Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000225

Physical Location & Seq

Genomic Coordinates Reverse (-)

16437568 .. 16438598

Gene Structure 1031 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23461

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGCATATAACTAGTTGGCAAATCTGGATAAGGGTTAACCACAAAAAAAATGCGGCACCTCTCTTGGACAAGCTTTTGTTTCACAAGATAAAACAAGCATTAGGAGGACGAGTTCGTATAATGTTGTCTGGTGCTGCGCCTTTGCCCAGGCATGTGGAGGAATTTTTTAGGGTCACCAGCTGCAGCACTTTATCACAAGGATATGGCCGTACTGAAAGCTGTGGTGGCTGTTTTACGTCCATTGGCAATGTTTATCCTATGATTGGAACTGTTGGTGCCCCCCTGACAACTATTGAAGCACGGCTTGAGTCAGTCCCAGAACTGGGATATGATGCACTTTCTAGTGTGCCACGTGGAGAGATTTGCCTCAGAGGGAAAACCTTGTTTTCTGGTTACCACAAGCGACAAGTTCTCAGTCCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010143 GO:0010311 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0022622 GO:0030054 GO:0031957 GO:0032501 GO:0032502 GO:0032787 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

141

Amino Acids

15.59

Weight (kDa)

9.65

Isoelectric Point (pI)

