Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000225

Physical Location & Seq

Genomic Coordinates Forward (+)

16231406 .. 16232657

Gene Structure 1252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG132500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAAACGAAGAGAACTAGAGTTCATCAGTTTTTTAAATCTTGTACGCCTTACTGAAAGCTGTGGTGGCTGTTTTACATCCATTGGCAATGTTTATCCTATGATTGGAACTGTGGGTGTCCCCTTGACAACTATTGAAGCCCGGCTTGAGTCGGTCCCAGAACAGGGATATGATGCACTTTCTAGTGTGCGACGTGGAGAGATTTGCCTAAGAGGAAAAACCTTGTTTTCTGGTTACCACAATCGACAAGATCTCACTGAAGAAGTTTATATTGATGGGTGGTTCCATATAGGTGATATTGGAGAATGGCAGCCTAATGGAGCAATGAAAGTTTTAGACAGGAAAAATAACATATTTAAACTGTCTCATGTGAATACGTTGCTGTGGAAAGCATTGAAAGCAAATACTTGCAATGCCCCCTTATCACATCGAAAGGCCTTGGAGGACTGGCCAGCTGAGCATCATCTGACTGATGACTACAAATCATTGTGTCAAAACCTGAAAGGCAAATACATTTTGGATGAGCTCAATAGTACGGGTCAGAAACAACAACTTCGAGGGTTTGAGTTGTTAAAGCCAGTAGTTCATTTGGAACCAAACCCCTTTGACATAGAGAGGGATCTCATGACTCCAACTTTCAAACTGAAAAGACCGCGATTACTCAAATATTACAAGGACCGAGTTGAAAAACTTTATAGTGAAGCAAAGGGTGGAAAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010143 GO:0010311 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0022622 GO:0030054 GO:0031957 GO:0032501 GO:0032502 GO:0032787 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

240

Amino Acids

27.57

Weight (kDa)

