Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0010754

Physical Location & Seq

Genomic Coordinates Forward (+)

8489664 .. 8494265

Gene Structure 4602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g07680.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGCCCTTTTTCTCTGATCTCTGTGTACCTTGCGCCCCTTCTCTCTCACTCTGTTCTGTCGAAGAAGTACACTCTATCTTGCAGGGGTCTCAGAAGGAACTGAGTTTTTGTGAAAGAAACTTGCATAAACAGAAAGCAAGTTCTGCTGAGTCTCCTGCATACACAACAATGTTGGTTTTGAAAGACGAAGATCCTCGTATCCATGGCATTAAAACCAAGATTCGTGTCGTCCCAAATTTCCCCAAACCTGGAATTATGTTCCAAGATATCACAACTTTATTACTTGACCCAAAAGCCTTTAAGGACACAATCGATTTGTTCGTTGAGAGATACAAAGGCAAAAACATTTCAGTGGTTGCAGGAATTGAGGCACGAGGTTTTATCTTTGGTCCTCCGATAGCATTGGCAATAGGAGCAAAGTTCGTTCCCCTGAGAAAACCAAAGAAGCTGCCTGGTGACGTTATTTTTGAAGAATACACTCTGGAATATGGAAGTGACCGTCTTGAGATGCATGTTGGAGCAGTAGAACTTGGCGAGCGTGCTCTGGTGGTAGATGATTTAATAGCCACTGGGGGCACACTGTGTGCTGCAATGAATTTATTGGAACGCGTTGGAGCAGAAGTGGTCGAATGTGCGTGCTTAATTGAATTGCCAGATTTACAGGGACGTGAGAGGTTGAACGGAAAGCCACTGTATGTACTAGTTGAATACCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003999 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006167 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009308 GO:0009507 GO:0009536 GO:0009690 GO:0009987 GO:0010817 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032261 GO:0034641 GO:0034654 GO:0034754 GO:0042445 GO:0043094 GO:0043101 GO:0043173 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044209 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046033 GO:0046390 GO:0046483 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Pribosyltran

Protein Analysis

239

Amino Acids

26.26

Weight (kDa)

5.5

Isoelectric Point (pI)

