Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000225

Physical Location & Seq

Genomic Coordinates Reverse (-)

12093913 .. 12095169

Gene Structure 1257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG105700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGAAACGAAGAGAACTAGAGTTCATCAGTTTGTTAAATATTGTAGGCCTTACTGAAAGCTGTGGTGGCTGTTTTTCGTCCATTGGCAATGTTTATCCTATGGTTGGGACTGTGGGTGTCCCCTTGACAACTATTGAAGCACGGCTTGAGTCGGTCCCAGAACTGGGATATGATGCACTTTCTAGTGTGCCACGTGGAGAGATTTGCCTAAGAGGAAAAACCTTGTTTTCTGGTTACCACAAGCGAGCAGATCTTACTGAAGAAGTCCTTATTGATGGGTGGTTCCATACAGGTGATATTGGAGAATGGCAGCCTAATGGAGCAATGAAAGTTATAGACAGGAAAAAGAACATATTTAAACTGTCTCAAGGTGAATATGTTGCTGTGGAAAGCATTGAGAGCAAATACTTGCAATGCCCTCTTGTCACATCGATTTGGGTTTATGGGAACAGCTTCGAGTCATTTCTTGTTGCTGTGGTTGTTCCTGACAGAAAGGCCTTGGAGGACTGGGCAGCTGAGCATCATTTGACTGATGACTACAAATCATTGTGTCAAAACATGAAGACAAGAAAATACATTTTGGATGAGCTCACTAGTATGGGTCAGAAACAGCAACTTCGAGGGTTTGAGTTGTTAAAAGCAGTTCATTTGGAACCAAACCCCTTTGACATAGAGAGGGATCTCATGACTCCAACTTTCAAACTGAAACGACCGCAATTACTCAAATATTACAAGGACCAAGTTGAAAAACTTTATAGTGAAGCAAAGGGTGGAAAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010143 GO:0010311 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0022622 GO:0030054 GO:0031957 GO:0032501 GO:0032502 GO:0032787 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

260

Amino Acids

29.51

Weight (kDa)

6.25

Isoelectric Point (pI)

