Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000225

Physical Location & Seq

Genomic Coordinates Reverse (-)

16489169 .. 16495081

Gene Structure 5913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G009790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1980 bp

ATGGATCAGTTTGCGGTGAAGGTGGAGGAGGCGAGGCCGGCCGCTGATGGGAGGCCGTCGGCGGGGCCGGTGTATCGGAGCATTTATGCTAAAGATGGGCTGTTGGAGTTGCCGGAGGGGTTCGAGTCACCGTGGCAGTTTCTCAGTGACTCGGTTAAGAGGAACCCAAGCGGTCGAATGCTTGGTCAACGCCAAGTCAACGAGAAGAAGGCGGGTCCATATGTGTGGAGTACATATCAAGAGGTCTATGATGCAGCCATTCGTATGGGTTCGGCCATCAGAAGCCGTGGTGTCAATCCTGGAGATCGTTGTGGTATATATGGATCAAATTGCCCCCAATGGATTATTGCAATGGAGGCCTGTAACAGCCATGCGATTACATATGTTCCACTTTACGACACCCTTGGTGCTAATGCAGTTGAGTTCATCATCAACCATGCTGAAGTTTCAATAGCTTTTGTTCAAGAGAACAAGATCCCTGCTCTTATATTATGCCTTCCGAACTGTTCTACGCATTTAAAAACAATTGTCAGCTTCACGAATGTTTCTAGCACTCAAAAGAAGGAAGCAGAAGAACTGGGGGTATCTTGCTTTTCGTGGGAGGAATTCTCTCAGTTGGGAAATTCAGATTATGAACTACCTCAAAAACAGAGGACTGCTGTTTGCACAATAATGTATACAAGTGGAACGACTGGAGAACCAAAAGGCGTAATCATTTCTAATGCAGCATTAATGTTGGAAGTATTGTCAACAGACCATATACTTTTCCTAACAGATAGAGTGTGTACAGAAGAAGATTCATATTTTTCGTTTCTCCCGTTGGCCCATATATATGACCAAATAATTGAGAGCTATTGCATCTACAAGGGATCTTCAATAGGCTTCTGGCGAGGTGATGTCAGGTTTTTACTGGACGACCTTCAGGAACTAAAGCCTACTACGTTTTGTGGGGTTCCTCGAGTTTATGACCGTATATACACTGGTATTGCTAGTAAAGTTTCATCTGGTGGTGTGCTGAGGAATACCCTTTTCCAGTATGCATATAACTACAAGTTGGCAAATCTGGAGAATGGTTTACCACAAGAAAAAGCGGCACCTCTCTTGGACAAGCTTGTGTTTAACAAGATAAAACAAGCATTAGGAGGACGAGTTCGTATAATGTTGTCTGGTGCTGCACCTTTGCCCAGGCATGTGGAGGAATTTTTGAGGGTCACCAGCTGCAGCACTTTATCCCAAGGATATGGCCTTACTGAAAGCTGTGGTGGCTGTTTTACGTCCATTGGCAATGTTTATCCTATGATTGGGACTGTGGGTGTCCCCTTGACAACTATTGAAGCACGGCTTGAGTCGGTCCCAGAACTGGGATATGATGCACTTTCTAGTGTGCCACGTGGAGAGATTTGCCTAAGAGGAAAAACCTTGTTTTCTGGTTACCACAAGCGAGCAGATCTCACTGAAGAAGTCCTTATTGATGGGTGGTTCCATACAGGTGATATTGGAGAATGGCAGCCTAATGGAGCAATGAAAGTTATAGACAGGAAAAAGAACATATTTAAACTGTCTCAAGGTGAATATGTTGCTGTGGAAAGCATTGAAAGCAAATACTTGCAATGCCCCCTTGTCACATCGATTTGGGTTTATGGGAACAGCTTCGAGTCATTTCTTGTTGCTGTGGTTGTTCCTGACAGAAAGGCCTTGGAGGACTGGGCAGCTGAGCATCATTTGACTGATGACTACAAATCATTGTGTCAAAACATGAAGGCAAGAAAATACATTTTGGATGAGCTCAATAGTATGGGTCAGAAACAGCAACTTCGAGGGTTTGAGTTGTTAAAAGCAGTTCATGTGGAACCAAACCCCTTTGACATAGAGAGGGATCTCATGACCCCAACTTTCAAACTGAAAAGACCGCAATTACTCAAATATTACAAGGATCAAGTTGAAAAACTTTATAGTGAAGCAAAGGGTGGAAAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010143 GO:0010311 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0022622 GO:0030054 GO:0031957 GO:0032501 GO:0032502 GO:0032787 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