35.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12440 AT4G12440 AT4G22570
fragaria_vesca	FvH4_5g00190
malus_domestica	MD04G1085600.v1.1 MD06G1062600.v1.1
prunus_persica	Prupe.5G074000_v2.0.a1 Prupe.5G074000_v2.0.a1
pyrus_communis	pycom04g07680
rosa_chinensis	RchiOBHm_Chr7g0202681
rosa_laevigata	RLG00000003580
rosa_multiflora	Rmu_sc0002365.1_g000006
rosa_roxburghii	Rroxscaffold_3G00254400
rosa_rugosa	Rorug07G0072000 Rorug07G0072100
rosa_samantha	Rh7AG199800 Rh7BG200500 Rh7CG211300 Rh7DG206700
rosa_wichuraiana	Rw7G017490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	609
AclWI	GGATC	1 cut(s)	185
AcsI	RAATTY	2 cut(s)	235, 595
AdeI	CACNNNGTG	2 cut(s)	582, 584
AfaI	GTAC	3 cut(s)	27, 69, 699
AfiI	CCNNNNNNNGG	1 cut(s)	248
AflIII	ACRYGT	1 cut(s)	607
AgsI	TTSAA	5 cut(s)	181, 470, 647, 679, 707
AhlI	ACTAGT	1 cut(s)	700
AjiI	CACGTC	1 cut(s)	668
AjnI	CCWGG	2 cut(s)	247, 451
AluBI	AGCT	1 cut(s)	448
AluI	AGCT	1 cut(s)	448
Alw21I	GWGCWC	1 cut(s)	544
Alw26I	GTCTC	2 cut(s)	93, 156
AlwI	GGATC	1 cut(s)	185
ApeKI	GCWGC	2 cut(s)	448, 587
ApoI	RAATTY	2 cut(s)	235, 595
ArsI	GACNNNNNNTTYG	2 cut(s)	449, 481
AspLEI	GCGC	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	389
AsuHPI	GGTGA	1 cut(s)	467
AvaII	GGWCC	1 cut(s)	389
BaeGI	GKGCMC	1 cut(s)	578
BauI	CACGAG	1 cut(s)	372
Bbv12I	GWGCWC	1 cut(s)	544
BbvI	GCAGC	2 cut(s)	435, 574
BciT130I	CCWGG	2 cut(s)	249, 453
BciVI	GTATCC	1 cut(s)	209
BcoDI	GTCTC	2 cut(s)	93, 156
BcuI	ACTAGT	1 cut(s)	700
BfaI	CTAG	1 cut(s)	701
BfuI	GTATCC	1 cut(s)	209
BisI	GCNGC	2 cut(s)	449, 588
BlsI	GCNGC	2 cut(s)	450, 589
Bme1390I	CCNGG	2 cut(s)	249, 453
Bme18I	GGWCC	1 cut(s)	389
BmgBI	CACGTC	1 cut(s)	668
BmgT120I	GGNCC	1 cut(s)	389
BmrFI	CCNGG	2 cut(s)	249, 453
BmrI	ACTGGG	1 cut(s)	579
BmsI	GCATC	1 cut(s)	498
BmuI	ACTGGG	1 cut(s)	579
BpuEI	CTTGAG	1 cut(s)	524
Bsa29I	ATCGAT	1 cut(s)	312
BsaI	GGTCTC	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	202
BsaXI	ACNNNNNCTCC	2 cut(s)	606, 636
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse1I	ACTGG	1 cut(s)	574
Bse3DI	GCAATG	1 cut(s)	597
BseBI	CCWGG	2 cut(s)	249, 453
BseCI	ATCGAT	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	202
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMI	GCAATG	1 cut(s)	597
BseMII	CTCAG	4 cut(s)	92, 104, 138, 422
BseNI	ACTGG	1 cut(s)	574
BseSI	GKGCMC	1 cut(s)	578
BseXI	GCAGC	2 cut(s)	435, 574
Bsh1236I	CGCG	1 cut(s)	609
BshVI	ATCGAT	1 cut(s)	312
BsiHKAI	GWGCWC	1 cut(s)	544
BslFI	GGGAC	2 cut(s)	215, 678
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	2 cut(s)	93, 156
BsmFI	GGGAC	2 cut(s)	215, 678
Bso31I	GGTCTC	1 cut(s)	93
Bsp1286I	GDGCHC	2 cut(s)	544, 578
Bsp143I	GATC	2 cut(s)	16, 190
Bsp19I	CCATGG	1 cut(s)	202
