Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000225

Physical Location & Seq

Genomic Coordinates Forward (+)

5514104 .. 5518789

Gene Structure 4686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0072100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2862 bp

ATGTCCGACCCCGAAGAGGACCGAGCTCCCGCCATTTTCCCCAAGTCAAAGAACCTGGACGCCATGGACTTTGATATCGACGTTTCCTGGCCCTTGGATCAGATCCAGTTCCTCTCTAATCCCACCTCCCCGCTTCTCTTCTCCCCCGCCGACGACCCCTGTTCTCCTCTCTGGGCCTTTCCCGATGTCAATCATCATGACAACCTCGCCGGCGGAGGCCGAGCTCTTCCCGACCCGGCCCAATTCGTTTCCGATGCTAATCCGGTTGTGGAGAAGCCAAGAGAGAACGAGGACAACAGAATGCTTCCATCCCCATTTTTGGGACTGGACCCAAATCCAGATGGTTATTTTCTAATTAAGGAGAGAATCACTCAAGCATTGCGGTACCTCAAGGAGTCGAGTGATCAACATGTACTAGCTCAGGTTTGGGCACCGGTGAAGGATGGAAGTCGGTATGTACTCACAACCTCAGGGCAACCCTTTGTGCTGGATCCACATGATGGACTTCATCAGTATAGGATGGTTTCTCTGATGTATATGTTTTCTGTGGATGGGGAGAATGATGGAGTGCTTGGACTTCCTGGCCGTGTTTTCCAGCAAAAGATGCCCGAATGGACTCCAAATGTTCAGTACTACTCCATCAAAGAGTATCCACGGCTTGATCATGCTCAGCACTACAATGTTCAGGGAACCTTAGCTTTGCCCATATTTGAACCCTCTGGGCGGTCCTGTATTGGTGTAATTGAGCTCATAATGACTTCTCAGAAGATCAACTATGCTCCTGAGGTTGATAAAATTTGCAAAGCACTTGAGGCAGTAAGCTTGAAAAGTTCAGAGATATTGGATCATACAAGCACACAGATCCAGATACGCAATGAAGGTCGCCAAAATGCATTAACTGAAATCTTGGAGATACTGACAATGGTATGTGAAACTCATAAATTACCACTGGCTCAGACATGGGTTCCATGTATGCATCGCAATGTTTTGGCTTATGGTGGTGGCATGAAGAAGAGCTGTACAAGCTTTGATGGTAGCTGCATGGAACAGGTCTGCATGTCCACAACAGATGTGGCAGTCTACATTGTAGATGCTCACATGTGGGGTTTTCGAGAGGCCTGTGTAGAGCATCACTTACAAAAGGGTCAAGGGGTTGCTGGGAGGGCATTTTTGTCCCGTAATGCATGCTTCTGCAGAGACATTAGCCAGTTCCGCAAAACAGAATACCCTTTAGTACACTACGCACGCATGTTTGGGTTAACCAGCTCATTTGCAATCTGTTTACAGAGCACTCACACTGGAAATGATGATTACATTCTAGAATTTTTTCTGCCGCCTAGCATCAGAGACAGTTGTGAACAGCAGACTTTATTGGGCTCCATATTGGCTATAGTGAAAGATCATTGCCAGAATCTTAAGGTTGCTTCTGGAATTGGACTTGCAGAGGAAGGAACAGTTGAGATTGTTCAAGCTTCTATAAATGAGGGACTTGACTCAAGACTTGAATGCATACAGATACCCTGTTCCGTGGAGCCACTTCCAGGGTCTTCCTTACCTAACAGAGAAGAGATGGTGCGCCTAAATCCAGCAAAACCACAGTTAATGGTGGACATTGATGCTATTAATGATGAGAGGAATGCAGTTCACAACGGTGGAAAAAACAACATTTCTGTTCCCGAGAATAAAGACATAAAAAAGACATCAGAGAGGAAGCGTGGGAAAACTGAGAAATCAATTAGTCTAGAGGTTCTTCAACAATATTTTGCTGGGAGTCTTAAAGATGCTGCAAAGAGCCTTGGAGTTTGTCCTACCACAATGAAGCGCATCTGTAGGCAGCATGGAATCTCCCGCTGGCCATCTCGCAAGATCAACAAGGTCAACCGTTCTCTCAGTAAGCTAAAGCTTGTAATTGAATCTGTCCAAGGTGGTGAAGGAGCATTTGGTTTGAGTCCTCTTACTACAAGTCCACTTACTGGTGCTGTTGGCTCCATTTCTCAACCTTATACAAGCTCTCAACCCTATGAAGTTCAGGGAGAAAAGAAAGATTCACCCAGCTCTAGTACACCAGGAAGAGAGGGACAGGCTGGGATAGAAGATCCATTGCAAGATATTGGTAATGGCTCAAACTCATCCAAAACAGGTAGTGGCTCAAGGGAGGCGAGTACTGGTACCCCTACTTCTCATGGTTCATGCCTAGGTAGTCCGGCAAATGGAAGTGCAATGGTAAAGGACCCCTTTGTTTCTTCCATCCATGAGCAATTCGTTGAAGTTTATCGCTCCCCGGAATCAGCATTTCGACCACCAGAGGAACTGTATGTACCAGTTCCGTGCACAATACCACATGCTCTCCTCATGACAGAACCTGAAGAACCATCTAGAGGAATGCTACTAGAGGATGCTGGAAGTTCAAAAGACTTGAGAAATCTGTGTCCTTTTACCGATATAACTGTGCATGAGCAAGTTCCAGAAGTTTTCTGGACAGACCCCCCATGTCCTGATTCGGCTCCTAACCAATCCATGTCTACTCTTGCTTACACAATGCCTCATAACACATCTTTACAAGAAATGAGGAGTGTAACCATAAAGGCAGCATATAAAGATGATATCATTAGGTTTCGGATCTCTATGAGTTCTTGTATAGTGGATTTGAAAGAGGAAGTGGCAAAGAGATTAAAGTTGGAAGTGGGCACATTTGATATGAAGTATATGGATGATGACCTTGAGTGGGTTCTGATAGCTTGTGATGCAGACCTGCAGGAATGCATGGAAATTTGCAGATCATCAGGCAGCAATATGATCAGACTCTCTGTTCATGACATTCTGTCCAATCTTGGAAGCTCTTCTGAGAGCACTGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003999 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006167 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009308 GO:0009507 GO:0009536 GO:0009690 GO:0009987 GO:0010817 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032261 GO:0034641 GO:0034654 GO:0034754 GO:0042445 GO:0043094 GO:0043101 GO:0043173 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044209 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046033 GO:0046390 GO:0046483 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Pribosyltran

Protein Analysis

953

Amino Acids

105.27

Weight (kDa)

5.19

Isoelectric Point (pI)

56.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAF_NLP	PF22922	138 - 272	8.1e-06	NLP protein GAF domain
GAF_NLP	PF22922	290 - 472	4.9e-78	NLP protein GAF domain
RWP-RK	PF02042	578 - 625	2.1e-23	RWP-RK domain
PB1	PF00564	859 - 939	1.5e-20	PB1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49430 AT1G49430
fragaria_vesca	FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica	MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica	Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis	pycom10g06680
rosa_chinensis	RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata	RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora	Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii	Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa	Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha	Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana	Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2760
Acc65I	GGTACC	2 cut(s)	384, 2168
AccB1I	GGYRCC	3 cut(s)	384, 430, 2168
