Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010754

Physical Location & Seq

Genomic Coordinates Reverse (-)

50239460 .. 50243641

Gene Structure 4182 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003580

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGTCGGCTCTCAAAGACCAAGATCCTCGCGTCCATGCCATCAAAACCAAGATTCGAGTCGTCCCCAATTTCCCCAAACCCGGAATTATGTTCCAAGATATCACAACTTTGTTGCTAGACCCAAAAGCCTTCAAGGACACAATCGATATGTTCGTGGAGAGATACAAAGGCAAAAACATTTCAGTGGTTGCAGGAATTGAGGCTCGAGGTTTCATTTTTGGTCCTCCCATTGCGTTGGCAATTGGAGCAAAATTTGTTCCCCTGAGAAAACCAAGGAAATTGCCTGGTGATGTTATTTTTGAAGAGTACACTTTGGAATATGGAAGGGACCGTCTTGAGATGCATGTTGGAGCAGTGGAACAGGGTGATCGTGCTCTGGTAGTTGATGATTTAATAGCCACAGGAGGCACGCTTTGCGCTGCAATGAGTTTATTGGAACGTGTTGGAGCAGAAGTAGTTGAATGTGCCTGCCTTATTGAGTTGCCAGATTTACAGGGTCGTGAGCGATTGAATGGCAAACCATTGTATGTACTGGTGGAGTCCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003999 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006167 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009308 GO:0009507 GO:0009536 GO:0009690 GO:0009987 GO:0010817 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032261 GO:0034641 GO:0034654 GO:0034754 GO:0042445 GO:0043094 GO:0043101 GO:0043173 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044209 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046033 GO:0046390 GO:0046483 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Pribosyltran

Protein Analysis

183

Amino Acids

20.11

Weight (kDa)

6.32

Isoelectric Point (pI)

