Rh6CG111800

Thioredoxin-like 1-2, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000225
Physical Location & Seq
Forward (+)
12853741 .. 12860964
7224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG111800.1

Sequence Viewer

Length: 429 bp
ATGAAAAATATGACCGGAAGAGTGGAGAATTTTGGAGGTGATGGTGAATATGTACCCCAGATTTCTCAGCTGGCTGAACAATTCCAGATGCAATTTTTCTTTCTTAAGGTTAACTATGAAGAGCTCAACACTATGTGCCATGGTCTCCACATTCATGTGATACCATTCTTTAGGTTTTATAGAGGCGCAGAAGGGCGAGCATGTAGCTTCGGCTGCACCATTGCCGCTGATGTCAGATTCATCAATTTGAACTGTTCACATGTATGTGCTCCATGTACATTTTGGATGAGCTCAATACTTCGAGGGTTTGAGTTGTTAAAAGCAGTTCATTTGGAACCAAACCCCTTTGACATAGAGAGGGATCTCATGACTCCCAATTTTCAAACTGAAAAGACCGCAATTACTCAAATATTACAAGGAGCGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thioredoxin

Protein Analysis

142

Amino Acids

16.19

Weight (kDa)

5.91

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000225)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49430 AT1G49430
fragaria_vesca FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis pycom10g06680
rosa_chinensis RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 422
AciI CCGC 3 cut(s) 225, 396, 422
AclWI GGATC 1 cut(s) 369
AcsI RAATTY 1 cut(s) 28
AdeI CACNNNGTG 1 cut(s) 135
AfaI GTAC 2 cut(s) 54, 277
AflII CTTAAG 1 cut(s) 104
AflIII ACRYGT 1 cut(s) 259
AgsI TTSAA 2 cut(s) 250, 383
AluBI AGCT 4 cut(s) 70, 124, 207, 291
AluI AGCT 4 cut(s) 70, 124, 207, 291
Alw21I GWGCWC 3 cut(s) 126, 271, 293
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 1 cut(s) 369
ApeKI GCWGC 1 cut(s) 213
ApoI RAATTY 1 cut(s) 28
AspLEI GCGC 1 cut(s) 188
AsuHPI GGTGA 2 cut(s) 50, 56
BanII GRGCYC 2 cut(s) 126, 293
Bbv12I GWGCWC 3 cut(s) 126, 271, 293
BbvI GCAGC 1 cut(s) 200
BccI CCATC 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 149
BfrI CTTAAG 1 cut(s) 104
BisI GCNGC 2 cut(s) 214, 225
BlsI GCNGC 2 cut(s) 215, 226
BmiI GGNNCC 1 cut(s) 336
BmsI GCATC 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 1 cut(s) 139
BsaWI WCCGGW 1 cut(s) 14
Bse3DI GCAATG 1 cut(s) 219
BseDI CCNNGG 1 cut(s) 139
BseGI GGATG 1 cut(s) 291
BseMI GCAATG 1 cut(s) 219
BseMII CTCAG 1 cut(s) 80
BseXI GCAGC 1 cut(s) 200
BsgI GTGCAG 1 cut(s) 199
BsiHKAI GWGCWC 3 cut(s) 126, 271, 293
BsiSI CCGG 1 cut(s) 15
BsmAI GTCTC 1 cut(s) 149
Bso31I GGTCTC 1 cut(s) 149
Bsp1286I GDGCHC 3 cut(s) 126, 271, 293
Bsp1407I TGTACA 1 cut(s) 275
Bsp143I GATC 1 cut(s) 361
Bsp19I CCATGG 1 cut(s) 139