8.85

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	17 - 80	7.8e-06	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49430 AT1G49430
fragaria_vesca	FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica	MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica	Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis	pycom10g06680
rosa_chinensis	RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata	RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora	Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii	Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa	Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha	Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana	Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	655
AciI	CCGC	1 cut(s)	653
AclWI	GGATC	1 cut(s)	627
AcoI	YGGCCR	1 cut(s)	449
AcuI	CTGAAG	1 cut(s)	279
AfaI	GTAC	2 cut(s)	45, 535
AfiI	CCNNNNNNNGG	3 cut(s)	104, 163, 164
AgsI	TTSAA	4 cut(s)	137, 397, 640, 686
AjiI	CACGTC	1 cut(s)	194
AluBI	AGCT	3 cut(s)	60, 455, 526
AluI	AGCT	3 cut(s)	60, 455, 526
Alw21I	GWGCWC	1 cut(s)	528
Alw26I	GTCTC	1 cut(s)	369
AlwI	GGATC	1 cut(s)	627
AoxI	GGCC	2 cut(s)	435, 449
ApeKI	GCWGC	1 cut(s)	310
AspS9I	GGNCC	2 cut(s)	154, 676
AsuC2I	CCSGG	1 cut(s)	142
AsuHPI	GGTGA	1 cut(s)	305
AvaII	GGWCC	2 cut(s)	154, 676
BalI	TGGCCA	1 cut(s)	451
BanII	GRGCYC	1 cut(s)	528
Bbv12I	GWGCWC	1 cut(s)	528
BbvI	GCAGC	1 cut(s)	322
BccI	CCATC	1 cut(s)	269
BcnI	CCSGG	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	369
BfaI	CTAG	2 cut(s)	17, 183
BglII	AGATCT	1 cut(s)	250
BisI	GCNGC	1 cut(s)	311
BlpI	GCTNAGC	1 cut(s)	456
BlsI	GCNGC	1 cut(s)	312
Bme1390I	CCNGG	1 cut(s)	142
Bme18I	GGWCC	2 cut(s)	154, 676
BmgBI	CACGTC	1 cut(s)	194
BmgT120I	GGNCC	2 cut(s)	154, 676
BmiI	GGNNCC	3 cut(s)	156, 284, 594
BmrFI	CCNGG	1 cut(s)	142
BmsI	GCATC	2 cut(s)	163, 469
Bpu1102I	GCTNAGC	1 cut(s)	456
BpuEI	CTTGAG	1 cut(s)	167
BpuMI	CCSGG	1 cut(s)	142
BsaJI	CCNNGG	1 cut(s)	438
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 163, 164
Bse1I	ACTGG	2 cut(s)	452, 578
Bse3DI	GCAATG	3 cut(s)	94, 330, 418
BseDI	CCNNGG	1 cut(s)	438
BseGI	GGATG	2 cut(s)	77, 526
BseLI	CCNNNNNNNGG	3 cut(s)	104, 163, 164
BseMI	GCAATG	3 cut(s)	94, 330, 418
BseMII	CTCAG	1 cut(s)	447
BseNI	ACTGG	2 cut(s)	452, 578
BseXI	GCAGC	1 cut(s)	322
Bsh1236I	CGCG	1 cut(s)	655
BshFI	GGCC	2 cut(s)	437, 451
BsiHKAI	GWGCWC	1 cut(s)	528
BsiSI	CCGG	1 cut(s)	142
BslFI	GGGAC	2 cut(s)	104, 140
BslI	CCNNNNNNNGG	3 cut(s)	104, 163, 164
BsmAI	GTCTC	1 cut(s)	369
BsmFI	GGGAC	2 cut(s)	104, 140
BsnI	GGCC	2 cut(s)	437, 451
Bsp1286I	GDGCHC	1 cut(s)	528
Bsp143I	GATC	2 cut(s)	250, 619
Bsp1720I	GCTNAGC	1 cut(s)	456
BspACI	CCGC	1 cut(s)	653
BspANI	GGCC	2 cut(s)	437, 451
BspCNI	CTCAG	1 cut(s)	448
BspFNI	CGCG	1 cut(s)	655
BspHI	TCATGA	1 cut(s)	624
BspLI	GGNNCC	3 cut(s)	156, 284, 594
BspPI	GGATC	1 cut(s)	627
BsrDI	GCAATG	3 cut(s)	94, 330, 418
BsrI	ACTGG	2 cut(s)	452, 578
BssECI	CCNNGG	1 cut(s)	438
BssMI	GATC	2 cut(s)	250, 619
BssT1I	CCWWGG	1 cut(s)	438
Bst4CI	ACNGT	2 cut(s)	112, 363
Bst6I	CTCTTC	1 cut(s)	4
BstC8I	GCNNGC	1 cut(s)	453
BstDEI	CTNAG	2 cut(s)	209, 456
BstEII	GGTNACC	1 cut(s)	233
BstF5I	GGATG	2 cut(s)	77, 526
BstFNI	CGCG	1 cut(s)	655
BstKTI	GATC	2 cut(s)	253, 622
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	2 cut(s)	250, 619
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 398, 457
BstPI	GGTNACC	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	140
BstUI	CGCG	1 cut(s)	655
BstV1I	GCAGC	1 cut(s)	322
BstX2I	RGATCY	2 cut(s)	250, 619
BstYI	RGATCY	2 cut(s)	250, 619
BsuRI	GGCC	2 cut(s)	437, 451
BtrI	CACGTC	1 cut(s)	194
BtsCI	GGATG	2 cut(s)	77, 526
BtsIMutI	CAGTG	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	453
CciI	TCATGA	1 cut(s)	624
Cfr13I	GGNCC	2 cut(s)	154, 676
Csp6I	GTAC	2 cut(s)	44, 534
CviAII	CATG	2 cut(s)	368, 625