659

Amino Acids

73.65

Weight (kDa)

5.99

Isoelectric Point (pI)

40.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	72 - 479	9.2e-78	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49430 AT1G49430
fragaria_vesca	FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica	MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica	Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis	pycom10g06680
rosa_chinensis	RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata	RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora	Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii	Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa	Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha	Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana	Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1093
AccI	GTMKAC	1 cut(s)	677
AciI	CCGC	7 cut(s)	14, 42, 62, 171, 212, 1091, 1910
AclWI	GGATC	6 cut(s)	12, 331, 469, 877, 1884, 1941
AcoI	YGGCCR	2 cut(s)	39, 273
AcsI	RAATTY	3 cut(s)	605, 622, 1199
AcuI	CTGAAG	3 cut(s)	462, 905, 1476
AcvI	CACGTG	1 cut(s)	1391
AfaI	GTAC	2 cut(s)	232, 787
AfiI	CCNNNNNNNGG	5 cut(s)	48, 62, 1301, 1360, 1361
AgsI	TTSAA	7 cut(s)	450, 464, 876, 1334, 1595, 1897, 1943
AjnI	CCWGG	2 cut(s)	298, 1184
AloI	GAACNNNNNNTCC	2 cut(s)	1134, 1166
AluBI	AGCT	9 cut(s)	455, 534, 852, 1111, 1218, 1257, 1650, 1712, 1786
AluI	AGCT	9 cut(s)	455, 534, 852, 1111, 1218, 1257, 1650, 1712, 1786
Alw21I	GWGCWC	1 cut(s)	1788
Alw26I	GTCTC	1 cut(s)	1566
AlwI	GGATC	6 cut(s)	12, 331, 469, 877, 1884, 1941
Ama87I	CYCGRG	1 cut(s)	957
AoxI	GGCC	9 cut(s)	35, 39, 53, 65, 273, 357, 822, 1243, 1692
ApeKI	GCWGC	7 cut(s)	254, 725, 1172, 1218, 1221, 1507, 1709
ApoI	RAATTY	3 cut(s)	605, 622, 1199
ArsI	GACNNNNNNTTYG	2 cut(s)	169, 201
AseI	ATTAAT	1 cut(s)	731
Asp700I	GAANNNNTTC	1 cut(s)	1649
AspS9I	GGNCC	4 cut(s)	65, 215, 823, 1351
AsuHPI	GGTGA	6 cut(s)	28, 120, 905, 1204, 1502, 1580
AvaI	CYCGRG	1 cut(s)	957
AvaII	GGWCC	2 cut(s)	215, 1351
BanI	GGYRCC	1 cut(s)	1093
BanII	GRGCYC	1 cut(s)	1788
BbrPI	CACGTG	1 cut(s)	1391
Bbv12I	GWGCWC	1 cut(s)	1788
BbvCI	CCTCAGC	1 cut(s)	1016
BbvI	GCAGC	7 cut(s)	266, 737, 1159, 1205, 1233, 1519, 1721
BccI	CCATC	4 cut(s)	41, 89, 284, 1466
BceAI	ACGGC	3 cut(s)	40, 270, 1355
BciT130I	CCWGG	2 cut(s)	300, 1186
BcoDI	GTCTC	1 cut(s)	1566