BspCNI	CTCAG	4 cut(s)	93, 103, 139, 423
BspDI	ATCGAT	1 cut(s)	312
BspFNI	CGCG	1 cut(s)	609
BspPI	GGATC	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	93
BsrDI	GCAATG	1 cut(s)	597
BsrI	ACTGG	1 cut(s)	574
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	2 cut(s)	16, 190
BssSI	CACGAG	1 cut(s)	372
BssT1I	CCWWGG	1 cut(s)	202
Bst2BI	CACGAG	1 cut(s)	372
Bst2UI	CCWGG	2 cut(s)	249, 453
Bst4CI	ACNGT	3 cut(s)	500, 582, 693
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstC8I	GCNNGC	3 cut(s)	536, 540, 637
BstDEI	CTNAG	4 cut(s)	90, 101, 147, 431
BstDSI	CCRYGG	1 cut(s)	202
BstFNI	CGCG	1 cut(s)	609
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	2 cut(s)	19, 193
BstMAI	GTCTC	2 cut(s)	93, 156
BstMBI	GATC	2 cut(s)	16, 190
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 413
BstNI	CCWGG	2 cut(s)	249, 453
BstNSI	RCATGY	1 cut(s)	515
BstSCI	CCNGG	2 cut(s)	247, 451
BstSLI	GKGCMC	1 cut(s)	578
BstUI	CGCG	1 cut(s)	609
BstV1I	GCAGC	2 cut(s)	435, 574
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
Bsu15I	ATCGAT	1 cut(s)	312
BsuI	GTATCC	1 cut(s)	209
BsuTUI	ATCGAT	1 cut(s)	312
BtgI	CCRYGG	1 cut(s)	202
BtrI	CACGTC	1 cut(s)	668
BtsIMutI	CAGTG	4 cut(s)	357, 567, 578, 689
Cac8I	GCNNGC	3 cut(s)	536, 540, 637
CfoI	GCGC	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	389
ClaI	ATCGAT	1 cut(s)	312
Csp6I	GTAC	3 cut(s)	26, 68, 698
CviAII	CATG	2 cut(s)	203, 512
CviJI	RGCY	4 cut(s)	296, 448, 566, 688
CviKI_1	RGCY	4 cut(s)	296, 448, 566, 688
CviQI	GTAC	3 cut(s)	26, 68, 698
DdeI	CTNAG	4 cut(s)	90, 101, 147, 431
DpnI	GATC	2 cut(s)	18, 192
DpnII	GATC	2 cut(s)	16, 190
DraIII	CACNNNGTG	2 cut(s)	582, 584
Eco130I	CCWWGG	1 cut(s)	202
Eco31I	GGTCTC	1 cut(s)	93
Eco32I	GATATC	1 cut(s)	268
Eco47I	GGWCC	1 cut(s)	389
EcoRII	CCWGG	2 cut(s)	247, 451
EcoRV	GATATC	1 cut(s)	268
EcoT14I	CCWWGG	1 cut(s)	202
EcoT22I	ATGCAT	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	202
FaeI	CATG	2 cut(s)	206, 515
FaiI	YATR	7 cut(s)	126, 160, 204, 257, 489, 513, 696
FaqI	GGGAC	2 cut(s)	215, 678
FatI	CATG	2 cut(s)	202, 511
Fnu4HI	GCNGC	2 cut(s)	449, 588
Fsp4HI	GCNGC	2 cut(s)	449, 588
FspBI	CTAG	1 cut(s)	701
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	2 cut(s)	449, 588
HhaI	GCGC	1 cut(s)	35
Hin1II	CATG	2 cut(s)	206, 515
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HinfI	GANTC	2 cut(s)	149, 220
HphI	GGTGA	1 cut(s)	467
Hpy166II	GTNNAC	2 cut(s)	26, 70
Hpy188I	TCNGA	3 cut(s)	16, 93, 396
Hpy188III	TCNNGA	2 cut(s)	482, 503
Hpy8I	GTNNAC	2 cut(s)	26, 70
HpyAV	CCTTC	2 cut(s)	48, 88
HpyCH4III	ACNGT	3 cut(s)	500, 582, 693
HpyCH4IV	ACGT	2 cut(s)	459, 667
HpyCH4V	TGCA	6 cut(s)	82, 124, 158, 359, 511, 590
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 413