CviQI	GTAC	2 cut(s)	44, 534
DdeI	CTNAG	2 cut(s)	209, 456
DpnI	GATC	2 cut(s)	252, 621
DpnII	GATC	2 cut(s)	250, 619
DraI	TTTAAA	2 cut(s)	36, 358
EaeI	YGGCCR	1 cut(s)	449
Eam1104I	CTCTTC	1 cut(s)	4
EarI	CTCTTC	1 cut(s)	4
Ecl136II	GAGCTC	1 cut(s)	526
Eco130I	CCWWGG	1 cut(s)	438
Eco147I	AGGCCT	1 cut(s)	437
Eco24I	GRGCYC	1 cut(s)	528
Eco47I	GGWCC	2 cut(s)	154, 676
Eco53kI	GAGCTC	1 cut(s)	526
Eco57I	CTGAAG	1 cut(s)	279
Eco91I	GGTNACC	1 cut(s)	233
EcoICRI	GAGCTC	1 cut(s)	526
EcoO65I	GGTNACC	1 cut(s)	233
EcoT14I	CCWWGG	1 cut(s)	438
EcoT38I	GRGCYC	1 cut(s)	528
ErhI	CCWWGG	1 cut(s)	438
FaeI	CATG	2 cut(s)	371, 628
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FaqI	GGGAC	2 cut(s)	104, 140
FatI	CATG	2 cut(s)	367, 624
Fnu4HI	GCNGC	1 cut(s)	311
FokI	GGATG	2 cut(s)	64, 533
FriOI	GRGCYC	1 cut(s)	528
Fsp4HI	GCNGC	1 cut(s)	311
FspBI	CTAG	2 cut(s)	17, 183
GluI	GCNGC	1 cut(s)	311
HaeIII	GGCC	2 cut(s)	437, 451
HapII	CCGG	1 cut(s)	142
Hin1II	CATG	2 cut(s)	371, 628
HinfI	GANTC	2 cut(s)	149, 628
HpaII	CCGG	1 cut(s)	142
HphI	GGTGA	1 cut(s)	305
Hpy188I	TCNGA	2 cut(s)	468, 543
Hpy188III	TCNNGA	1 cut(s)	625
Hpy99I	CGWCG	1 cut(s)	195
HpyCH4III	ACNGT	2 cut(s)	112, 363
HpyCH4IV	ACGT	2 cut(s)	193, 377
HpyCH4V	TGCA	2 cut(s)	176, 411
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 398, 457
HpyF3I	CTNAG	2 cut(s)	209, 456
HpySE526I	ACGT	2 cut(s)	193, 377
Hsp92II	CATG	2 cut(s)	371, 628
Kzo9I	GATC	2 cut(s)	250, 619
LmnI	GCTCC	1 cut(s)	320
LpnPI	CCDG	9 cut(s)	149, 155, 171, 216, 325, 433, 465, 512, 591
Lsp1109I	GCAGC	1 cut(s)	322
LweI	GCATC	2 cut(s)	163, 469
MaeI	CTAG	2 cut(s)	17, 183
MaeII	ACGT	2 cut(s)	193, 377
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	2 cut(s)	252, 621
MboI	GATC	2 cut(s)	250, 619
MboII	GAAGA	2 cut(s)	21, 272
MflI	RGATCY	2 cut(s)	250, 619
MhlI	GDGCHC	1 cut(s)	528
MlsI	TGGCCA	1 cut(s)	451
MluNI	TGGCCA	1 cut(s)	451
MlyI	GAGTC	2 cut(s)	158, 622
MmeI	TCCRAC	1 cut(s)	656
MnlI	CCTC	4 cut(s)	206, 436, 551, 609
Mox20I	TGGCCA	1 cut(s)	451
MscI	TGGCCA	1 cut(s)	451
MseI	TTAA	3 cut(s)	35, 357, 572
MslI	CAYNNNNRTG	1 cut(s)	291
Msp20I	TGGCCA	1 cut(s)	451
MspA1I	CMGCKG	1 cut(s)	455
MspI	CCGG	1 cut(s)	142
MspR9I	CCNGG	1 cut(s)	142
MvnI	CGCG	1 cut(s)	655
MwoI	GCNNNNNNNGC	3 cut(s)	66, 398, 457
NciI	CCSGG	1 cut(s)	142
NdeII	GATC	2 cut(s)	250, 619
NlaIII	CATG	2 cut(s)	371, 628
NlaIV	GGNNCC	3 cut(s)	156, 284, 594
PagI	TCATGA	1 cut(s)	624
PceI	AGGCCT	1 cut(s)	437
PkrI	GCNGC	1 cut(s)	312
PleI	GAGTC	2 cut(s)	157, 622
PpsI	GAGTC	2 cut(s)	157, 622
Psp124BI	GAGCTC	1 cut(s)	528
PspEI	GGTNACC	1 cut(s)	233
PspN4I	GGNNCC	3 cut(s)	156, 284, 594
PspPI	GGNCC	2 cut(s)	154, 676
PsuI	RGATCY	2 cut(s)	250, 619
PvuII	CAGCTG	1 cut(s)	455
RsaI	GTAC	2 cut(s)	45, 535
RsaNI	GTAC	2 cut(s)	44, 534
RseI	CAYNNNNRTG	1 cut(s)	291
SacI	GAGCTC	1 cut(s)	528
SaqAI	TTAA	3 cut(s)	35, 357, 572
SatI	GCNGC	1 cut(s)	311
Sau3AI	GATC	2 cut(s)	250, 619
Sau96I	GGNCC	2 cut(s)	154, 676
SchI	GAGTC	2 cut(s)	158, 622
ScrFI	CCNGG	1 cut(s)	142
SduI	GDGCHC	1 cut(s)	528
SetI	ASST	8 cut(s)	62, 196, 224, 295, 380, 457, 501, 528
SfaNI	GCATC	2 cut(s)	163, 469
SinI	GGWCC	2 cut(s)	154, 676
SmiMI	CAYNNNNRTG	1 cut(s)	291
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
SseBI	AGGCCT	1 cut(s)	437
SsiI	CCGC	1 cut(s)	653
SspI	AATATT	1 cut(s)	668
SspMI	CTAG	2 cut(s)	17, 183
SstI	GAGCTC	1 cut(s)	528
StuI	AGGCCT	1 cut(s)	437
StyD4I	CCNGG	1 cut(s)	140
StyI	CCWWGG	1 cut(s)	438
TaaI	ACNGT	2 cut(s)	112, 363
TaiI	ACGT	2 cut(s)	196, 380
TaqI	TCGA	3 cut(s)	244, 430, 556
TaqII	GACCGA	2 cut(s)	142, 693
Tru1I	TTAA	3 cut(s)	35, 357, 572
Tru9I	TTAA	3 cut(s)	35, 357, 572
TscAI	CASTG	1 cut(s)	262
TseI	GCWGC	1 cut(s)	310
TspDTI	ATGAA	4 cut(s)	13, 17, 341, 575
TspRI	CASTG	1 cut(s)	262
VpaK11BI	GGWCC	2 cut(s)	154, 676
XspI	CTAG	2 cut(s)	17, 183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.