BfaI	CTAG	3 cut(s)	549, 990, 1380
BfmI	CTRYAG	1 cut(s)	1219
BglII	AGATCT	1 cut(s)	1447
BisI	GCNGC	9 cut(s)	42, 255, 726, 1092, 1173, 1219, 1222, 1508, 1710
BlpI	GCTNAGC	1 cut(s)	1713
BlsI	GCNGC	9 cut(s)	43, 256, 727, 1093, 1174, 1220, 1223, 1509, 1711
Bme1390I	CCNGG	2 cut(s)	300, 1186
Bme18I	GGWCC	2 cut(s)	215, 1351
BmeT110I	CYCGRG	1 cut(s)	957
BmgT120I	GGNCC	4 cut(s)	65, 215, 823, 1351
BmiI	GGNNCC	8 cut(s)	66, 164, 216, 954, 1095, 1353, 1481, 1851
BmrFI	CCNGG	2 cut(s)	300, 1186
BmrI	ACTGGG	3 cut(s)	587, 1370, 1714
BmsI	GCATC	4 cut(s)	241, 867, 1360, 1726
BmuI	ACTGGG	3 cut(s)	587, 1370, 1714
BplI	GAGNNNNNCTC	4 cut(s)	593, 625, 1434, 1466
BpmI	CTGGAG	3 cut(s)	321, 714, 1085
Bpu10I	CCTNAGC	1 cut(s)	1016
Bpu1102I	GCTNAGC	1 cut(s)	1713
BpuEI	CTTGAG	2 cut(s)	1364, 1548
Bsa29I	ATCGAT	1 cut(s)	1628
BsaAI	YACGTR	1 cut(s)	1391
BsaJI	CCNNGG	6 cut(s)	131, 286, 403, 1184, 1234, 1695
BsaXI	ACNNNNNCTCC	2 cut(s)	1134, 1164
Bsc4I	CCNNNNNNNGG	5 cut(s)	48, 62, 1301, 1360, 1361
Bse118I	RCCGGY	2 cut(s)	37, 67
Bse1I	ACTGG	7 cut(s)	582, 697, 915, 985, 1033, 1365, 1709
Bse3DI	GCAATG	4 cut(s)	357, 1291, 1527, 1616
BseBI	CCWGG	2 cut(s)	300, 1186
BseCI	ATCGAT	1 cut(s)	1628
BseDI	CCNNGG	6 cut(s)	131, 286, 403, 1184, 1234, 1695
BseGI	GGATG	1 cut(s)	1786
BseLI	CCNNNNNNNGG	5 cut(s)	48, 62, 1301, 1360, 1361
BseMI	GCAATG	4 cut(s)	357, 1291, 1527, 1616
BseMII	CTCAG	4 cut(s)	157, 626, 1007, 1704
BseNI	ACTGG	7 cut(s)	582, 697, 915, 985, 1033, 1365, 1709
BseRI	GAGGAG	1 cut(s)	41
BseX3I	CGGCCG	1 cut(s)	39
BseXI	GCAGC	7 cut(s)	266, 737, 1159, 1205, 1233, 1519, 1721
BsgI	GTGCAG	1 cut(s)	1158
Bsh1285I	CGRYCG	2 cut(s)	42, 175
BshFI	GGCC	9 cut(s)	37, 41, 55, 67, 275, 359, 824, 1245, 1694
BshNI	GGYRCC	1 cut(s)	1093
BshVI	ATCGAT	1 cut(s)	1628
BsiEI	CGRYCG	2 cut(s)	42, 175
BsiHKAI	GWGCWC	1 cut(s)	1788
BsiHKCI	CYCGRG	1 cut(s)	957
BsiSI	CCGG	3 cut(s)	38, 68, 113
BslFI	GGGAC	3 cut(s)	1301, 1318, 1337
BslI	CCNNNNNNNGG	5 cut(s)	48, 62, 1301, 1360, 1361
BsmAI	GTCTC	1 cut(s)	1566
BsmFI	GGGAC	3 cut(s)	1301, 1318, 1337
BsmI	GAATGC	1 cut(s)	183
BsnI	GGCC	9 cut(s)	37, 41, 55, 67, 275, 359, 824, 1245, 1694
BsoBI	CYCGRG	1 cut(s)	957
Bsp1286I	GDGCHC	1 cut(s)	1788
Bsp1407I	TGTACA	1 cut(s)	785
Bsp143I	GATC	8 cut(s)	4, 304, 323, 474, 869, 1447, 1876, 1933
Bsp1720I	GCTNAGC	1 cut(s)	1713
BspACI	CCGC	7 cut(s)	14, 42, 62, 171, 212, 1091, 1910