AccB7I	CCANNNNNTGG	2 cut(s)	500, 1973
AccI	GTMKAC	2 cut(s)	1080, 2522
AciI	CCGC	9 cut(s)	30, 131, 147, 213, 382, 724, 1213, 1334, 1849
AclWI	GGATC	8 cut(s)	97, 105, 485, 498, 852, 856, 2090, 2627
AcoI	YGGCCR	2 cut(s)	583, 1853
AcsI	RAATTY	3 cut(s)	795, 1322, 2769
AcuI	CTGAAG	1 cut(s)	2385
AcyI	GRCGYC	1 cut(s)	60
AflII	CTTAAG	1 cut(s)	1415
AflIII	ACRYGT	2 cut(s)	409, 1098
AgeI	ACCGGT	1 cut(s)	433
AgsI	TTSAA	9 cut(s)	713, 826, 1469, 1505, 1754, 1913, 2267, 2409, 2650
AhdI	GACNNNNNGTC	1 cut(s)	2821
AjnI	CCWGG	5 cut(s)	54, 86, 580, 1540, 2065
AjuI	GAANNNNNNNTTGG	2 cut(s)	1923, 1955
AleI	CACNNNNGTG	1 cut(s)	1650
Alw21I	GWGCWC	6 cut(s)	28, 226, 750, 1292, 2333, 2852
Alw26I	GTCTC	2 cut(s)	1191, 1341
Alw44I	GTGCAC	1 cut(s)	2329
AlwI	GGATC	8 cut(s)	97, 105, 485, 498, 852, 856, 2090, 2627
AlwNI	CAGNNNCTG	1 cut(s)	2363
Ama87I	CYCGRG	1 cut(s)	1676
AoxI	GGCC	7 cut(s)	89, 174, 217, 237, 583, 1116, 1853
ApaLI	GTGCAC	1 cut(s)	2329
ApeKI	GCWGC	5 cut(s)	1038, 1784, 1834, 2588, 2787
ApoI	RAATTY	3 cut(s)	795, 1322, 2769
AseI	ATTAAT	1 cut(s)	1623
AsiGI	ACCGGT	1 cut(s)	433
Asp700I	GAANNNNTTC	2 cut(s)	1326, 2839
Asp718I	GGTACC	2 cut(s)	384, 2168
AspA2I	CCTAGG	1 cut(s)	2194
AspLEI	GCGC	2 cut(s)	1578, 1824
AspS9I	GGNCC	7 cut(s)	19, 90, 174, 238, 328, 726, 2230
AsuC2I	CCSGG	2 cut(s)	236, 2282
AsuHPI	GGTGA	3 cut(s)	448, 1940, 2040
AvaI	CYCGRG	1 cut(s)	1676
AvaII	GGWCC	4 cut(s)	19, 328, 726, 2230
AvrII	CCTAGG	1 cut(s)	2194
AxyI	CCTNAGG	2 cut(s)	469, 783
BaeGI	GKGCMC	3 cut(s)	433, 2333, 2690
BalI	TGGCCA	1 cut(s)	1855
BamHI	GGATCC	1 cut(s)	490
BanI	GGYRCC	3 cut(s)	384, 430, 2168
BanII	GRGCYC	4 cut(s)	28, 226, 750, 1379
BarI	GAAGNNNNNNTAC	2 cut(s)	2161, 2193
BbsI	GAAGAC	1 cut(s)	1539
Bbv12I	GWGCWC	6 cut(s)	28, 226, 750, 1292, 2333, 2852
BbvI	GCAGC	5 cut(s)	1025, 1771, 1846, 2600, 2799
BceAI	ACGGC	2 cut(s)	570, 671
BciT130I	CCWGG	5 cut(s)	56, 88, 582, 1542, 2067
BciVI	GTATCC	1 cut(s)	660
BclI	TGATCA	3 cut(s)	403, 661, 2796
BcnI	CCSGG	2 cut(s)	236, 2282
BcoDI	GTCTC	2 cut(s)	1191, 1341
BfaI	CTAG	8 cut(s)	416, 1319, 1338, 1742, 2058, 2195, 2376, 2390
BfmI	CTRYAG	4 cut(s)	1192, 1389, 1828, 2753
BfrI	CTTAAG	1 cut(s)	1415
BfuAI	ACCTGC	1 cut(s)	2760
BfuI	GTATCC	1 cut(s)	660
BisI	GCNGC	6 cut(s)	1039, 1334, 1785, 1835, 2589, 2788
BlnI	CCTAGG	1 cut(s)	2194
BlpI	GCTNAGC	1 cut(s)	669
BlsI	GCNGC	6 cut(s)	1040, 1335, 1786, 1836, 2590, 2789
BmcAI	AGTACT	2 cut(s)	632, 2164
