Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0023767

Physical Location & Seq

Genomic Coordinates Forward (+)

7375855 .. 7380372

Gene Structure 4518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G12440.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGTCTGAGAACGAAGTCAAGGATCCTCGTATCGATGGTATCAAAACTAAGATCCGTGTCGTTCCAGATTTTCCCAAGAAAGGTATAATGTTCCAAGACATAACAACACTGCTGCTAGATCCTAAAGCCTTTAAAGACACCATTGATCTGTTTGTTGAGAGGTATCGAGACATGAACATCTCGGTGGTTGCAGGTATAGAGGCTCGCGGTTTCATATTCGGTTCACCCATCGCATTAGCCATCGGAGCAAAATTTGTTCCTCTTCGTAAACCAAAGAAATTGCCGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003999 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006144 GO:0006168 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009112 GO:0009113 GO:0009987 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0042440 GO:0043094 GO:0043096 GO:0043101 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046083 GO:0046084 GO:0046112 GO:0046148 GO:0046483 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Pribosyltran

Protein Analysis

96

Amino Acids

10.74

Weight (kDa)

9.69

Isoelectric Point (pI)

25.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12440 AT4G12440 AT4G22570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	182
AccII	CGCG	1 cut(s)	207
AciI	CCGC	1 cut(s)	207
AclWI	GGATC	4 cut(s)	17, 30, 46, 113
AcsI	RAATTY	1 cut(s)	251
AfiI	CCNNNNNNNGG	1 cut(s)	80
Alw26I	GTCTC	1 cut(s)	162
AlwI	GGATC	4 cut(s)	17, 30, 46, 113
ApeKI	GCWGC	1 cut(s)	112
ApoI	RAATTY	1 cut(s)	251
AsuC2I	CCSGG	1 cut(s)	285
AsuHPI	GGTGA	1 cut(s)	216
BamHI	GGATCC	1 cut(s)	22
BbvI	GCAGC	1 cut(s)	99
BccI	CCATC	3 cut(s)	29, 236, 248
BcnI	CCSGG	1 cut(s)	285
BcoDI	GTCTC	1 cut(s)	162
BfaI	CTAG	1 cut(s)	116
BfuAI	ACCTGC	1 cut(s)	182
BisI	GCNGC	1 cut(s)	113
BlsI	GCNGC	1 cut(s)	114
Bme1390I	CCNGG	1 cut(s)	285
BmiI	GGNNCC	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	285
BpuMI	CCSGG	1 cut(s)	285
Bsa29I	ATCGAT	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
BseCI	ATCGAT	1 cut(s)	33
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseXI	GCAGC	1 cut(s)	99
Bsh1236I	CGCG	1 cut(s)	207
BshVI	ATCGAT	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	284
BslI	CCNNNNNNNGG	1 cut(s)	80
BsmAI	GTCTC	1 cut(s)	162
Bsp143I	GATC	4 cut(s)	22, 51, 118, 145
BspACI	CCGC	1 cut(s)	207
BspDI	ATCGAT	1 cut(s)	33
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	1 cut(s)	24
BspMI	ACCTGC	1 cut(s)	182
BspPI	GGATC	4 cut(s)	17, 30, 46, 113
BssMI	GATC	4 cut(s)	22, 51, 118, 145
Bst6I	CTCTTC	1 cut(s)	267
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	2 cut(s)	6, 48
BstFNI	CGCG	1 cut(s)	207
BstKTI	GATC	4 cut(s)	25, 54, 121, 148