BspANI	GGCC	9 cut(s)	37, 41, 55, 67, 275, 359, 824, 1245, 1694
BspCNI	CTCAG	4 cut(s)	156, 625, 1008, 1705
BspDI	ATCGAT	1 cut(s)	1628
BspHI	TCATGA	1 cut(s)	1881
BspLI	GGNNCC	8 cut(s)	66, 164, 216, 954, 1095, 1353, 1481, 1851
BspMAI	CTGCAG	1 cut(s)	1223
BspPI	GGATC	6 cut(s)	12, 331, 469, 877, 1884, 1941
BspT107I	GGYRCC	1 cut(s)	1093
BsrDI	GCAATG	4 cut(s)	357, 1291, 1527, 1616
BsrFI	RCCGGY	2 cut(s)	37, 67
BsrGI	TGTACA	1 cut(s)	785
BsrI	ACTGG	7 cut(s)	582, 697, 915, 985, 1033, 1365, 1709
BssAI	RCCGGY	2 cut(s)	37, 67
BssECI	CCNNGG	6 cut(s)	131, 286, 403, 1184, 1234, 1695
BssMI	GATC	8 cut(s)	4, 304, 323, 474, 869, 1447, 1876, 1933
BssNAI	GTATAC	1 cut(s)	678
BssT1I	CCWWGG	3 cut(s)	403, 1234, 1695
Bst1107I	GTATAC	1 cut(s)	678
Bst2UI	CCWGG	2 cut(s)	300, 1186
Bst4CI	ACNGT	5 cut(s)	132, 506, 971, 1309, 1560
BstAUI	TGTACA	1 cut(s)	785
BstBAI	YACGTR	1 cut(s)	1391
BstC8I	GCNNGC	2 cut(s)	39, 1443
BstDEI	CTNAG	5 cut(s)	143, 612, 1016, 1406, 1713
BstDSI	CCRYGG	2 cut(s)	131, 286
BstEII	GGTNACC	2 cut(s)	1210, 1430
BstF5I	GGATG	1 cut(s)	1786
BstKTI	GATC	8 cut(s)	7, 307, 326, 477, 872, 1450, 1879, 1936
BstMAI	GTCTC	1 cut(s)	1566
BstMBI	GATC	8 cut(s)	4, 304, 323, 474, 869, 1447, 1876, 1933
BstMCI	CGRYCG	2 cut(s)	42, 175
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 356, 1263, 1596
BstNI	CCWGG	2 cut(s)	300, 1186
BstNSI	RCATGY	1 cut(s)	1193
BstPI	GGTNACC	2 cut(s)	1210, 1430
BstSCI	CCNGG	2 cut(s)	298, 1184
BstSFI	CTRYAG	1 cut(s)	1219
BstV1I	GCAGC	7 cut(s)	266, 737, 1159, 1205, 1233, 1519, 1721
BstX2I	RGATCY	4 cut(s)	474, 869, 1447, 1876
BstXI	CCANNNNNNTGG	4 cut(s)	225, 265, 1192, 1241
BstYI	RGATCY	4 cut(s)	474, 869, 1447, 1876
BstZ17I	GTATAC	1 cut(s)	678
BstZI	CGGCCG	1 cut(s)	39
Bsu15I	ATCGAT	1 cut(s)	1628
BsuRI	GGCC	9 cut(s)	37, 41, 55, 67, 275, 359, 824, 1245, 1694
BsuTUI	ATCGAT	1 cut(s)	1628
BtgI	CCRYGG	2 cut(s)	131, 286
BtsCI	GGATG	1 cut(s)	1786
BtsIMutI	CAGTG	3 cut(s)	151, 978, 1452
Cac8I	GCNNGC	2 cut(s)	39, 1443
CciI	TCATGA	1 cut(s)	1881
Cfr10I	RCCGGY	2 cut(s)	37, 67
Cfr13I	GGNCC	4 cut(s)	65, 215, 823, 1351
ClaI	ATCGAT	1 cut(s)	1628
Csp6I	GTAC	2 cut(s)	231, 786
CviAII	CATG	6 cut(s)	371, 437, 1190, 1756, 1844, 1882
CviQI	GTAC	2 cut(s)	231, 786
DdeI	CTNAG	5 cut(s)	143, 612, 1016, 1406, 1713
DpnI	GATC	8 cut(s)	6, 306, 325, 476, 871, 1449, 1878, 1935
