 1771
CviQI GTAC 2 cut(s) 373, 1607
DpnI GATC 9 cut(s) 212, 273, 299, 556, 606, 813, 954, 1310, 1731
DpnII GATC 9 cut(s) 210, 271, 297, 554, 604, 811, 952, 1308, 1729
DrdI GACNNNNNNGTC 1 cut(s) 200
DseDI GACNNNNNNGTC 1 cut(s) 200
Eam1104I CTCTTC 5 cut(s) 211, 715, 954, 1095, 1688
EarI CTCTTC 5 cut(s) 211, 715, 954, 1095, 1688
Eco130I CCWWGG 1 cut(s) 558
Eco31I GGTCTC 2 cut(s) 1653, 1873
Eco88I CYCGRG 1 cut(s) 1903
EcoRI GAATTC 2 cut(s) 1239, 1571
EcoRII CCWGG 3 cut(s) 607, 820, 1505
EcoT14I CCWWGG 1 cut(s) 558
EcoT22I ATGCAT 1 cut(s) 1781
ErhI CCWWGG 1 cut(s) 558
FaeI CATG 5 cut(s) 562, 944, 1376, 1546, 1774
FaqI GGGAC 1 cut(s) 47
FatI CATG 5 cut(s) 558, 940, 1372, 1542, 1770
FauI CCCGC 1 cut(s) 1900
FblI GTMKAC 2 cut(s) 96, 1822
Fnu4HI GCNGC 2 cut(s) 351, 564
FokI GGATG 1 cut(s) 157
Fsp4HI GCNGC 2 cut(s) 351, 564
FspBI CTAG 5 cut(s) 6, 191, 1274, 1353, 1610
GluI GCNGC 2 cut(s) 351, 564
GsuI CTGGAG 3 cut(s) 1533, 1635, 1720
HaeIII GGCC 1 cut(s) 290
HapII CCGG 1 cut(s) 656
Hin1II CATG 5 cut(s) 562, 944, 1376, 1546, 1774
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HpaII CCGG 1 cut(s) 656
Hpy166II GTNNAC 5 cut(s) 97, 651, 1512, 1607, 1823
Hpy8I GTNNAC 5 cut(s) 97, 651, 1512, 1607, 1823
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 5 cut(s) 225, 797, 938, 1049, 1700
HpyCH4III ACNGT 7 cut(s) 107, 197, 248, 338, 686, 856, 1538
HpyCH4IV ACGT 2 cut(s) 399, 1327
HpyF10VI GCNNNNNNNGC 3 cut(s) 350, 652, 884
HpySE526I ACGT 2 cut(s) 399, 1327
Hsp92II CATG 5 cut(s) 562, 944, 1376, 1546, 1774
Kzo9I GATC 9 cut(s) 210, 271, 297, 554, 604, 811, 952, 1308, 1729
LguI GCTCTTC 2 cut(s) 954, 1688
LmnI GCTCC 2 cut(s) 392, 1552
Lsp1109I GCAGC 1 cut(s) 550
LweI GCATC 5 cut(s) 575, 967, 1426, 1964, 1978
MabI ACCWGGT 1 cut(s) 1505
MaeI CTAG 5 cut(s) 6, 191, 1274, 1353, 1610
MaeII ACGT 2 cut(s) 399, 1327
MaeIII GTNAC 8 cut(s) 425, 537, 704, 770, 1037, 1193, 1538, 1969
MalI GATC 9 cut(s) 212, 273, 299, 556, 606, 813, 954, 1310, 1731
MboI GATC 9 cut(s) 210, 271, 297, 554, 604, 811, 952, 1308, 1729
MfeI CAATTG 1 cut(s) 1642
MflI RGATCY 4 cut(s) 297, 554, 952, 1729
MhlI GDGCHC 1 cut(s) 653
MluCI AATT 9 cut(s) 119, 176, 754, 983, 1239, 1571, 1642, 1861, 1974
MlyI GAGTC 4 cut(s) 291, 472, 543, 788
MmeI TCCRAC 3 cut(s) 238, 252, 1210
MnlI CCTC 6 cut(s) 136, 280, 576, 1349, 1685, 1894
Mph1103I ATGCAT 1 cut(s) 1781
MroXI GAANNNNTTC 1 cut(s) 1239
MseI TTAA 6 cut(s) 333, 543, 972, 1626, 1718, 1996
MspI CCGG 1 cut(s) 656
MspR9I CCNGG 3 cut(s) 609, 822, 1507
MunI CAATTG 1 cut(s) 1642
Mva1269I GAATGC 2 cut(s) 1779, 1816
MvaI CCWGG 3 cut(s) 609, 822, 1507