Bme1390I	CCNGG	7 cut(s)	56, 88, 236, 582, 1542, 2067, 2282
Bme18I	GGWCC	4 cut(s)	19, 328, 726, 2230
BmeRI	GACNNNNNGTC	1 cut(s)	2821
BmeT110I	CYCGRG	1 cut(s)	1676
BmgT120I	GGNCC	7 cut(s)	19, 90, 174, 238, 328, 726, 2230
BmrFI	CCNGG	7 cut(s)	56, 88, 236, 582, 1542, 2067, 2282
BpiI	GAAGAC	1 cut(s)	1539
BplI	GAGNNNNNCTC	2 cut(s)	355, 387
Bpu10I	CCTNAGC	2 cut(s)	420, 694
Bpu1102I	GCTNAGC	1 cut(s)	669
BpuEI	CTTGAG	7 cut(s)	357, 374, 830, 1480, 2134, 2437, 2741
BpuMI	CCSGG	2 cut(s)	236, 2282
BsaBI	GATNNNNATC	2 cut(s)	189, 258
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	9 cut(s)	63, 93, 653, 1527, 1541, 1795, 1921, 2194, 2280
BsaWI	WCCGGW	2 cut(s)	262, 433
BsaXI	ACNNNNNCTCC	2 cut(s)	2331, 2361
Bse118I	RCCGGY	2 cut(s)	209, 433
Bse1I	ACTGG	8 cut(s)	106, 330, 954, 1207, 1303, 1978, 2170, 2321
Bse21I	CCTNAGG	2 cut(s)	469, 783
Bse3DI	GCAATG	6 cut(s)	377, 880, 988, 1402, 2099, 2226
Bse8I	GATNNNNATC	2 cut(s)	189, 258
BseBI	CCWGG	5 cut(s)	56, 88, 582, 1542, 2067
BseDI	CCNNGG	9 cut(s)	63, 93, 653, 1527, 1541, 1795, 1921, 2194, 2280
BseGI	GGATG	8 cut(s)	308, 448, 525, 556, 2129, 2247, 2401, 2716
BseJI	GATNNNNATC	2 cut(s)	189, 258
BseMI	GCAATG	6 cut(s)	377, 880, 988, 1402, 2099, 2226
BseNI	ACTGG	8 cut(s)	106, 330, 954, 1207, 1303, 1978, 2170, 2321
BseRI	GAGGAG	3 cut(s)	156, 2339, 2584
BseSI	GKGCMC	3 cut(s)	433, 2333, 2690
BseXI	GCAGC	5 cut(s)	1025, 1771, 1846, 2600, 2799
BseYI	CCCAGC	4 cut(s)	1157, 1766, 2051, 2084
BshFI	GGCC	7 cut(s)	91, 176, 219, 239, 585, 1118, 1855
BshNI	GGYRCC	3 cut(s)	384, 430, 2168
BshTI	ACCGGT	1 cut(s)	433
BsiHKAI	GWGCWC	6 cut(s)	28, 226, 750, 1292, 2333, 2852
BsiHKCI	CYCGRG	1 cut(s)	1676
BsiSI	CCGG	6 cut(s)	210, 236, 263, 434, 2204, 2282
BslFI	GGGAC	4 cut(s)	336, 1159, 1500, 2091
BsmAI	GTCTC	2 cut(s)	1191, 1341
BsmFI	GGGAC	4 cut(s)	336, 1159, 1500, 2091
BsmI	GAATGC	5 cut(s)	306, 1511, 1642, 2388, 2765
BsnI	GGCC	7 cut(s)	91, 176, 219, 239, 585, 1118, 1855
BsoBI	CYCGRG	1 cut(s)	1676
Bsp1286I	GDGCHC	9 cut(s)	28, 226, 433, 750, 1292, 1379, 2333, 2690, 2852
Bsp1407I	TGTACA	1 cut(s)	1019
Bsp1720I	GCTNAGC	1 cut(s)	669
Bsp19I	CCATGG	1 cut(s)	63
BspACI	CCGC	9 cut(s)	30, 131, 147, 213, 382, 724, 1213, 1334, 1849
BspANI	GGCC	7 cut(s)	91, 176, 219, 239, 585, 1118, 1855
BspHI	TCATGA	3 cut(s)	196, 2352, 2812
BspMAI	CTGCAG	2 cut(s)	1196, 2757
BspMI	ACCTGC	1 cut(s)	2760
BspPI	GGATC	8 cut(s)	97, 105, 485, 498, 852, 856, 2090, 2627
BspQI	GCTCTTC	3 cut(s)	231, 1007, 2845