DpnII	GATC	8 cut(s)	4, 304, 323, 474, 869, 1447, 1876, 1933
DraI	TTTAAA	2 cut(s)	519, 1555
EaeI	YGGCCR	2 cut(s)	39, 273
EagI	CGGCCG	1 cut(s)	39
Ecl136II	GAGCTC	1 cut(s)	1786
EclXI	CGGCCG	1 cut(s)	39
Eco130I	CCWWGG	3 cut(s)	403, 1234, 1695
Eco147I	AGGCCT	2 cut(s)	359, 1694
Eco24I	GRGCYC	1 cut(s)	1788
Eco47I	GGWCC	2 cut(s)	215, 1351
Eco52I	CGGCCG	1 cut(s)	39
Eco53kI	GAGCTC	1 cut(s)	1786
Eco57I	CTGAAG	3 cut(s)	462, 905, 1476
Eco72I	CACGTG	1 cut(s)	1391
Eco88I	CYCGRG	1 cut(s)	957
Eco91I	GGTNACC	2 cut(s)	1210, 1430
EcoICRI	GAGCTC	1 cut(s)	1786
EcoO65I	GGTNACC	2 cut(s)	1210, 1430
EcoRI	GAATTC	1 cut(s)	605
EcoRII	CCWGG	2 cut(s)	298, 1184
EcoT14I	CCWWGG	3 cut(s)	403, 1234, 1695
EcoT22I	ATGCAT	1 cut(s)	1042
EcoT38I	GRGCYC	1 cut(s)	1788
ErhI	CCWWGG	3 cut(s)	403, 1234, 1695
FaeI	CATG	6 cut(s)	374, 440, 1193, 1759, 1847, 1885
FalI	AAGNNNNNCTT	4 cut(s)	1326, 1358, 1449, 1481
FaqI	GGGAC	3 cut(s)	1301, 1318, 1337
FatI	CATG	6 cut(s)	370, 436, 1189, 1755, 1843, 1881
FauI	CCCGC	2 cut(s)	55, 205
FauNDI	CATATG	2 cut(s)	220, 382
FblI	GTMKAC	1 cut(s)	677
Fnu4HI	GCNGC	9 cut(s)	42, 255, 726, 1092, 1173, 1219, 1222, 1508, 1710
FokI	GGATG	1 cut(s)	1793
FriOI	GRGCYC	1 cut(s)	1788
FseI	GGCCGGCC	1 cut(s)	41
Fsp4HI	GCNGC	9 cut(s)	42, 255, 726, 1092, 1173, 1219, 1222, 1508, 1710
FspBI	CTAG	3 cut(s)	549, 990, 1380
GluI	GCNGC	9 cut(s)	42, 255, 726, 1092, 1173, 1219, 1222, 1508, 1710
GsuI	CTGGAG	3 cut(s)	321, 714, 1085
HaeIII	GGCC	9 cut(s)	37, 41, 55, 67, 275, 359, 824, 1245, 1694
HapII	CCGG	3 cut(s)	38, 68, 113
Hin1II	CATG	6 cut(s)	374, 440, 1193, 1759, 1847, 1885
HincII	GTYRAC	3 cut(s)	188, 199, 750
HindII	GTYRAC	3 cut(s)	188, 199, 750
HindIII	AAGCTT	1 cut(s)	1109
HinfI	GANTC	5 cut(s)	125, 149, 797, 1346, 1655
HpaII	CCGG	3 cut(s)	38, 68, 113
HphI	GGTGA	6 cut(s)	28, 120, 905, 1204, 1502, 1580
Hpy166II	GTNNAC	6 cut(s)	188, 199, 678, 750, 786, 1076
Hpy188I	TCNGA	5 cut(s)	78, 281, 501, 628, 1803
Hpy188III	TCNNGA	7 cut(s)	239, 464, 538, 923, 1064, 1682, 1882
Hpy8I	GTNNAC	6 cut(s)	188, 199, 678, 750, 786, 1076
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	6 cut(s)	13, 202, 506, 556, 929, 1753
HpyCH4III	ACNGT	5 cut(s)	132, 506, 971, 1309, 1560
HpyCH4IV	ACGT	3 cut(s)	941, 1274, 1390
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 356, 1263, 1596
HpyF3I	CTNAG	5 cut(s)	143, 612, 1016, 1406, 1713