54.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	21 - 133	4.8e-19	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49430 AT1G49430
fragaria_vesca	FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica	MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica	Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis	pycom10g06680
rosa_chinensis	RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata	RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora	Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii	Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa	Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha	Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana	Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	55, 275
AciI	CCGC	1 cut(s)	53
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	1 cut(s)	161
AcvI	CACGTG	1 cut(s)	353
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	3 cut(s)	263, 322, 323
AgsI	TTSAA	1 cut(s)	296
AhlI	ACTAGT	1 cut(s)	11
AjnI	CCWGG	1 cut(s)	146
AloI	GAACNNNNNNTCC	2 cut(s)	96, 128
AluBI	AGCT	3 cut(s)	73, 180, 219
AluI	AGCT	3 cut(s)	73, 180, 219
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	3 cut(s)	134, 180, 183
ApoI	RAATTY	1 cut(s)	161
AspLEI	GCGC	1 cut(s)	139
AsuHPI	GGTGA	1 cut(s)	166
BaeGI	GKGCMC	1 cut(s)	280
BanI	GGYRCC	2 cut(s)	55, 275
BbrPI	CACGTG	1 cut(s)	353
BbvI	GCAGC	3 cut(s)	121, 167, 195
BceAI	ACGGC	2 cut(s)	192, 317
BciT130I	CCWGG	1 cut(s)	148
BcuI	ACTAGT	1 cut(s)	11
BfaI	CTAG	2 cut(s)	12, 342
BfmI	CTRYAG	1 cut(s)	181
BisI	GCNGC	4 cut(s)	54, 135, 181, 184
BlsI	GCNGC	4 cut(s)	55, 136, 182, 185
Bme1390I	CCNGG	1 cut(s)	148
BmiI	GGNNCC	2 cut(s)	57, 277
BmrFI	CCNGG	1 cut(s)	148
BmrI	ACTGGG	1 cut(s)	332
BmsI	GCATC	1 cut(s)	322
BmuI	ACTGGG	1 cut(s)	332
BpuEI	CTTGAG	1 cut(s)	326
BsaAI	YACGTR	1 cut(s)	353
BsaJI	CCNNGG	1 cut(s)	146
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	3 cut(s)	263, 322, 323
Bse1I	ACTGG	1 cut(s)	327
Bse3DI	GCAATG	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	1 cut(s)	146
BseLI	CCNNNNNNNGG	3 cut(s)	263, 322, 323
BseMI	GCAATG	1 cut(s)	253
BseMII	CTCAG	1 cut(s)	382
BseNI	ACTGG	1 cut(s)	327
BseSI	GKGCMC	1 cut(s)	280
BseXI	GCAGC	3 cut(s)	121, 167, 195
BshFI	GGCC	1 cut(s)	207
BshNI	GGYRCC	2 cut(s)	55, 275
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	3 cut(s)	263, 322, 323
BsmFI	GGGAC	1 cut(s)	299
BsnI	GGCC	1 cut(s)	207
Bsp1286I	GDGCHC	1 cut(s)	280
BspACI	CCGC	1 cut(s)	53
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	2 cut(s)	381, 426
BspLI	GGNNCC	2 cut(s)	57, 277
BspMAI	CTGCAG	1 cut(s)	185
BspT107I	GGYRCC	2 cut(s)	55, 275
BsrDI	GCAATG	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	327
BssECI	CCNNGG	1 cut(s)	146
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	1 cut(s)	271
BstBAI	YACGTR	1 cut(s)	353
BstDEI	CTNAG	2 cut(s)	368, 413
BstEII	GGTNACC	2 cut(s)	172, 392
BstHHI	GCGC	1 cut(s)	139
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BstNI	CCWGG	1 cut(s)	148
BstNSI	RCATGY	1 cut(s)	155
BstPI	GGTNACC	2 cut(s)	172, 392
BstSCI	CCNGG	1 cut(s)	146
BstSFI	CTRYAG	1 cut(s)	181
BstSLI	GKGCMC	1 cut(s)	280
BstV1I	GCAGC	3 cut(s)	121, 167, 195
BstXI	CCANNNNNNTGG	1 cut(s)	154
BsuRI	GGCC	1 cut(s)	207
CfoI	GCGC	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	1 cut(s)	152
CviJI	RGCY	6 cut(s)	73, 180, 207, 219, 228, 304
CviKI_1	RGCY	6 cut(s)	73, 180, 207, 219, 228, 304
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	2 cut(s)	368, 413
EaeI	YGGCCR	1 cut(s)	205
Eco72I	CACGTG	1 cut(s)	353
Eco91I	GGTNACC	2 cut(s)	172, 392
EcoO65I	GGTNACC	2 cut(s)	172, 392
EcoRII	CCWGG	1 cut(s)	146
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	155
FaiI	YATR	7 cut(s)	6, 8, 119, 153, 204, 260, 330
FalI	AAGNNNNNCTT	2 cut(s)	288, 320
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	1 cut(s)	151
Fnu4HI	GCNGC	4 cut(s)	54, 135, 181, 184
Fsp4HI	GCNGC	4 cut(s)	54, 135, 181, 184
FspBI	CTAG	2 cut(s)	12, 342
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	4 cut(s)	54, 135, 181, 184
HaeIII	GGCC	1 cut(s)	207
HhaI	GCGC	1 cut(s)	139
Hin1II	CATG	1 cut(s)	155
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	1 cut(s)	308
HpaI	GTTAAC	1 cut(s)	37
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	1 cut(s)	371
Hpy188III	TCNNGA	1 cut(s)	25
Hpy8I	GTNNAC	1 cut(s)	37
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	2 cut(s)	236, 352
HpyCH4V	TGCA	3 cut(s)	4, 183, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
HpyF3I	CTNAG	2 cut(s)	368, 413
HpySE526I	ACGT	2 cut(s)	236, 352
Hsp92II	CATG	1 cut(s)	155
HspAI	GCGC	1 cut(s)	137
KspAI	GTTAAC	1 cut(s)	37
LpnPI	CCDG	9 cut(s)	10, 114, 133, 160, 190, 296, 308, 330, 375
Lsp1109I	GCAGC	3 cut(s)	121, 167, 195
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	2 cut(s)	12, 342
MaeII	ACGT	2 cut(s)	236, 352
MaeIII	GTNAC	2 cut(s)	172, 392
MhlI	GDGCHC	1 cut(s)	280
MluCI	AATT	1 cut(s)	161
MlyI	GAGTC	1 cut(s)	317
MnlI	CCTC	5 cut(s)	69, 98, 151, 365, 377
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	36
MspA1I	CMGCKG	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	148
MvaI	CCWGG	1 cut(s)	148
MwoI	GCNNNNNNNGC	1 cut(s)	225
NlaIII	CATG	1 cut(s)	155
NlaIV	GGNNCC	2 cut(s)	57, 277
NmuCI	GTSAC	1 cut(s)	172
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	155
PkrI	GCNGC	4 cut(s)	55, 136, 182, 185
PleI	GAGTC	1 cut(s)	316
PmaCI	CACGTG	1 cut(s)	353
PmlI	CACGTG	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	316
Ppu21I	YACGTR	1 cut(s)	353
Psp6I	CCWGG	1 cut(s)	146
PspCI	CACGTG	1 cut(s)	353
PspEI	GGTNACC	2 cut(s)	172, 392
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	2 cut(s)	57, 277
PstI	CTGCAG	1 cut(s)	185
PvuII	CAGCTG	1 cut(s)	180
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	4 cut(s)	54, 135, 181, 184
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	1 cut(s)	148
SduI	GDGCHC	1 cut(s)	280
SetI	ASST	7 cut(s)	61, 75, 182, 221, 239, 355, 383
SfaNI	GCATC	1 cut(s)	322
SfcI	CTRYAG	1 cut(s)	181
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
SpeI	ACTAGT	1 cut(s)	11
Sse9I	AATT	1 cut(s)	161
SsiI	CCGC	1 cut(s)	53
SspMI	CTAG	2 cut(s)	12, 342
StyD4I	CCNGG	1 cut(s)	146
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	2 cut(s)	239, 355
TasI	AATT	1 cut(s)	161
TauI	GCSGC	1 cut(s)	56
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	3 cut(s)	134, 180, 183
Tsp45I	GTSAC	1 cut(s)	172
XapI	RAATTY	1 cut(s)	161
XceI	RCATGY	1 cut(s)	155
XspI	CTAG	2 cut(s)	12, 342
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.