BspACI CCGC 3 cut(s) 225, 396, 422
BspCNI CTCAG 1 cut(s) 79
BspHI TCATGA 1 cut(s) 366
BspLI GGNNCC 1 cut(s) 336
BspPI GGATC 1 cut(s) 369
BspQI GCTCTTC 1 cut(s) 114
BspTI CTTAAG 1 cut(s) 104
BspTNI GGTCTC 1 cut(s) 149
BsrBI CCGCTC 1 cut(s) 422
BsrDI GCAATG 1 cut(s) 219
BsrGI TGTACA 1 cut(s) 275
BssECI CCNNGG 1 cut(s) 139
BssMI GATC 1 cut(s) 361
BssT1I CCWWGG 1 cut(s) 139
Bst4CI ACNGT 1 cut(s) 254
Bst6I CTCTTC 2 cut(s) 13, 114
BstAFI CTTAAG 1 cut(s) 104
BstAUI TGTACA 1 cut(s) 275
BstC8I GCNNGC 2 cut(s) 72, 198
BstDEI CTNAG 1 cut(s) 66
BstDSI CCRYGG 1 cut(s) 139
BstF5I GGATG 1 cut(s) 291
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 1 cut(s) 364
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 1 cut(s) 361
BstMWI GCNNNNNNNGC 1 cut(s) 213
BstNSI RCATGY 2 cut(s) 204, 263
BstV1I GCAGC 1 cut(s) 200
BstX2I RGATCY 1 cut(s) 361
BstYI RGATCY 1 cut(s) 361
BtgI CCRYGG 1 cut(s) 139
BtsCI GGATG 1 cut(s) 291
Cac8I GCNNGC 2 cut(s) 72, 198
CciI TCATGA 1 cut(s) 366
CfoI GCGC 1 cut(s) 188
Csp6I GTAC 2 cut(s) 53, 276
CviAII CATG 6 cut(s) 140, 155, 201, 260, 273, 367
CviJI RGCY 6 cut(s) 70, 74, 124, 207, 213, 291
CviKI_1 RGCY 6 cut(s) 70, 74, 124, 207, 213, 291
CviQI GTAC 2 cut(s) 53, 276
DdeI CTNAG 1 cut(s) 66
DpnI GATC 1 cut(s) 363
DpnII GATC 1 cut(s) 361
DraIII CACNNNGTG 1 cut(s) 135
Eam1104I CTCTTC 2 cut(s) 13, 114
EarI CTCTTC 2 cut(s) 13, 114
Ecl136II GAGCTC 2 cut(s) 124, 291
Eco130I CCWWGG 1 cut(s) 139
Eco24I GRGCYC 2 cut(s) 126, 293
Eco31I GGTCTC 1 cut(s) 149
Eco53kI GAGCTC 2 cut(s) 124, 291
EcoICRI GAGCTC 2 cut(s) 124, 291
EcoT14I CCWWGG 1 cut(s) 139
EcoT38I GRGCYC 2 cut(s) 126, 293
ErhI CCWWGG 1 cut(s) 139
FaeI CATG 6 cut(s) 143, 158, 204, 263, 276, 370
FatI CATG 6 cut(s) 139, 154, 200, 259, 272, 366
FauI CCCGC 1 cut(s) 415
Fnu4HI GCNGC 2 cut(s) 214, 225
FokI GGATG 1 cut(s) 298
FriOI GRGCYC 2 cut(s) 126, 293
Fsp4HI GCNGC 2 cut(s) 214, 225
GlaI GCGC 1 cut(s) 187
GluI GCNGC 2 cut(s) 214, 225
HapII CCGG 1 cut(s) 15
HhaI GCGC 1 cut(s) 188
Hin1II CATG 6 cut(s) 143, 158, 204, 263, 276, 370
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 2 cut(s) 237, 370
HpaI GTTAAC 1 cut(s) 112
HpaII CCGG 1 cut(s) 15
HphI GGTGA 2 cut(s) 50, 56
Hpy166II GTNNAC 2 cut(s) 112, 257
Hpy188I TCNGA 1 cut(s) 236
Hpy188III TCNNGA 2 cut(s) 85, 367
Hpy8I GTNNAC 2 cut(s) 112, 257
HpyAV CCTTC 1 cut(s) 185
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4V TGCA 2 cut(s) 91, 216