HpySE526I	ACGT	3 cut(s)	941, 1274, 1390
Hsp92II	CATG	6 cut(s)	374, 440, 1193, 1759, 1847, 1885
KroI	GCCGGC	1 cut(s)	37
KroNI	GCCGGC	1 cut(s)	39
Kzo9I	GATC	8 cut(s)	4, 304, 323, 474, 869, 1447, 1876, 1933
LmnI	GCTCC	2 cut(s)	78, 1517
Lsp1109I	GCAGC	7 cut(s)	266, 737, 1159, 1205, 1233, 1519, 1721
LweI	GCATC	4 cut(s)	241, 867, 1360, 1726
MaeI	CTAG	3 cut(s)	549, 990, 1380
MaeII	ACGT	3 cut(s)	941, 1274, 1390
MaeIII	GTNAC	6 cut(s)	126, 146, 362, 1210, 1430, 1621
MalI	GATC	8 cut(s)	6, 306, 325, 476, 871, 1449, 1878, 1935
MboI	GATC	8 cut(s)	4, 304, 323, 474, 869, 1447, 1876, 1933
MboII	GAAGA	6 cut(s)	217, 584, 803, 806, 864, 1469
MfeI	CAATTG	1 cut(s)	525
MflI	RGATCY	4 cut(s)	474, 869, 1447, 1876
MhlI	GDGCHC	1 cut(s)	1788
MluCI	AATT	7 cut(s)	328, 525, 605, 622, 843, 1199, 1913
MlyI	GAGTC	4 cut(s)	134, 143, 1355, 1664
MmeI	TCCRAC	2 cut(s)	84, 717
Mph1103I	ATGCAT	1 cut(s)	1042
MroNI	GCCGGC	1 cut(s)	37
MroXI	GAANNNNTTC	1 cut(s)	1649
MseI	TTAA	6 cut(s)	156, 518, 731, 1119, 1554, 1832
MslI	CAYNNNNRTG	5 cut(s)	223, 263, 671, 831, 1488
MspA1I	CMGCKG	3 cut(s)	44, 1218, 1712
MspI	CCGG	3 cut(s)	38, 68, 113
MspR9I	CCNGG	2 cut(s)	300, 1186
MunI	CAATTG	1 cut(s)	525
Mva1269I	GAATGC	1 cut(s)	183
MvaI	CCWGG	2 cut(s)	300, 1186
MwoI	GCNNNNNNNGC	4 cut(s)	38, 356, 1263, 1596
NaeI	GCCGGC	1 cut(s)	39
NdeI	CATATG	2 cut(s)	220, 382
NdeII	GATC	8 cut(s)	4, 304, 323, 474, 869, 1447, 1876, 1933
NgoMIV	GCCGGC	1 cut(s)	37
NlaIII	CATG	6 cut(s)	374, 440, 1193, 1759, 1847, 1885
NlaIV	GGNNCC	8 cut(s)	66, 164, 216, 954, 1095, 1353, 1481, 1851
NmuCI	GTSAC	4 cut(s)	126, 146, 1210, 1621
NsiI	ATGCAT	1 cut(s)	1042
NspI	RCATGY	1 cut(s)	1193
PaeR7I	CTCGAG	1 cut(s)	957
PagI	TCATGA	1 cut(s)	1881
PceI	AGGCCT	2 cut(s)	359, 1694
PcsI	WCGNNNNNNNCGW	1 cut(s)	815
PctI	GAATGC	1 cut(s)	183
PdiI	GCCGGC	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	1649
PfeI	GAWTC	1 cut(s)	797
PfoI	TCCNGGA	1 cut(s)	298
PkrI	GCNGC	9 cut(s)	43, 256, 727, 1093, 1174, 1220, 1223, 1509, 1711
PleI	GAGTC	4 cut(s)	133, 143, 1354, 1663
PmaCI	CACGTG	1 cut(s)	1391
PmlI	CACGTG	1 cut(s)	1391
PpsI	GAGTC	4 cut(s)	133, 143, 1354, 1663
Ppu21I	YACGTR	1 cut(s)	1391
PshBI	ATTAAT	1 cut(s)	731
Psp124BI	GAGCTC	1 cut(s)	1788
Psp6I	CCWGG	2 cut(s)	298, 1184
PspCI	CACGTG	1 cut(s)	1391
PspEI	GGTNACC	2 cut(s)	1210, 1430
PspGI	CCWGG	2 cut(s)	298, 1184