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	4 cut(s)	22, 51, 118, 145
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	283
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	1 cut(s)	99
BstX2I	RGATCY	3 cut(s)	22, 51, 118
BstYI	RGATCY	3 cut(s)	22, 51, 118
Bsu15I	ATCGAT	1 cut(s)	33
BsuTUI	ATCGAT	1 cut(s)	33
BtgZI	GCGATG	1 cut(s)	214
BtsI	GCAGTG	1 cut(s)	107
BtsIMutI	CAGTG	1 cut(s)	107
BveI	ACCTGC	1 cut(s)	182
Cac8I	GCNNGC	1 cut(s)	205
ClaI	ATCGAT	1 cut(s)	33
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	3 cut(s)	128, 203, 239
CviKI_1	RGCY	3 cut(s)	128, 203, 239
DdeI	CTNAG	2 cut(s)	6, 48
DpnI	GATC	4 cut(s)	24, 53, 120, 147
DpnII	GATC	4 cut(s)	22, 51, 118, 145
DraI	TTTAAA	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
FaeI	CATG	1 cut(s)	175
FaiI	YATR	5 cut(s)	86, 101, 173, 197, 215
FatI	CATG	1 cut(s)	171
Fnu4HI	GCNGC	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	113
FspBI	CTAG	1 cut(s)	116
GluI	GCNGC	1 cut(s)	113
HapII	CCGG	1 cut(s)	284
Hin1II	CATG	1 cut(s)	175
HpaII	CCGG	1 cut(s)	284
HphI	GGTGA	1 cut(s)	216
Hpy166II	GTNNAC	2 cut(s)	224, 269
Hpy188I	TCNGA	2 cut(s)	7, 245
Hpy188III	TCNNGA	2 cut(s)	65, 167
Hpy8I	GTNNAC	2 cut(s)	224, 269
HpyCH4V	TGCA	1 cut(s)	191
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	2 cut(s)	6, 48
Hsp92II	CATG	1 cut(s)	175
Kzo9I	GATC	4 cut(s)	22, 51, 118, 145
LmnI	GCTCC	1 cut(s)	245
LpnPI	CCDG	2 cut(s)	78, 177
Lsp1109I	GCAGC	1 cut(s)	99
MaeI	CTAG	1 cut(s)	116
MalI	GATC	4 cut(s)	24, 53, 120, 147
MboI	GATC	4 cut(s)	22, 51, 118, 145
MboII	GAAGA	1 cut(s)	254
MflI	RGATCY	3 cut(s)	22, 51, 118
MluCI	AATT	2 cut(s)	251, 278
MnlI	CCTC	4 cut(s)	36, 153, 193, 270
MseI	TTAA	2 cut(s)	132, 289
MslI	CAYNNNNRTG	1 cut(s)	182
MspI	CCGG	1 cut(s)	284
MspR9I	CCNGG	1 cut(s)	285
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	245
NciI	CCSGG	1 cut(s)	285
NdeII	GATC	4 cut(s)	22, 51, 118, 145
NlaIII	CATG	1 cut(s)	175
NlaIV	GGNNCC	1 cut(s)	24
PkrI	GCNGC	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	24
PsuI	RGATCY	3 cut(s)	22, 51, 118
RseI	CAYNNNNRTG	1 cut(s)	182
SaqAI	TTAA	2 cut(s)	132, 289
SatI	GCNGC	1 cut(s)	113
Sau3AI	GATC	4 cut(s)	22, 51, 118, 145
ScrFI	CCNGG	1 cut(s)	285
SetI	ASST	3 cut(s)	85, 164, 196
SmiMI	CAYNNNNRTG	1 cut(s)	182
Sse9I	AATT	2 cut(s)	251, 278
SsiI	CCGC	1 cut(s)	207
SspMI	CTAG	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	283
TaqI	TCGA	2 cut(s)	33, 166
TasI	AATT	2 cut(s)	251, 278
Tru1I	TTAA	2 cut(s)	132, 289
Tru9I	TTAA	2 cut(s)	132, 289
TscAI	CASTG	1 cut(s)	114
TseI	GCWGC	1 cut(s)	112
TspDTI	ATGAA	2 cut(s)	188, 202
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	1 cut(s)	114
XapI	RAATTY	1 cut(s)	251
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.