Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010754

Physical Location & Seq

Genomic Coordinates Reverse (-)

11882066 .. 11885533

Gene Structure 3468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G22570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTCGGGAAACAAAGAAGAAGAGGATCCTCGTATCCATGGAATCAAAACTAAGATCCGTGTCGTTCCAGATTTTCCCAAGAAAGGAATAATGTTTCAAGACATAACAACAGTGTTGTTGGATCCGAAAGCCTTCAAAGACACAATTGATCTGTTTGTGGAGAGGTACAGAGACAAGAACATCTCAGTGGTTGCAGGAATAGAGGCTCGTGGTTTCCTATTCGGTCCACCGATCGCGCTAGCCATTGGAGCAAAATTTGTTCCTCTGCGCAAACCCAAGAAACTACCTGGTGAAACAATATTTGAGGAATACGAGTTGGAATATGGAAATGACCGCCTAGAGATGCACATAGGAGCCGTCGAGGCTGGCGATCGAGCTTTGGTCGTTGATGATCTTATCGCGACTGGTGGTACTCTCTGCGCTGCCATTAACTTGCTCGAGAGGGTTGGAGCAGAAGTTGTGGAATGTGCATGTGTGATCGAGTTACCCGAATTAAAGGGAAGGCAGAGACTTAAGGGGAAGCCACTATGTATGCTTGTGGAGTACCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003999 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006144 GO:0006168 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009112 GO:0009113 GO:0009987 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0042440 GO:0043094 GO:0043096 GO:0043101 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046083 GO:0046084 GO:0046112 GO:0046148 GO:0046483 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Pribosyltran

Protein Analysis

183

Amino Acids

20.35

Weight (kDa)

5.83

Isoelectric Point (pI)