HpyF3I	CTNAG	4 cut(s)	90, 101, 147, 431
HpySE526I	ACGT	2 cut(s)	459, 667
Hsp92II	CATG	2 cut(s)	206, 515
HspAI	GCGC	1 cut(s)	33
Kzo9I	GATC	2 cut(s)	16, 190
LmnI	GCTCC	3 cut(s)	413, 518, 614
Lsp1109I	GCAGC	2 cut(s)	435, 574
LweI	GCATC	1 cut(s)	498
MaeI	CTAG	1 cut(s)	701
MaeII	ACGT	2 cut(s)	459, 667
MaeIII	GTNAC	2 cut(s)	455, 494
MalI	GATC	2 cut(s)	18, 192
MboI	GATC	2 cut(s)	16, 190
MboII	GAAGA	3 cut(s)	74, 200, 482
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	2 cut(s)	544, 578
MluCI	AATT	6 cut(s)	235, 252, 363, 595, 642, 647
MluI	ACGCGT	1 cut(s)	607
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	2 cut(s)	496, 592
MnlI	CCTC	5 cut(s)	204, 361, 368, 402, 666
Mph1103I	ATGCAT	1 cut(s)	513
MseI	TTAA	4 cut(s)	210, 300, 560, 641
MslI	CAYNNNNRTG	2 cut(s)	167, 350
MspR9I	CCNGG	2 cut(s)	249, 453
MvaI	CCWGG	2 cut(s)	249, 453
MvnI	CGCG	1 cut(s)	609
MwoI	GCNNNNNNNGC	2 cut(s)	143, 413
NcoI	CCATGG	1 cut(s)	202
NdeII	GATC	2 cut(s)	16, 190
NlaIII	CATG	2 cut(s)	206, 515
NmuCI	GTSAC	2 cut(s)	455, 494
NsiI	ATGCAT	1 cut(s)	513
NspI	RCATGY	1 cut(s)	515
PcsI	WCGNNNNNNNCGW	1 cut(s)	318
PfeI	GAWTC	1 cut(s)	220
PkrI	GCNGC	2 cut(s)	450, 589
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
Psp6I	CCWGG	2 cut(s)	247, 451
PspGI	CCWGG	2 cut(s)	247, 451
PspPI	GGNCC	1 cut(s)	389
PsuI	RGATCY	1 cut(s)	190
RsaI	GTAC	3 cut(s)	27, 69, 699
RsaNI	GTAC	3 cut(s)	26, 68, 698
RseI	CAYNNNNRTG	2 cut(s)	167, 350
SaqAI	TTAA	4 cut(s)	210, 300, 560, 641
SatI	GCNGC	2 cut(s)	449, 588
Sau3AI	GATC	2 cut(s)	16, 190
Sau96I	GGNCC	1 cut(s)	389
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	2 cut(s)	249, 453
SduI	GDGCHC	2 cut(s)	544, 578
SetI	ASST	7 cut(s)	31, 250, 379, 450, 462, 670, 677
SfaNI	GCATC	1 cut(s)	498
SinI	GGWCC	1 cut(s)	389
SmiMI	CAYNNNNRTG	2 cut(s)	167, 350
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
SpeI	ACTAGT	1 cut(s)	700
Sse9I	AATT	6 cut(s)	235, 252, 363, 595, 642, 647
SspMI	CTAG	1 cut(s)	701
StyD4I	CCNGG	2 cut(s)	247, 451
StyI	CCWWGG	1 cut(s)	202
TaaI	ACNGT	3 cut(s)	500, 582, 693
TaiI	ACGT	2 cut(s)	462, 670
TaqI	TCGA	3 cut(s)	60, 312, 627
TasI	AATT	6 cut(s)	235, 252, 363, 595, 642, 647
TatI	WGTACW	2 cut(s)	67, 697
TfiI	GAWTC	1 cut(s)	220
Tru1I	TTAA	4 cut(s)	210, 300, 560, 641
Tru9I	TTAA	4 cut(s)	210, 300, 560, 641
TscAI	CASTG	4 cut(s)	357, 574, 585, 696
TseFI	GTSAC	2 cut(s)	455, 494
TseI	GCWGC	2 cut(s)	448, 587
Tsp45I	GTSAC	2 cut(s)	455, 494
TspDTI	ATGAA	1 cut(s)	608
TspGWI	ACGGA	1 cut(s)	696
TspRI	CASTG	4 cut(s)	357, 574, 585, 696
VpaK11BI	GGWCC	1 cut(s)	389
XapI	RAATTY	2 cut(s)	235, 595
XceI	RCATGY	1 cut(s)	515
XspI	CTAG	1 cut(s)	701
Zsp2I	ATGCAT	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.