BspT107I	GGYRCC	3 cut(s)	384, 430, 2168
BspTI	CTTAAG	1 cut(s)	1415
BsrDI	GCAATG	6 cut(s)	377, 880, 988, 1402, 2099, 2226
BsrFI	RCCGGY	2 cut(s)	209, 433
BsrGI	TGTACA	1 cut(s)	1019
BsrI	ACTGG	8 cut(s)	106, 330, 954, 1207, 1303, 1978, 2170, 2321
BssAI	RCCGGY	2 cut(s)	209, 433
BssECI	CCNNGG	9 cut(s)	63, 93, 653, 1527, 1541, 1795, 1921, 2194, 2280
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	5 cut(s)	63, 93, 1795, 1921, 2194
Bst2UI	CCWGG	5 cut(s)	56, 88, 582, 1542, 2067
Bst4CI	ACNGT	7 cut(s)	1352, 1456, 1599, 1652, 1883, 2313, 2449
Bst6I	CTCTTC	7 cut(s)	9, 143, 231, 1007, 1560, 2065, 2845
BstACI	GRCGYC	1 cut(s)	60
BstAFI	CTTAAG	1 cut(s)	1415
BstAPI	GCANNNNNTGC	1 cut(s)	604
BstAUI	TGTACA	1 cut(s)	1019
BstC8I	GCNNGC	4 cut(s)	211, 1186, 1246, 1853
BstDSI	CCRYGG	3 cut(s)	63, 653, 1527
BstF5I	GGATG	8 cut(s)	308, 448, 525, 556, 2129, 2247, 2401, 2716
BstHHI	GCGC	2 cut(s)	1578, 1824
BstMAI	GTCTC	2 cut(s)	1191, 1341
BstMWI	GCNNNNNNNGC	6 cut(s)	604, 812, 1023, 1163, 1212, 2744
BstNI	CCWGG	5 cut(s)	56, 88, 582, 1542, 2067
BstNSI	RCATGY	6 cut(s)	413, 1060, 1102, 1188, 1252, 2345
BstSCI	CCNGG	7 cut(s)	54, 86, 234, 580, 1540, 2065, 2280
BstSFI	CTRYAG	4 cut(s)	1192, 1389, 1828, 2753
BstSLI	GKGCMC	3 cut(s)	433, 2333, 2690
BstV1I	GCAGC	5 cut(s)	1025, 1771, 1846, 2600, 2799
BstV2I	GAAGAC	1 cut(s)	1539
BstX2I	RGATCY	5 cut(s)	102, 490, 861, 2095, 2619
BstYI	RGATCY	5 cut(s)	102, 490, 861, 2095, 2619
Bsu36I	CCTNAGG	2 cut(s)	469, 783
BsuI	GTATCC	1 cut(s)	660
BsuRI	GGCC	7 cut(s)	91, 176, 219, 239, 585, 1118, 1855
BtgI	CCRYGG	3 cut(s)	63, 653, 1527
BtgZI	GCGATG	1 cut(s)	962
BtsCI	GGATG	8 cut(s)	308, 448, 525, 556, 2129, 2247, 2401, 2716
BtsIMutI	CAGTG	3 cut(s)	947, 1296, 2850
BveI	ACCTGC	1 cut(s)	2760
Cac8I	GCNNGC	4 cut(s)	211, 1186, 1246, 1853
CaiI	CAGNNNCTG	1 cut(s)	2363
CciI	TCATGA	3 cut(s)	196, 2352, 2812
CfoI	GCGC	2 cut(s)	1578, 1824
Cfr10I	RCCGGY	2 cut(s)	209, 433
Cfr13I	GGNCC	7 cut(s)	19, 90, 174, 238, 328, 726, 2230
CseI	GACGC	1 cut(s)	68
CspAI	ACCGGT	1 cut(s)	433
CspCI	CAANNNNNGTGG	2 cut(s)	1053, 1088
DriI	GACNNNNNGTC	1 cut(s)	2821
EaeI	YGGCCR	2 cut(s)	583, 1853
Eam1104I	CTCTTC	7 cut(s)	9, 143, 231, 1007, 1560, 2065, 2845
Eam1105I	GACNNNNNGTC	1 cut(s)	2821
EarI	CTCTTC	7 cut(s)	9, 143, 231, 1007, 1560, 2065, 2845
EciI	GGCGGA	1 cut(s)	228
Ecl136II	GAGCTC	3 cut(s)	26, 224, 748
Eco130I	CCWWGG	5 cut(s)	63, 93, 1795, 1921, 2194
Eco147I	AGGCCT	1 cut(s)	1118
Eco24I	GRGCYC	4 cut(s)	28, 226, 750, 1379