PspN4I	GGNNCC	8 cut(s)	66, 164, 216, 954, 1095, 1353, 1481, 1851
PspPI	GGNCC	4 cut(s)	65, 215, 823, 1351
PspXI	VCTCGAGB	1 cut(s)	957
PstI	CTGCAG	1 cut(s)	1223
PsuI	RGATCY	4 cut(s)	474, 869, 1447, 1876
PvuII	CAGCTG	2 cut(s)	1218, 1712
RigI	GGCCGGCC	1 cut(s)	41
RsaI	GTAC	2 cut(s)	232, 787
RsaNI	GTAC	2 cut(s)	231, 786
RseI	CAYNNNNRTG	5 cut(s)	223, 263, 671, 831, 1488
SacI	GAGCTC	1 cut(s)	1788
SaqAI	TTAA	6 cut(s)	156, 518, 731, 1119, 1554, 1832
SatI	GCNGC	9 cut(s)	42, 255, 726, 1092, 1173, 1219, 1222, 1508, 1710
Sau3AI	GATC	8 cut(s)	4, 304, 323, 474, 869, 1447, 1876, 1933
Sau96I	GGNCC	4 cut(s)	65, 215, 823, 1351
SchI	GAGTC	4 cut(s)	134, 143, 1355, 1664
ScrFI	CCNGG	2 cut(s)	300, 1186
SduI	GDGCHC	1 cut(s)	1788
SfaNI	GCATC	4 cut(s)	241, 867, 1360, 1726
SfcI	CTRYAG	1 cut(s)	1219
Sfr274I	CTCGAG	1 cut(s)	957
SinI	GGWCC	2 cut(s)	215, 1351
SlaI	CTCGAG	1 cut(s)	957
SmiMI	CAYNNNNRTG	5 cut(s)	223, 263, 671, 831, 1488
SmlI	CTYRAG	3 cut(s)	957, 1343, 1563
SmoI	CTYRAG	3 cut(s)	957, 1343, 1563
Sse9I	AATT	7 cut(s)	328, 525, 605, 622, 843, 1199, 1913
SseBI	AGGCCT	2 cut(s)	359, 1694
SsiI	CCGC	7 cut(s)	14, 42, 62, 171, 212, 1091, 1910
SspI	AATATT	1 cut(s)	1925
SspMI	CTAG	3 cut(s)	549, 990, 1380
SstI	GAGCTC	1 cut(s)	1788
StuI	AGGCCT	2 cut(s)	359, 1694
StyD4I	CCNGG	2 cut(s)	298, 1184
StyI	CCWWGG	3 cut(s)	403, 1234, 1695
TaaI	ACNGT	5 cut(s)	132, 506, 971, 1309, 1560
TaiI	ACGT	3 cut(s)	944, 1277, 1393
TaqI	TCGA	6 cut(s)	123, 175, 958, 1628, 1653, 1816
TaqII	GACCGA	1 cut(s)	1339
TasI	AATT	7 cut(s)	328, 525, 605, 622, 843, 1199, 1913
TatI	WGTACW	2 cut(s)	230, 785
TauI	GCSGC	2 cut(s)	44, 1094
TfiI	GAWTC	1 cut(s)	797
Tru1I	TTAA	6 cut(s)	156, 518, 731, 1119, 1554, 1832
Tru9I	TTAA	6 cut(s)	156, 518, 731, 1119, 1554, 1832
TscAI	CASTG	3 cut(s)	151, 985, 1459
TseFI	GTSAC	4 cut(s)	126, 146, 1210, 1621
TseI	GCWGC	7 cut(s)	254, 725, 1172, 1218, 1221, 1507, 1709
Tsp45I	GTSAC	4 cut(s)	126, 146, 1210, 1621
TspDTI	ATGAA	7 cut(s)	415, 648, 789, 990, 1538, 1772, 1832
TspRI	CASTG	3 cut(s)	151, 985, 1459
VpaK11BI	GGWCC	2 cut(s)	215, 1351
VspI	ATTAAT	1 cut(s)	731
XapI	RAATTY	3 cut(s)	605, 622, 1199
XceI	RCATGY	1 cut(s)	1193
XhoI	CTCGAG	1 cut(s)	957
XmiI	GTMKAC	1 cut(s)	677
XmnI	GAANNNNTTC	1 cut(s)	1649
XspI	CTAG	3 cut(s)	549, 990, 1380
Zsp2I	ATGCAT	1 cut(s)	1042

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.