31.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pribosyltran	PF00156	40 - 166	6.4e-19	Phosphoribosyl transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12440 AT4G12440 AT4G22570
fragaria_vesca	FvH4_5g00190
malus_domestica	MD04G1085600.v1.1 MD06G1062600.v1.1
prunus_persica	Prupe.5G074000_v2.0.a1 Prupe.5G074000_v2.0.a1
pyrus_communis	pycom04g07680
rosa_chinensis	RchiOBHm_Chr7g0202681
rosa_laevigata	RLG00000003580
rosa_multiflora	Rmu_sc0002365.1_g000006
rosa_roxburghii	Rroxscaffold_3G00254400
rosa_rugosa	Rorug07G0072000 Rorug07G0072100
rosa_samantha	Rh7AG199800 Rh7BG200500 Rh7CG211300 Rh7DG206700
rosa_wichuraiana	Rw7G017490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	269
AccII	CGCG	2 cut(s)	236, 401
AciI	CCGC	1 cut(s)	334
AclWI	GGATC	5 cut(s)	20, 33, 49, 116, 129
AcsI	RAATTY	1 cut(s)	254
AfaI	GTAC	3 cut(s)	167, 412, 545
AfiI	CCNNNNNNNGG	1 cut(s)	83
AflII	CTTAAG	1 cut(s)	512
AgsI	TTSAA	2 cut(s)	98, 136
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	1 cut(s)	377
AluI	AGCT	1 cut(s)	377
Alw26I	GTCTC	2 cut(s)	165, 502
AlwI	GGATC	5 cut(s)	20, 33, 49, 116, 129
Ama87I	CYCGRG	1 cut(s)	437
ApeKI	GCWGC	1 cut(s)	422
ApoI	RAATTY	1 cut(s)	254
Asp700I	GAANNNNTTC	1 cut(s)	131
AspLEI	GCGC	3 cut(s)	238, 270, 422
AspS9I	GGNCC	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	302
AsuNHI	GCTAGC	1 cut(s)	238
AvaI	CYCGRG	1 cut(s)	437
AvaII	GGWCC	1 cut(s)	224
BamHI	GGATCC	2 cut(s)	25, 121
BauI	CACGAG	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	409
BceAI	ACGGC	1 cut(s)	341
BciT130I	CCWGG	1 cut(s)	288
BciVI	GTATCC	1 cut(s)	44
BcoDI	GTCTC	2 cut(s)	165, 502
BfaI	CTAG	2 cut(s)	239, 338
BfrI	CTTAAG	1 cut(s)	512
BfuI	GTATCC	1 cut(s)	44
BglI	GCCNNNNNGGC	1 cut(s)	362
BisI	GCNGC	1 cut(s)	423
BlsI	GCNGC	1 cut(s)	424
Bme1390I	CCNGG	1 cut(s)	288
Bme18I	GGWCC	1 cut(s)	224
BmeT110I	CYCGRG	1 cut(s)	437
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	3 cut(s)	27, 123, 355
BmrFI	CCNGG	1 cut(s)	288
BmsI	GCATC	1 cut(s)	333
BmtI	GCTAGC	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	37
BsaXI	ACNNNNNCTCC	2 cut(s)	441, 471
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	409
BseBI	CCWGG	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	37
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	1 cut(s)	409
BseXI	GCAGC	1 cut(s)	409
Bsh1236I	CGCG	2 cut(s)	236, 401
Bsh1285I	CGRYCG	2 cut(s)	234, 373
BsiEI	CGRYCG	2 cut(s)	234, 373
BsiHKCI	CYCGRG	1 cut(s)	437
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	2 cut(s)	165, 502
BsoBI	CYCGRG	1 cut(s)	437
Bsp143I	GATC	8 cut(s)	25, 54, 121, 148, 231, 370, 391, 477
Bsp19I	CCATGG	1 cut(s)	37
Bsp68I	TCGCGA	1 cut(s)	401
BspACI	CCGC	1 cut(s)	334
BspCNI	CTCAG	1 cut(s)	197
BspFNI	CGCG	2 cut(s)	236, 401
BspLI	GGNNCC	3 cut(s)	27, 123, 355
BspOI	GCTAGC	1 cut(s)	242
BspPI	GGATC	5 cut(s)	20, 33, 49, 116, 129
BspTI	CTTAAG	1 cut(s)	512
BsrI	ACTGG	1 cut(s)	409
BssECI	CCNNGG	1 cut(s)	37
BssMI	GATC	8 cut(s)	25, 54, 121, 148, 231, 370, 391, 477
BssSI	CACGAG	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	37
Bst2BI	CACGAG	1 cut(s)	207
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	1 cut(s)	15
BstAFI	CTTAAG	1 cut(s)	512
BstC8I	GCNNGC	2 cut(s)	240, 367
BstDEI	CTNAG	2 cut(s)	51, 184
BstDSI	CCRYGG	1 cut(s)	37
BstFNI	CGCG	2 cut(s)	236, 401
BstHHI	GCGC	3 cut(s)	238, 270, 422
BstKTI	GATC	8 cut(s)	28, 57, 124, 151, 234, 373, 394, 480
BstMAI	GTCTC	2 cut(s)	165, 502
BstMBI	GATC	8 cut(s)	25, 54, 121, 148, 231, 370, 391, 477
BstMCI	CGRYCG	2 cut(s)	234, 373
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 362
BstNI	CCWGG	1 cut(s)	288
BstNSI	RCATGY	1 cut(s)	474
BstSCI	CCNGG	1 cut(s)	286
BstUI	CGCG	2 cut(s)	236, 401
BstV1I	GCAGC	1 cut(s)	409
BstX2I	RGATCY	3 cut(s)	25, 54, 121
BstYI	RGATCY	3 cut(s)	25, 54, 121
BsuI	GTATCC	1 cut(s)	44
BtgI	CCRYGG	1 cut(s)	37
BtsIMutI	CAGTG	2 cut(s)	117, 192
BtuMI	TCGCGA	1 cut(s)	401
Cac8I	GCNNGC	2 cut(s)	240, 367
CfoI	GCGC	3 cut(s)	238, 270, 422
Cfr13I	GGNCC	1 cut(s)	224
CsiI	ACCWGGT	1 cut(s)	286
Csp6I	GTAC	3 cut(s)	166, 411, 544
CviAII	CATG	2 cut(s)	38, 471