39.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	10 - 80	1.5e-07	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49430 AT1G49430
fragaria_vesca	FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica	MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica	Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis	pycom10g06680
rosa_chinensis	RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata	RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora	Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii	Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa	Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha	Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana	Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	713
AclWI	GGATC	1 cut(s)	687
AcuI	CTGAAG	1 cut(s)	279
AcvI	CACGTG	1 cut(s)	194
AfiI	CCNNNNNNNGG	3 cut(s)	104, 163, 164
AgsI	TTSAA	3 cut(s)	137, 700, 746
AhlI	ACTAGT	1 cut(s)	593
AluBI	AGCT	4 cut(s)	60, 453, 515, 589
AluI	AGCT	4 cut(s)	60, 453, 515, 589
Alw21I	GWGCWC	1 cut(s)	591
Alw26I	GTCTC	1 cut(s)	369
AlwI	GGATC	1 cut(s)	687
AoxI	GGCC	2 cut(s)	46, 495
ApeKI	GCWGC	2 cut(s)	310, 512
Asp700I	GAANNNNTTC	1 cut(s)	452
AspS9I	GGNCC	2 cut(s)	154, 736
AsuHPI	GGTGA	2 cut(s)	305, 383
AvaII	GGWCC	2 cut(s)	154, 736
BanII	GRGCYC	1 cut(s)	591
BbrPI	CACGTG	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	569
Bbv12I	GWGCWC	1 cut(s)	591
BbvI	GCAGC	2 cut(s)	322, 524
BccI	CCATC	1 cut(s)	269
BceAI	ACGGC	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	369
BcuI	ACTAGT	1 cut(s)	593
BfaI	CTAG	3 cut(s)	17, 183, 594
BglII	AGATCT	1 cut(s)	250
BisI	GCNGC	2 cut(s)	311, 513
BlpI	GCTNAGC	1 cut(s)	516
BlsI	GCNGC	2 cut(s)	312, 514
Bme18I	GGWCC	2 cut(s)	154, 736
BmgT120I	GGNCC	2 cut(s)	154, 736
BmiI	GGNNCC	3 cut(s)	156, 284, 654
BmrI	ACTGGG	2 cut(s)	173, 517
BmsI	GCATC	2 cut(s)	163, 529
BmuI	ACTGGG	2 cut(s)	173, 517
BpiI	GAAGAC	1 cut(s)	569
Bpu1102I	GCTNAGC	1 cut(s)	516
BpuEI	CTTGAG	2 cut(s)	167, 351
Bsa29I	ATCGAT	1 cut(s)	431
BsaAI	YACGTR	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	498
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 163, 164
Bse1I	ACTGG	2 cut(s)	168, 512
Bse3DI	GCAATG	3 cut(s)	94, 330, 419
BseCI	ATCGAT	1 cut(s)	431
BseDI	CCNNGG	1 cut(s)	498
BseGI	GGATG	1 cut(s)	589
BseLI	CCNNNNNNNGG	3 cut(s)	104, 163, 164
BseMI	GCAATG	3 cut(s)	94, 330, 419
BseMII	CTCAG	1 cut(s)	507
BseNI	ACTGG	2 cut(s)	168, 512
BseXI	GCAGC	2 cut(s)	322, 524
Bsh1285I	CGRYCG	1 cut(s)	713
BshFI	GGCC	2 cut(s)	48, 497
BshVI	ATCGAT	1 cut(s)	431
BsiEI	CGRYCG	1 cut(s)	713
BsiHKAI	GWGCWC	1 cut(s)	591
BslFI	GGGAC	3 cut(s)	104, 121, 140