Eco32I	GATATC	2 cut(s)	76, 2605
Eco47I	GGWCC	4 cut(s)	19, 328, 726, 2230
Eco53kI	GAGCTC	3 cut(s)	26, 224, 748
Eco57I	CTGAAG	1 cut(s)	2385
Eco81I	CCTNAGG	2 cut(s)	469, 783
Eco88I	CYCGRG	1 cut(s)	1676
EcoICRI	GAGCTC	3 cut(s)	26, 224, 748
EcoO109I	RGGNCCY	1 cut(s)	2230
EcoRII	CCWGG	5 cut(s)	54, 86, 580, 1540, 2065
EcoRV	GATATC	2 cut(s)	76, 2605
EcoT14I	CCWWGG	5 cut(s)	63, 93, 1795, 1921, 2194
EcoT22I	ATGCAT	5 cut(s)	895, 978, 1186, 1511, 2765
EcoT38I	GRGCYC	4 cut(s)	28, 226, 750, 1379
ErhI	CCWWGG	5 cut(s)	63, 93, 1795, 1921, 2194
FalI	AAGNNNNNCTT	2 cut(s)	2219, 2251
FaqI	GGGAC	4 cut(s)	336, 1159, 1500, 2091
FauI	CCCGC	4 cut(s)	37, 138, 154, 1856
FbaI	TGATCA	3 cut(s)	403, 661, 2796
FblI	GTMKAC	2 cut(s)	1080, 2522
Fnu4HI	GCNGC	6 cut(s)	1039, 1334, 1785, 1835, 2589, 2788
FokI	GGATG	8 cut(s)	295, 455, 532, 563, 2116, 2234, 2408, 2723
FriOI	GRGCYC	4 cut(s)	28, 226, 750, 1379
Fsp4HI	GCNGC	6 cut(s)	1039, 1334, 1785, 1835, 2589, 2788
FspBI	CTAG	8 cut(s)	416, 1319, 1338, 1742, 2058, 2195, 2376, 2390
GlaI	GCGC	2 cut(s)	1577, 1823
GluI	GCNGC	6 cut(s)	1039, 1334, 1785, 1835, 2589, 2788
GsaI	CCCAGC	4 cut(s)	1161, 1770, 2055, 2088
HaeIII	GGCC	7 cut(s)	91, 176, 219, 239, 585, 1118, 1855
HapII	CCGG	6 cut(s)	210, 236, 263, 434, 2204, 2282
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	2 cut(s)	1578, 1824
Hin1I	GRCGYC	1 cut(s)	60
Hin6I	GCGC	2 cut(s)	1576, 1822
HinP1I	GCGC	2 cut(s)	1576, 1822
HincII	GTYRAC	2 cut(s)	1260, 1879
HindII	GTYRAC	2 cut(s)	1260, 1879
HindIII	AAGCTT	4 cut(s)	820, 1024, 1470, 1901
HpaI	GTTAAC	1 cut(s)	1260
HpaII	CCGG	6 cut(s)	210, 236, 263, 434, 2204, 2282
HphI	GGTGA	3 cut(s)	448, 1940, 2040
Hpy99I	CGWCG	2 cut(s)	83, 155
HpyAV	CCTTC	4 cut(s)	433, 872, 1442, 1925
HpyCH4III	ACNGT	7 cut(s)	1352, 1456, 1599, 1652, 1883, 2313, 2449
HpyCH4IV	ACGT	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	6 cut(s)	604, 812, 1023, 1163, 1212, 2744
HpySE526I	ACGT	1 cut(s)	81
Hsp92I	GRCGYC	1 cut(s)	60
HspAI	GCGC	2 cut(s)	1576, 1822
KpnI	GGTACC	2 cut(s)	388, 2172
KroI	GCCGGC	1 cut(s)	209
KroNI	GCCGGC	1 cut(s)	211
Ksp22I	TGATCA	3 cut(s)	403, 661, 2796
KspAI	GTTAAC	1 cut(s)	1260
LguI	GCTCTTC	3 cut(s)	231, 1007, 2845
LmnI	GCTCC	8 cut(s)	31, 784, 1382, 1531, 1934, 1991, 2282, 2509
Lsp1109I	GCAGC	5 cut(s)	1025, 1771, 1846, 2600, 2799
MaeI	CTAG	8 cut(s)	416, 1319, 1338, 1742, 2058, 2195, 2376, 2390
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	2575