MvnI CGCG 2 cut(s) 710, 1457
MwoI GCNNNNNNNGC 3 cut(s) 350, 652, 884
NcoI CCATGG 1 cut(s) 558
NdeII GATC 9 cut(s) 210, 271, 297, 554, 604, 811, 952, 1308, 1729
NlaIII CATG 5 cut(s) 562, 944, 1376, 1546, 1774
NlaIV GGNNCC 4 cut(s) 640, 1531, 1548, 1731
NmuCI GTSAC 2 cut(s) 770, 1037
NsiI ATGCAT 1 cut(s) 1781
PagI TCATGA 1 cut(s) 1770
PciSI GCTCTTC 2 cut(s) 954, 1688
PcsI WCGNNNNNNNCGW 1 cut(s) 453
PctI GAATGC 2 cut(s) 1779, 1816
PdmI GAANNNNTTC 1 cut(s) 1239
PfeI GAWTC 7 cut(s) 130, 358, 780, 1292, 1379, 1444, 1916
PkrI GCNGC 2 cut(s) 352, 565
PleI GAGTC 4 cut(s) 290, 471, 543, 788
PpsI GAGTC 4 cut(s) 290, 471, 543, 788
Ppu21I YACGTR 1 cut(s) 400
PsiI TTATAA 1 cut(s) 1077
Psp6I CCWGG 3 cut(s) 607, 820, 1505
PspGI CCWGG 3 cut(s) 607, 820, 1505
PspN4I GGNNCC 4 cut(s) 640, 1531, 1548, 1731
PsuI RGATCY 4 cut(s) 297, 554, 952, 1729
RsaI GTAC 2 cut(s) 374, 1608
RsaNI GTAC 2 cut(s) 373, 1607
SalI GTCGAC 1 cut(s) 95
SapI GCTCTTC 2 cut(s) 954, 1688
SaqAI TTAA 6 cut(s) 333, 543, 972, 1626, 1718, 1996
SatI GCNGC 2 cut(s) 351, 564
Sau3AI GATC 9 cut(s) 210, 271, 297, 554, 604, 811, 952, 1308, 1729
SchI GAGTC 4 cut(s) 291, 472, 543, 788
ScrFI CCNGG 3 cut(s) 609, 822, 1507
SduI GDGCHC 1 cut(s) 653
SexAI ACCWGGT 1 cut(s) 1505
SfaNI GCATC 5 cut(s) 575, 967, 1426, 1964, 1978
SfcI CTRYAG 1 cut(s) 244
SmlI CTYRAG 5 cut(s) 221, 345, 594, 775, 1616
SmoI CTYRAG 5 cut(s) 221, 345, 594, 775, 1616
SpeI ACTAGT 2 cut(s) 5, 1609
Sse9I AATT 9 cut(s) 119, 176, 754, 983, 1239, 1571, 1642, 1861, 1974
SsiI CCGC 3 cut(s) 351, 1457, 1893
SspMI CTAG 5 cut(s) 6, 191, 1274, 1353, 1610
StyD4I CCNGG 3 cut(s) 607, 820, 1505
StyI CCWWGG 1 cut(s) 558
TaaI ACNGT 7 cut(s) 107, 197, 248, 338, 686, 856, 1538
TaiI ACGT 2 cut(s) 402, 1330
TaqI TCGA 9 cut(s) 25, 96, 128, 209, 285, 319, 456, 792, 1986
TasI AATT 9 cut(s) 119, 176, 754, 983, 1239, 1571, 1642, 1861, 1974
TatI WGTACW 2 cut(s) 372, 1606
TauI GCSGC 1 cut(s) 353
TfiI GAWTC 7 cut(s) 130, 358, 780, 1292, 1379, 1444, 1916
Tru1I TTAA 6 cut(s) 333, 543, 972, 1626, 1718, 1996
Tru9I TTAA 6 cut(s) 333, 543, 972, 1626, 1718, 1996
TscAI CASTG 4 cut(s) 112, 360, 653, 1765
TseFI GTSAC 2 cut(s) 770, 1037
TseI GCWGC 1 cut(s) 563
Tsp45I GTSAC 2 cut(s) 770, 1037
TspDTI ATGAA 9 cut(s) 957, 1142, 1144, 1388, 1389, 1424, 1457, 1779, 1787
TspGWI ACGGA 1 cut(s) 82
TspRI CASTG 4 cut(s) 112, 360, 653, 1765
VneI GTGCAC 1 cut(s) 649
XapI RAATTY 4 cut(s) 119, 1239, 1571, 1861
XmiI GTMKAC 2 cut(s) 96, 1822
XmnI GAANNNNTTC 1 cut(s) 1239
XspI CTAG 5 cut(s) 6, 191, 1274, 1353, 1610
Zsp2I ATGCAT 1 cut(s) 1781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.