HpyF10VI GCNNNNNNNGC 1 cut(s) 213
HpyF3I CTNAG 1 cut(s) 66
Hsp92II CATG 6 cut(s) 143, 158, 204, 263, 276, 370
HspAI GCGC 1 cut(s) 186
KspAI GTTAAC 1 cut(s) 112
Kzo9I GATC 1 cut(s) 361
LguI GCTCTTC 1 cut(s) 114
LmnI GCTCC 2 cut(s) 274, 419
LpnPI CCDG 4 cut(s) 28, 56, 71, 98
Lsp1109I GCAGC 1 cut(s) 200
LweI GCATC 1 cut(s) 78
MalI GATC 1 cut(s) 363
MbiI CCGCTC 1 cut(s) 422
MboI GATC 1 cut(s) 361
MboII GAAGA 2 cut(s) 30, 131
MflI RGATCY 1 cut(s) 361
MhlI GDGCHC 3 cut(s) 126, 271, 293
MluCI AATT 6 cut(s) 28, 80, 92, 244, 376, 399
MlyI GAGTC 1 cut(s) 364
MnlI CCTC 4 cut(s) 29, 176, 296, 351
MseI TTAA 3 cut(s) 105, 111, 317
MslI CAYNNNNRTG 4 cut(s) 153, 155, 262, 264
MspA1I CMGCKG 2 cut(s) 70, 227
MspCI CTTAAG 1 cut(s) 104
MspI CCGG 1 cut(s) 15
MwoI GCNNNNNNNGC 1 cut(s) 213
NcoI CCATGG 1 cut(s) 139
NdeII GATC 1 cut(s) 361
NlaIII CATG 6 cut(s) 143, 158, 204, 263, 276, 370
NlaIV GGNNCC 1 cut(s) 336
NspI RCATGY 2 cut(s) 204, 263
PagI TCATGA 1 cut(s) 366
PciI ACATGT 1 cut(s) 259
PciSI GCTCTTC 1 cut(s) 114
PfeI GAWTC 1 cut(s) 237
PkrI GCNGC 2 cut(s) 215, 226
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
PscI ACATGT 1 cut(s) 259
Psp124BI GAGCTC 2 cut(s) 126, 293
PspN4I GGNNCC 1 cut(s) 336
PsuI RGATCY 1 cut(s) 361
PvuII CAGCTG 1 cut(s) 70
RsaI GTAC 2 cut(s) 54, 277
RsaNI GTAC 2 cut(s) 53, 276
RseI CAYNNNNRTG 4 cut(s) 153, 155, 262, 264
SacI GAGCTC 2 cut(s) 126, 293
SapI GCTCTTC 1 cut(s) 114
SaqAI TTAA 3 cut(s) 105, 111, 317
SatI GCNGC 2 cut(s) 214, 225
Sau3AI GATC 1 cut(s) 361
SchI GAGTC 1 cut(s) 364
SduI GDGCHC 3 cut(s) 126, 271, 293
SetI ASST 7 cut(s) 40, 72, 111, 126, 176, 209, 293
SfaNI GCATC 1 cut(s) 78
SmiMI CAYNNNNRTG 4 cut(s) 153, 155, 262, 264
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 6 cut(s) 28, 80, 92, 244, 376, 399
SsiI CCGC 3 cut(s) 225, 396, 422
SspI AATATT 1 cut(s) 411
SstI GAGCTC 2 cut(s) 126, 293
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 254
TaqI TCGA 1 cut(s) 301
TasI AATT 6 cut(s) 28, 80, 92, 244, 376, 399
TatI WGTACW 1 cut(s) 275
TauI GCSGC 1 cut(s) 227
TfiI GAWTC 1 cut(s) 237
Tru1I TTAA 3 cut(s) 105, 111, 317
Tru9I TTAA 3 cut(s) 105, 111, 317
TseI GCWGC 1 cut(s) 213
TspDTI ATGAA 5 cut(s) 17, 132, 143, 229, 317
Vha464I CTTAAG 1 cut(s) 104
XapI RAATTY 1 cut(s) 28
XceI RCATGY 2 cut(s) 204, 263
XcmI CCANNNNNNNNNTGG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.