30.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pribosyltran	PF00156	41 - 164	2.1e-18	Phosphoribosyl transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0010754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12440 AT4G12440 AT4G22570
fragaria_vesca	FvH4_5g00190
malus_domestica	MD04G1085600.v1.1 MD06G1062600.v1.1
prunus_persica	Prupe.5G074000_v2.0.a1 Prupe.5G074000_v2.0.a1
pyrus_communis	pycom04g07680
rosa_chinensis	RchiOBHm_Chr7g0202681
rosa_laevigata	RLG00000003580
rosa_multiflora	Rmu_sc0002365.1_g000006
rosa_roxburghii	Rroxscaffold_3G00254400
rosa_rugosa	Rorug07G0072000 Rorug07G0072100
rosa_samantha	Rh7AG199800 Rh7BG200500 Rh7CG211300 Rh7DG206700
rosa_wichuraiana	Rw7G017490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	30
AclWI	GGATC	1 cut(s)	17
AcsI	RAATTY	1 cut(s)	251
AfaI	GTAC	2 cut(s)	308, 531
AfiI	CCNNNNNNNGG	1 cut(s)	80
AflIII	ACRYGT	1 cut(s)	439
AgsI	TTSAA	4 cut(s)	133, 302, 461, 511
AjnI	CCWGG	1 cut(s)	283
Alw21I	GWGCWC	1 cut(s)	376
AlwI	GGATC	1 cut(s)	17
Ama87I	CYCGRG	1 cut(s)	204
ApeKI	GCWGC	1 cut(s)	419
ApoI	RAATTY	1 cut(s)	251
AspLEI	GCGC	1 cut(s)	419
AspS9I	GGNCC	2 cut(s)	221, 328
AsuC2I	CCSGG	1 cut(s)	81
AsuHPI	GGTGA	2 cut(s)	299, 377
AvaI	CYCGRG	1 cut(s)	204
AvaII	GGWCC	2 cut(s)	221, 328
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	1 cut(s)	406
BccI	CCATC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	285
BcnI	CCSGG	1 cut(s)	81
BfaI	CTAG	1 cut(s)	116
BisI	GCNGC	1 cut(s)	420
BlsI	GCNGC	1 cut(s)	421
Bme1390I	CCNGG	2 cut(s)	81, 285
Bme18I	GGWCC	2 cut(s)	221, 328
BmeT110I	CYCGRG	1 cut(s)	204
BmgT120I	GGNCC	2 cut(s)	221, 328
BmiI	GGNNCC	1 cut(s)	329
BmrFI	CCNGG	2 cut(s)	81, 285
BmsI	GCATC	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	356
BpuMI	CCSGG	1 cut(s)	81
Bsa29I	ATCGAT	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	272
BsaXI	ACNNNNNCTCC	2 cut(s)	438, 468
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	537
Bse3DI	GCAATG	2 cut(s)	228, 429
BseBI	CCWGG	1 cut(s)	285
BseCI	ATCGAT	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	272
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseMI	GCAATG	2 cut(s)	228, 429
BseMII	CTCAG	1 cut(s)	254
BseNI	ACTGG	1 cut(s)	537
BseXI	GCAGC	1 cut(s)	406
Bsh1236I	CGCG	1 cut(s)	30
BshVI	ATCGAT	1 cut(s)	144
BsiHKAI	GWGCWC	1 cut(s)	376
BsiHKCI	CYCGRG	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	81
BslFI	GGGAC	3 cut(s)	47, 341, 526
BslI	CCNNNNNNNGG	1 cut(s)	80
BsmFI	GGGAC	3 cut(s)	47, 341, 526
BsoBI	CYCGRG	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp143I	GATC	2 cut(s)	22, 367
BspCNI	CTCAG	1 cut(s)	255
BspDI	ATCGAT	1 cut(s)	144
BspFNI	CGCG	1 cut(s)	30
BspLI	GGNNCC	1 cut(s)	329
BspPI	GGATC	1 cut(s)	17
BsrDI	GCAATG	2 cut(s)	228, 429
BsrI	ACTGG	1 cut(s)	537
BssECI	CCNNGG	1 cut(s)	272
BssMI	GATC	2 cut(s)	22, 367
BssT1I	CCWWGG	1 cut(s)	272
Bst2UI	CCWGG	1 cut(s)	285
Bst4CI	ACNGT	1 cut(s)	332
Bst6I	CTCTTC	1 cut(s)	297
BstAPI	GCANNNNNTGC	1 cut(s)	414
BstC8I	GCNNGC	2 cut(s)	410, 469
BstDEI	CTNAG	1 cut(s)	263
BstFNI	CGCG	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	419
BstKTI	GATC	2 cut(s)	25, 370
BstMBI	GATC	2 cut(s)	22, 367
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 414
BstNI	CCWGG	1 cut(s)	285
BstNSI	RCATGY	1 cut(s)	347
BstSCI	CCNGG	2 cut(s)	79, 283
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	406
BstX2I	RGATCY	1 cut(s)	22
BstXI	CCANNNNNNTGG	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	22
Bsu15I	ATCGAT	1 cut(s)	144
BsuTUI	ATCGAT	1 cut(s)	144
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	2 cut(s)	189, 360
Cac8I	GCNNGC	2 cut(s)	410, 469
CfoI	GCGC	1 cut(s)	419
Cfr13I	GGNCC	2 cut(s)	221, 328
ClaI	ATCGAT	1 cut(s)	144
CseI	GACGC	1 cut(s)	19
Csp6I	GTAC	2 cut(s)	307, 530
CviAII	CATG	2 cut(s)	35, 344
CviJI	RGCY	4 cut(s)	8, 128, 203, 398