MflI	RGATCY	5 cut(s)	102, 490, 861, 2095, 2619
MhlI	GDGCHC	9 cut(s)	28, 226, 433, 750, 1292, 1379, 2333, 2690, 2852
MlsI	TGGCCA	1 cut(s)	1855
MluNI	TGGCCA	1 cut(s)	1855
MlyI	GAGTC	6 cut(s)	404, 610, 1487, 1780, 1957, 2796
MmeI	TCCRAC	2 cut(s)	30, 2658
Mox20I	TGGCCA	1 cut(s)	1855
Mph1103I	ATGCAT	5 cut(s)	895, 978, 1186, 1511, 2765
MreI	CGCCGGCG	1 cut(s)	209
MroNI	GCCGGC	1 cut(s)	209
MroXI	GAANNNNTTC	2 cut(s)	1326, 2839
MscI	TGGCCA	1 cut(s)	1855
MseI	TTAA	8 cut(s)	357, 896, 1259, 1416, 1601, 1623, 1776, 2672
MslI	CAYNNNNRTG	3 cut(s)	678, 981, 1650
Msp20I	TGGCCA	1 cut(s)	1855
MspA1I	CMGCKG	1 cut(s)	1851
MspCI	CTTAAG	1 cut(s)	1415
MspI	CCGG	6 cut(s)	210, 236, 263, 434, 2204, 2282
MspR9I	CCNGG	7 cut(s)	56, 88, 236, 582, 1542, 2067, 2282
Mva1269I	GAATGC	5 cut(s)	306, 1511, 1642, 2388, 2765
MvaI	CCWGG	5 cut(s)	56, 88, 582, 1542, 2067
MwoI	GCNNNNNNNGC	6 cut(s)	604, 812, 1023, 1163, 1212, 2744
NaeI	GCCGGC	1 cut(s)	211
NciI	CCSGG	2 cut(s)	236, 2282
NcoI	CCATGG	1 cut(s)	63
NgoMIV	GCCGGC	1 cut(s)	209
NmeAIII	GCCGAG	1 cut(s)	245
NsiI	ATGCAT	5 cut(s)	895, 978, 1186, 1511, 2765
NspI	RCATGY	6 cut(s)	413, 1060, 1102, 1188, 1252, 2345
OliI	CACNNNNGTG	1 cut(s)	1650
PaeI	GCATGC	1 cut(s)	1188
PagI	TCATGA	3 cut(s)	196, 2352, 2812
PceI	AGGCCT	1 cut(s)	1118
PciI	ACATGT	2 cut(s)	409, 1098
PciSI	GCTCTTC	3 cut(s)	231, 1007, 2845
PctI	GAATGC	5 cut(s)	306, 1511, 1642, 2388, 2765
PdiI	GCCGGC	1 cut(s)	211
PdmI	GAANNNNTTC	2 cut(s)	1326, 2839
PfeI	GAWTC	7 cut(s)	366, 1411, 1842, 1913, 2045, 2285, 2498
PflMI	CCANNNNNTGG	2 cut(s)	500, 1973
PinAI	ACCGGT	1 cut(s)	433
PkrI	GCNGC	6 cut(s)	1040, 1335, 1786, 1836, 2590, 2789
PleI	GAGTC	6 cut(s)	403, 610, 1487, 1779, 1956, 2796
PpsI	GAGTC	6 cut(s)	403, 610, 1487, 1779, 1956, 2796
PpuMI	RGGWCCY	1 cut(s)	2230
PscI	ACATGT	2 cut(s)	409, 1098
PshBI	ATTAAT	1 cut(s)	1623
Psp124BI	GAGCTC	3 cut(s)	28, 226, 750
Psp5II	RGGWCCY	1 cut(s)	2230
Psp6I	CCWGG	5 cut(s)	54, 86, 580, 1540, 2065
PspFI	CCCAGC	4 cut(s)	1157, 1766, 2051, 2084
PspGI	CCWGG	5 cut(s)	54, 86, 580, 1540, 2065
PspPI	GGNCC	7 cut(s)	19, 90, 174, 238, 328, 726, 2230
PspPPI	RGGWCCY	1 cut(s)	2230
PsrI	GAACNNNNNNTAC	2 cut(s)	2301, 2333
PstI	CTGCAG	2 cut(s)	1196, 2757
PstNI	CAGNNNCTG	1 cut(s)	2363
PsuI	RGATCY	5 cut(s)	102, 490, 861, 2095, 2619
RseI	CAYNNNNRTG	3 cut(s)	678, 981, 1650
SacI	GAGCTC	3 cut(s)	28, 226, 750
SapI	GCTCTTC	3 cut(s)	231, 1007, 2845
SaqAI	TTAA	8 cut(s)	357, 896, 1259, 1416, 1601, 1623, 1776, 2672