CviJI	RGCY	7 cut(s)	131, 206, 242, 356, 365, 377, 523
CviKI_1	RGCY	7 cut(s)	131, 206, 242, 356, 365, 377, 523
CviQI	GTAC	3 cut(s)	166, 411, 544
DdeI	CTNAG	2 cut(s)	51, 184
DpnI	GATC	8 cut(s)	27, 56, 123, 150, 233, 372, 393, 479
DpnII	GATC	8 cut(s)	25, 54, 121, 148, 231, 370, 391, 477
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	224
Eco88I	CYCGRG	1 cut(s)	437
EcoRII	CCWGG	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	37
ErhI	CCWWGG	1 cut(s)	37
FaeI	CATG	2 cut(s)	41, 474
FaiI	YATR	7 cut(s)	39, 104, 324, 350, 472, 529, 533
FatI	CATG	2 cut(s)	37, 470
Fnu4HI	GCNGC	1 cut(s)	423
Fsp4HI	GCNGC	1 cut(s)	423
FspBI	CTAG	2 cut(s)	239, 338
FspI	TGCGCA	1 cut(s)	269
GlaI	GCGC	3 cut(s)	237, 269, 421
GluI	GCNGC	1 cut(s)	423
HhaI	GCGC	3 cut(s)	238, 270, 422
Hin1II	CATG	2 cut(s)	41, 474
Hin6I	GCGC	3 cut(s)	236, 268, 420
HinP1I	GCGC	3 cut(s)	236, 268, 420
HinfI	GANTC	1 cut(s)	42
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	1 cut(s)	126
Hpy188III	TCNNGA	5 cut(s)	6, 68, 98, 400, 439
Hpy8I	GTNNAC	1 cut(s)	227
Hpy99I	CGWCG	1 cut(s)	362
HpyAV	CCTTC	2 cut(s)	142, 495
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	3 cut(s)	194, 346, 470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 362
HpyF3I	CTNAG	2 cut(s)	51, 184
Hsp92II	CATG	2 cut(s)	41, 474
HspAI	GCGC	3 cut(s)	236, 268, 420
Kzo9I	GATC	8 cut(s)	25, 54, 121, 148, 231, 370, 391, 477
LmnI	GCTCC	3 cut(s)	248, 353, 449
LpnPI	CCDG	6 cut(s)	81, 180, 273, 300, 351, 390
Lsp1109I	GCAGC	1 cut(s)	409
LweI	GCATC	1 cut(s)	333
MabI	ACCWGGT	1 cut(s)	286
MaeI	CTAG	2 cut(s)	239, 338
MaeIII	GTNAC	1 cut(s)	483
MalI	GATC	8 cut(s)	27, 56, 123, 150, 233, 372, 393, 479
MboI	GATC	8 cut(s)	25, 54, 121, 148, 231, 370, 391, 477
MboII	GAAGA	2 cut(s)	29, 32
MfeI	CAATTG	1 cut(s)	144
MflI	RGATCY	3 cut(s)	25, 54, 121
MluCI	AATT	3 cut(s)	144, 254, 491
MmeI	TCCRAC	3 cut(s)	99, 297, 427
MnlI	CCTC	8 cut(s)	16, 39, 156, 196, 273, 298, 355, 435
MroXI	GAANNNNTTC	1 cut(s)	131
MseI	TTAA	3 cut(s)	429, 494, 513
MslI	CAYNNNNRTG	1 cut(s)	185
MspCI	CTTAAG	1 cut(s)	512
MspR9I	CCNGG	1 cut(s)	288
MunI	CAATTG	1 cut(s)	144
MvaI	CCWGG	1 cut(s)	288
MvnI	CGCG	2 cut(s)	236, 401
MwoI	GCNNNNNNNGC	2 cut(s)	248, 362
NcoI	CCATGG	1 cut(s)	37
NdeII	GATC	8 cut(s)	25, 54, 121, 148, 231, 370, 391, 477
NheI	GCTAGC	1 cut(s)	238
NlaIII	CATG	2 cut(s)	41, 474
NlaIV	GGNNCC	3 cut(s)	27, 123, 355
NruI	TCGCGA	1 cut(s)	401
NsbI	TGCGCA	1 cut(s)	269
NspI	RCATGY	1 cut(s)	474
PaeR7I	CTCGAG	1 cut(s)	437
PcsI	WCGNNNNNNNCGW	2 cut(s)	366, 486
PdmI	GAANNNNTTC	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	42
PkrI	GCNGC	1 cut(s)	424
Ple19I	CGATCG	2 cut(s)	234, 373
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	3 cut(s)	27, 123, 355
PspPI	GGNCC	1 cut(s)	224
PsuI	RGATCY	3 cut(s)	25, 54, 121
PvuI	CGATCG	2 cut(s)	234, 373
RruI	TCGCGA	1 cut(s)	401
RsaI	GTAC	3 cut(s)	167, 412, 545
RsaNI	GTAC	3 cut(s)	166, 411, 544
RseI	CAYNNNNRTG	1 cut(s)	185
SaqAI	TTAA	3 cut(s)	429, 494, 513
SatI	GCNGC	1 cut(s)	423
Sau3AI	GATC	8 cut(s)	25, 54, 121, 148, 231, 370, 391, 477
Sau96I	GGNCC	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	288
SetI	ASST	3 cut(s)	167, 289, 379
SexAI	ACCWGGT	1 cut(s)	286
SfaNI	GCATC	1 cut(s)	333
Sfr274I	CTCGAG	1 cut(s)	437
SinI	GGWCC	1 cut(s)	224
SlaI	CTCGAG	1 cut(s)	437
SmiMI	CAYNNNNRTG	1 cut(s)	185
SmlI	CTYRAG	2 cut(s)	437, 512
SmoI	CTYRAG	2 cut(s)	437, 512
Sse9I	AATT	3 cut(s)	144, 254, 491
SsiI	CCGC	1 cut(s)	334
SspI	AATATT	1 cut(s)	300
SspMI	CTAG	2 cut(s)	239, 338
StyD4I	CCNGG	1 cut(s)	286
StyI	CCWWGG	1 cut(s)	37
TaaI	ACNGT	1 cut(s)	112
TaqI	TCGA	4 cut(s)	360, 373, 438, 480
TaqII	GACCGA	1 cut(s)	212
TasI	AATT	3 cut(s)	144, 254, 491
TfiI	GAWTC	1 cut(s)	42
Tru1I	TTAA	3 cut(s)	429, 494, 513
Tru9I	TTAA	3 cut(s)	429, 494, 513
TscAI	CASTG	2 cut(s)	117, 192
TseI	GCWGC	1 cut(s)	422
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	2 cut(s)	117, 192
Vha464I	CTTAAG	1 cut(s)	512
VpaK11BI	GGWCC	1 cut(s)	224
XapI	RAATTY	1 cut(s)	254
XceI	RCATGY	1 cut(s)	474
XhoI	CTCGAG	1 cut(s)	437
XmnI	GAANNNNTTC	1 cut(s)	131
XspI	CTAG	2 cut(s)	239, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.