BslI	CCNNNNNNNGG	3 cut(s)	104, 163, 164
BsmAI	GTCTC	1 cut(s)	369
BsmFI	GGGAC	3 cut(s)	104, 121, 140
BsnI	GGCC	2 cut(s)	48, 497
Bsp1286I	GDGCHC	1 cut(s)	591
Bsp143I	GATC	2 cut(s)	250, 679
Bsp1720I	GCTNAGC	1 cut(s)	516
BspACI	CCGC	1 cut(s)	713
BspANI	GGCC	2 cut(s)	48, 497
BspCNI	CTCAG	1 cut(s)	508
BspDI	ATCGAT	1 cut(s)	431
BspHI	TCATGA	1 cut(s)	684
BspLI	GGNNCC	3 cut(s)	156, 284, 654
BspPI	GGATC	1 cut(s)	687
BsrDI	GCAATG	3 cut(s)	94, 330, 419
BsrI	ACTGG	2 cut(s)	168, 512
BssECI	CCNNGG	1 cut(s)	498
BssMI	GATC	2 cut(s)	250, 679
BssT1I	CCWWGG	1 cut(s)	498
Bst4CI	ACNGT	2 cut(s)	112, 363
Bst6I	CTCTTC	1 cut(s)	4
BstBAI	YACGTR	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	2 cut(s)	209, 516
BstEII	GGTNACC	1 cut(s)	233
BstF5I	GGATG	1 cut(s)	589
BstKTI	GATC	2 cut(s)	253, 682
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	2 cut(s)	250, 679
BstMCI	CGRYCG	1 cut(s)	713
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 399
BstPI	GGTNACC	1 cut(s)	233
BstV1I	GCAGC	2 cut(s)	322, 524
BstV2I	GAAGAC	1 cut(s)	569
BstX2I	RGATCY	2 cut(s)	250, 679
BstYI	RGATCY	2 cut(s)	250, 679
Bsu15I	ATCGAT	1 cut(s)	431
BsuRI	GGCC	2 cut(s)	48, 497
BsuTUI	ATCGAT	1 cut(s)	431
BtsCI	GGATG	1 cut(s)	589
Cac8I	GCNNGC	1 cut(s)	246
CciI	TCATGA	1 cut(s)	684
Cfr13I	GGNCC	2 cut(s)	154, 736
ClaI	ATCGAT	1 cut(s)	431
CviAII	CATG	2 cut(s)	559, 685
CviJI	RGCY	9 cut(s)	48, 60, 69, 145, 313, 453, 497, 515, 589
CviKI_1	RGCY	9 cut(s)	48, 60, 69, 145, 313, 453, 497, 515, 589
DdeI	CTNAG	2 cut(s)	209, 516
DpnI	GATC	2 cut(s)	252, 681
DpnII	GATC	2 cut(s)	250, 679
DraI	TTTAAA	1 cut(s)	358
Eam1104I	CTCTTC	1 cut(s)	4
EarI	CTCTTC	1 cut(s)	4
Ecl136II	GAGCTC	1 cut(s)	589
Eco130I	CCWWGG	1 cut(s)	498
Eco147I	AGGCCT	2 cut(s)	48, 497
Eco24I	GRGCYC	1 cut(s)	591
Eco47I	GGWCC	2 cut(s)	154, 736
Eco53kI	GAGCTC	1 cut(s)	589
Eco57I	CTGAAG	1 cut(s)	279
Eco72I	CACGTG	1 cut(s)	194
Eco91I	GGTNACC	1 cut(s)	233
EcoICRI	GAGCTC	1 cut(s)	589
EcoO65I	GGTNACC	1 cut(s)	233
EcoT14I	CCWWGG	1 cut(s)	498
EcoT38I	GRGCYC	1 cut(s)	591
ErhI	CCWWGG	1 cut(s)	498
FaeI	CATG	2 cut(s)	562, 688
FalI	AAGNNNNNCTT	4 cut(s)	129, 161, 252, 284
FaqI	GGGAC	3 cut(s)	104, 121, 140
FatI	CATG	2 cut(s)	558, 684
Fnu4HI	GCNGC	2 cut(s)	311, 513
FokI	GGATG	1 cut(s)	596
FriOI	GRGCYC	1 cut(s)	591
Fsp4HI	GCNGC	2 cut(s)	311, 513
FspBI	CTAG	3 cut(s)	17, 183, 594
GluI	GCNGC	2 cut(s)	311, 513
HaeIII	GGCC	2 cut(s)	48, 497
Hin1II	CATG	2 cut(s)	562, 688
HinfI	GANTC	3 cut(s)	149, 458, 688
HphI	GGTGA	2 cut(s)	305, 383
Hpy188I	TCNGA	1 cut(s)	606
Hpy188III	TCNNGA	2 cut(s)	485, 685
HpyCH4III	ACNGT	2 cut(s)	112, 363
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	2 cut(s)	176, 412