SatI	GCNGC	6 cut(s)	1039, 1334, 1785, 1835, 2589, 2788
Sau96I	GGNCC	7 cut(s)	19, 90, 174, 238, 328, 726, 2230
SbfI	CCTGCAGG	1 cut(s)	2757
ScaI	AGTACT	2 cut(s)	632, 2164
SchI	GAGTC	6 cut(s)	404, 610, 1487, 1780, 1957, 2796
ScrFI	CCNGG	7 cut(s)	56, 88, 236, 582, 1542, 2067, 2282
SdaI	CCTGCAGG	1 cut(s)	2757
SduI	GDGCHC	9 cut(s)	28, 226, 433, 750, 1292, 1379, 2333, 2690, 2852
SfcI	CTRYAG	4 cut(s)	1192, 1389, 1828, 2753
SgrAI	CRCCGGYG	2 cut(s)	209, 433
SinI	GGWCC	4 cut(s)	19, 328, 726, 2230
SmiMI	CAYNNNNRTG	3 cut(s)	678, 981, 1650
SmlI	CTYRAG	8 cut(s)	372, 389, 809, 1415, 1495, 2149, 2416, 2720
SmoI	CTYRAG	8 cut(s)	372, 389, 809, 1415, 1495, 2149, 2416, 2720
SphI	GCATGC	1 cut(s)	1188
Sse8387I	CCTGCAGG	1 cut(s)	2757
SseBI	AGGCCT	1 cut(s)	1118
SsiI	CCGC	9 cut(s)	30, 131, 147, 213, 382, 724, 1213, 1334, 1849
SspI	AATATT	1 cut(s)	1760
SspMI	CTAG	8 cut(s)	416, 1319, 1338, 1742, 2058, 2195, 2376, 2390
SstI	GAGCTC	3 cut(s)	28, 226, 750
StuI	AGGCCT	1 cut(s)	1118
StyD4I	CCNGG	7 cut(s)	54, 86, 234, 580, 1540, 2065, 2280
StyI	CCWWGG	5 cut(s)	63, 93, 1795, 1921, 2194
TaaI	ACNGT	7 cut(s)	1352, 1456, 1599, 1652, 1883, 2313, 2449
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	4 cut(s)	78, 398, 1111, 2296
TaqII	GACCGA	1 cut(s)	36
TatI	WGTACW	7 cut(s)	412, 457, 630, 1019, 1234, 2060, 2162
TauI	GCSGC	1 cut(s)	1336
TfiI	GAWTC	7 cut(s)	366, 1411, 1842, 1913, 2045, 2285, 2498
Tru1I	TTAA	8 cut(s)	357, 896, 1259, 1416, 1601, 1623, 1776, 2672
Tru9I	TTAA	8 cut(s)	357, 896, 1259, 1416, 1601, 1623, 1776, 2672
TscAI	CASTG	3 cut(s)	954, 1303, 2857
TseI	GCWGC	5 cut(s)	1038, 1784, 1834, 2588, 2787
TspDTI	ATGAA	8 cut(s)	497, 891, 1022, 1832, 2037, 2178, 2714, 2801
TspGWI	ACGGA	2 cut(s)	1516, 2316
TspRI	CASTG	3 cut(s)	954, 1303, 2857
Van91I	CCANNNNNTGG	2 cut(s)	500, 1973
Vha464I	CTTAAG	1 cut(s)	1415
VneI	GTGCAC	1 cut(s)	2329
VpaK11BI	GGWCC	4 cut(s)	19, 328, 726, 2230
VspI	ATTAAT	1 cut(s)	1623
XapI	RAATTY	3 cut(s)	795, 1322, 2769
XbaI	TCTAGA	3 cut(s)	1318, 1741, 2375
XceI	RCATGY	6 cut(s)	413, 1060, 1102, 1188, 1252, 2345
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1069, 2472
XmaJI	CCTAGG	1 cut(s)	2194
XmiI	GTMKAC	2 cut(s)	1080, 2522
XmnI	GAANNNNTTC	2 cut(s)	1326, 2839
XspI	CTAG	8 cut(s)	416, 1319, 1338, 1742, 2058, 2195, 2376, 2390
ZrmI	AGTACT	2 cut(s)	632, 2164
Zsp2I	ATGCAT	5 cut(s)	895, 978, 1186, 1511, 2765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.