CviKI_1	RGCY	4 cut(s)	8, 128, 203, 398
CviQI	GTAC	2 cut(s)	307, 530
DdeI	CTNAG	1 cut(s)	263
DpnI	GATC	2 cut(s)	24, 369
DpnII	GATC	2 cut(s)	22, 367
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Eco130I	CCWWGG	1 cut(s)	272
Eco32I	GATATC	1 cut(s)	100
Eco47I	GGWCC	2 cut(s)	221, 328
Eco88I	CYCGRG	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	283
EcoRV	GATATC	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	272
EcoT22I	ATGCAT	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	272
FaeI	CATG	2 cut(s)	38, 347
FaiI	YATR	6 cut(s)	36, 89, 149, 321, 345, 528
FaqI	GGGAC	3 cut(s)	47, 341, 526
FatI	CATG	2 cut(s)	34, 343
Fnu4HI	GCNGC	1 cut(s)	420
Fsp4HI	GCNGC	1 cut(s)	420
FspBI	CTAG	1 cut(s)	116
GlaI	GCGC	1 cut(s)	418
GluI	GCNGC	1 cut(s)	420
HapII	CCGG	1 cut(s)	81
HgaI	GACGC	1 cut(s)	19
HhaI	GCGC	1 cut(s)	419
Hin1II	CATG	2 cut(s)	38, 347
Hin6I	GCGC	1 cut(s)	417
HinP1I	GCGC	1 cut(s)	417
HinfI	GANTC	3 cut(s)	52, 57, 539
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	2 cut(s)	299, 377
Hpy166II	GTNNAC	1 cut(s)	309
Hpy188III	TCNNGA	2 cut(s)	335, 500
Hpy8I	GTNNAC	1 cut(s)	309
HpyAV	CCTTC	2 cut(s)	139, 318
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4IV	ACGT	1 cut(s)	439
HpyCH4V	TGCA	3 cut(s)	191, 343, 422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 414
HpyF3I	CTNAG	1 cut(s)	263
HpySE526I	ACGT	1 cut(s)	439
Hsp92II	CATG	2 cut(s)	38, 347
HspAI	GCGC	1 cut(s)	417
Kzo9I	GATC	2 cut(s)	22, 367
LmnI	GCTCC	3 cut(s)	245, 350, 446
Lsp1109I	GCAGC	1 cut(s)	406
LweI	GCATC	1 cut(s)	330
MaeI	CTAG	1 cut(s)	116
MaeII	ACGT	1 cut(s)	439
MalI	GATC	2 cut(s)	24, 369
MboI	GATC	2 cut(s)	22, 367
MboII	GAAGA	1 cut(s)	314
MfeI	CAATTG	1 cut(s)	240
MflI	RGATCY	1 cut(s)	22
MhlI	GDGCHC	1 cut(s)	376
MluCI	AATT	6 cut(s)	67, 84, 195, 240, 251, 278
MlyI	GAGTC	2 cut(s)	66, 548
MmeI	TCCRAC	2 cut(s)	328, 424
MnlI	CCTC	5 cut(s)	36, 193, 200, 234, 398
Mph1103I	ATGCAT	1 cut(s)	345
MseI	TTAA	1 cut(s)	392
MslI	CAYNNNNRTG	1 cut(s)	182
MspI	CCGG	1 cut(s)	81
MspR9I	CCNGG	2 cut(s)	81, 285
MunI	CAATTG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	285
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	2 cut(s)	245, 414
NciI	CCSGG	1 cut(s)	81
NdeII	GATC	2 cut(s)	22, 367
NlaIII	CATG	2 cut(s)	38, 347
NlaIV	GGNNCC	1 cut(s)	329
NsiI	ATGCAT	1 cut(s)	345
NspI	RCATGY	1 cut(s)	347
PaeR7I	CTCGAG	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	1 cut(s)	421
PleI	GAGTC	2 cut(s)	65, 547
PpsI	GAGTC	2 cut(s)	65, 547
Psp6I	CCWGG	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	283
PspN4I	GGNNCC	1 cut(s)	329
PspPI	GGNCC	2 cut(s)	221, 328
PspXI	VCTCGAGB	1 cut(s)	204
PsuI	RGATCY	1 cut(s)	22
RsaI	GTAC	2 cut(s)	308, 531
RsaNI	GTAC	2 cut(s)	307, 530
RseI	CAYNNNNRTG	1 cut(s)	182
SaqAI	TTAA	1 cut(s)	392
SatI	GCNGC	1 cut(s)	420
Sau3AI	GATC	2 cut(s)	22, 367
Sau96I	GGNCC	2 cut(s)	221, 328
SchI	GAGTC	2 cut(s)	66, 548
ScrFI	CCNGG	2 cut(s)	81, 285
SduI	GDGCHC	1 cut(s)	376
SetI	ASST	2 cut(s)	211, 442
SfaNI	GCATC	1 cut(s)	330
Sfr274I	CTCGAG	1 cut(s)	204
SinI	GGWCC	2 cut(s)	221, 328
SlaI	CTCGAG	1 cut(s)	204
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	2 cut(s)	204, 335
SmoI	CTYRAG	2 cut(s)	204, 335
Sse9I	AATT	6 cut(s)	67, 84, 195, 240, 251, 278
SspMI	CTAG	1 cut(s)	116
StyD4I	CCNGG	2 cut(s)	79, 283
StyI	CCWWGG	1 cut(s)	272
TaaI	ACNGT	1 cut(s)	332
TaiI	ACGT	1 cut(s)	442
TaqI	TCGA	3 cut(s)	55, 144, 205
TasI	AATT	6 cut(s)	67, 84, 195, 240, 251, 278
TatI	WGTACW	2 cut(s)	306, 529
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TscAI	CASTG	2 cut(s)	189, 360
TseI	GCWGC	1 cut(s)	419
TspDTI	ATGAA	1 cut(s)	202
TspRI	CASTG	2 cut(s)	189, 360
VpaK11BI	GGWCC	2 cut(s)	221, 328
XapI	RAATTY	1 cut(s)	251
XceI	RCATGY	1 cut(s)	347
XhoI	CTCGAG	1 cut(s)	204
XspI	CTAG	1 cut(s)	116
Zsp2I	ATGCAT	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.