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 399
HpyF3I	CTNAG	2 cut(s)	209, 516
HpySE526I	ACGT	1 cut(s)	193
Hsp92II	CATG	2 cut(s)	562, 688
Kzo9I	GATC	2 cut(s)	250, 679
LmnI	GCTCC	1 cut(s)	320
LpnPI	CCDG	7 cut(s)	149, 171, 216, 276, 325, 493, 498
Lsp1109I	GCAGC	2 cut(s)	322, 524
LweI	GCATC	2 cut(s)	163, 529
MaeI	CTAG	3 cut(s)	17, 183, 594
MaeII	ACGT	1 cut(s)	193
MaeIII	GTNAC	2 cut(s)	233, 424
MalI	GATC	2 cut(s)	252, 681
MboI	GATC	2 cut(s)	250, 679
MboII	GAAGA	3 cut(s)	21, 272, 574
MflI	RGATCY	2 cut(s)	250, 679
MhlI	GDGCHC	1 cut(s)	591
MluCI	AATT	1 cut(s)	716
MlyI	GAGTC	3 cut(s)	158, 467, 682
MmeI	TCCRAC	1 cut(s)	716
MnlI	CCTC	5 cut(s)	206, 429, 496, 614, 669
MroXI	GAANNNNTTC	1 cut(s)	452
MseI	TTAA	3 cut(s)	35, 357, 635
MslI	CAYNNNNRTG	2 cut(s)	291, 596
MspA1I	CMGCKG	1 cut(s)	515
MwoI	GCNNNNNNNGC	2 cut(s)	66, 399
NdeII	GATC	2 cut(s)	250, 679
NlaIII	CATG	2 cut(s)	562, 688
NlaIV	GGNNCC	3 cut(s)	156, 284, 654
NmuCI	GTSAC	1 cut(s)	424
PagI	TCATGA	1 cut(s)	684
PceI	AGGCCT	2 cut(s)	48, 497
PdmI	GAANNNNTTC	1 cut(s)	452
PkrI	GCNGC	2 cut(s)	312, 514
PleI	GAGTC	3 cut(s)	157, 466, 682
PmaCI	CACGTG	1 cut(s)	194
PmlI	CACGTG	1 cut(s)	194
PpsI	GAGTC	3 cut(s)	157, 466, 682
Ppu21I	YACGTR	1 cut(s)	194
Psp124BI	GAGCTC	1 cut(s)	591
PspCI	CACGTG	1 cut(s)	194
PspEI	GGTNACC	1 cut(s)	233
PspN4I	GGNNCC	3 cut(s)	156, 284, 654
PspPI	GGNCC	2 cut(s)	154, 736
PsuI	RGATCY	2 cut(s)	250, 679
PvuII	CAGCTG	1 cut(s)	515
RseI	CAYNNNNRTG	2 cut(s)	291, 596
SacI	GAGCTC	1 cut(s)	591
SaqAI	TTAA	3 cut(s)	35, 357, 635
SatI	GCNGC	2 cut(s)	311, 513
Sau3AI	GATC	2 cut(s)	250, 679
Sau96I	GGNCC	2 cut(s)	154, 736
SchI	GAGTC	3 cut(s)	158, 467, 682
SduI	GDGCHC	1 cut(s)	591
SetI	ASST	8 cut(s)	62, 196, 224, 295, 373, 455, 517, 591
SfaNI	GCATC	2 cut(s)	163, 529
SinI	GGWCC	2 cut(s)	154, 736
SmiMI	CAYNNNNRTG	2 cut(s)	291, 596
SmlI	CTYRAG	2 cut(s)	146, 366
SmoI	CTYRAG	2 cut(s)	146, 366
SpeI	ACTAGT	1 cut(s)	593
Sse9I	AATT	1 cut(s)	716
SseBI	AGGCCT	2 cut(s)	48, 497
SsiI	CCGC	1 cut(s)	713
SspI	AATATT	2 cut(s)	40, 728
SspMI	CTAG	3 cut(s)	17, 183, 594
SstI	GAGCTC	1 cut(s)	591
StuI	AGGCCT	2 cut(s)	48, 497
StyI	CCWWGG	1 cut(s)	498
TaaI	ACNGT	2 cut(s)	112, 363
TaiI	ACGT	1 cut(s)	196
TaqI	TCGA	3 cut(s)	431, 456, 619
TaqII	GACCGA	1 cut(s)	142
TasI	AATT	1 cut(s)	716
Tru1I	TTAA	3 cut(s)	35, 357, 635
Tru9I	TTAA	3 cut(s)	35, 357, 635
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	2 cut(s)	310, 512
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	5 cut(s)	13, 17, 341, 575, 635
VpaK11BI	GGWCC	2 cut(s)	154, 736
XmnI	GAANNNNTTC	1 cut(s)	452
XspI	CTAG	3 cut(s)	17, 183, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.