Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000225

Physical Location & Seq

Genomic Coordinates Forward (+)

44579542 .. 44582738

Gene Structure 3197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG177500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGGAGAATGGCAGCCTAATGGAGCAATGAAAGTTATAGACAGGAAAAAGGAAGTATTTAAACTGTCTCGTGGTGAATATGTTGCTGTGGAAAGCGTTGAAAGCAAATACTTGCAATGCCCCCTTGTCACATCGATATGGGTTTATGGGAACGGCTTTGAGTCATTTCTTGTTGCTGTGGTTGTTCCTGGCAGAAAAGCCTTGGAGGACTGGGCAGCTGAGCATCATTTGACTGATGATTACAAATCATTGTGTCAAAACCTGAGAGCAAGAAATTACATTTTGGATGAGCTTAATATTACGGGACAGATAGCTGAACATCATTTGACCGATGACTTTAGATCATTGTGTCAAAACCAGAGGGCAAGATATGAATTTTGGATGAGTTTCCAGATTCTGGGGAAAATCACTTTGACATGGAGAGTGATCTCTCAGAACTTTCAAATGAGAGAGTACATGCAAGATTGGCTTGTTACGACTACAGCCATACATGGAGTTCTGTATACCGTTGCCGGCAAATTCCAACCGCTGCCTCAAGATATTTATCGCTATGATTGGAGGGAACCTTTCAGTCTACCGAGAGGGTGGCTTTTGTGGGCTGGGATTGGTCTTGTTGGTGCTGTAGTTGCTGTGGCATTGACAGGGGCTGCCACGTCCTTTTTCAGTGGGCAAACCCCAGAAAGAGAGATCAAAGCTTTTGGGATGATATTGAGGATGGGCGAAGGCCTTTGGGTCCTTTTGGCTTACAACAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010143 GO:0010311 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0022622 GO:0030054 GO:0031957 GO:0032501 GO:0032502 GO:0032787 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

251

Amino Acids

28.9

Weight (kDa)

6.97

Isoelectric Point (pI)

24.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49430 AT1G49430
fragaria_vesca	FvH4_2g07450 FvH4_2g07450 FvH4_2g07450 FvH4_6g05950 FvH4_6g05960
malus_domestica	MD05G1070800.v1.1 MD10G1085200.v1.1 MD10G1085400.v1.1
prunus_persica	Prupe.8G108400_v2.0.a1 Prupe.8G108600_v2.0.a1 Prupe.8G108900_v2.0.a1
pyrus_communis	pycom10g06680
rosa_chinensis	RchiOBHm_Chr0c38g0502991 RchiOBHm_Chr0c38g0503001 RchiOBHm_Chr0c38g0503011 RchiOBHm_Chr0c38g0503031 RchiOBHm_Chr1g0351481 RchiOBHm_Chr6g0261071 RchiOBHm_Chr6g0261081 RchiOBHm_Chr6g0261101 RchiOBHm_Chr6g0261171 RchiOBHm_Chr6g0261181 RchiOBHm_Chr6g0261201 RchiOBHm_Chr6g0261211 RchiOBHm_Chr6g0261271 RchiOBHm_Chr6g0261291 RchiOBHm_Chr6g0261301 RchiOBHm_Chr6g0261311 RchiOBHm_Chr6g0261431 RchiOBHm_Chr6g0261521 RchiOBHm_Chr6g0261591 RchiOBHm_Chr6g0261601 RchiOBHm_Chr6g0261611 RchiOBHm_Chr6g0261621 RchiOBHm_Chr6g0261631 RchiOBHm_Chr6g0261651 RchiOBHm_Chr6g0261671 RchiOBHm_Chr6g0261761 RchiOBHm_Chr6g0261791 RchiOBHm_Chr6g0261801 RchiOBHm_Chr6g0261891 RchiOBHm_Chr6g0261911 RchiOBHm_Chr6g0261921 RchiOBHm_Chr6g0261931 RchiOBHm_Chr6g0261951 RchiOBHm_Chr6g0261961 RchiOBHm_Chr6g0261981 RchiOBHm_Chr6g0262641 RchiOBHm_Chr6g0262661 RchiOBHm_Chr6g0262711 RchiOBHm_Chr6g0262721 RchiOBHm_Chr6g0262801 RchiOBHm_Chr6g0262811 RchiOBHm_Chr6g0262821 RchiOBHm_Chr6g0262831 RchiOBHm_Chr6g0262871 RchiOBHm_Chr6g0262881 RchiOBHm_Chr6g0267811
rosa_laevigata	RLG00000014207 RLG00000014410 RLG00000014461 RLG00000014462 RLG00000014463 RLG00000030683
rosa_multiflora	Rmu_co8313283.1_g000002 Rmu_sc0000596.1_g000052 Rmu_sc0001833.1_g000009 Rmu_sc0003487.1_g000003 Rmu_sc0003487.1_g000007 Rmu_sc0004766.1_g000001 Rmu_sc0005237.1_g000021 Rmu_sc0006655.1_g000001 Rmu_sc0015236.1_g000003 Rmu_sc0015236.1_g000004 Rmu_sc0028652.1_g000010 Rmu_sc0031142.1_g000001 Rmu_sc0036063.1_g000001 Rmu_ssc0000359.1_g000047 Rmu_ssc0000359.1_g000054 Rmu_ssc0000359.1_g000058 Rmu_ssc0000359.1_g000060
rosa_roxburghii	Rroxscaffold_175G00432240 Rroxscaffold_177G00434140 Rroxscaffold_177G00434220 Rroxscaffold_2G00103180 Rroxscaffold_2G00103450 Rroxscaffold_4G00314540 Rroxscaffold_7G00202920 Rroxscaffold_7G00202940 Rroxscaffold_7G00207640 Rroxscaffold_7G00207650 Rroxscaffold_7G00207670 Rroxscaffold_7G00207690 Rroxscaffold_7G00207700 Rroxscaffold_7G00207720
rosa_rugosa	Rorug05G0594700 Rorug05G0594900 Rorug06G0013300 Rorug07G0072100
rosa_samantha	Rh4AG177500 Rh5AG318000 Rh6AG114200 Rh6AG120600 Rh6AG137000 Rh6AG137100 Rh6AG161100 Rh6BG107900 Rh6BG108000 Rh6BG108200 Rh6BG108300 Rh6BG108400 Rh6BG113800 Rh6BG134400 Rh6BG134500 Rh6BG134600 Rh6BG134700 Rh6BG134900 Rh6BG135100 Rh6BG135300 Rh6BG135400 Rh6CG105000 Rh6CG105100 Rh6CG105500 Rh6CG105600 Rh6CG105700 Rh6CG105800 Rh6CG111800 Rh6CG132500 Rh6CG132900 Rh6CG133000 Rh6CG133200 Rh6CG133400 Rh6CG133500 Rh6CG133600 Rh6CG133700 Rh6CG133800 Rh6CG152600 Rh6CG159000 Rh6DG120200
rosa_wichuraiana	Rw0G012740 Rw6G002860 Rw6G009790 Rw6G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	397
AccI	GTMKAC	2 cut(s)	503, 574
AciI	CCGC	1 cut(s)	527
AcsI	RAATTY	2 cut(s)	374, 518
AfaI	GTAC	1 cut(s)	455
AfiI	CCNNNNNNNGG	1 cut(s)	397
AgsI	TTSAA	2 cut(s)	101, 443
AjiI	CACGTC	1 cut(s)	654
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	4 cut(s)	218, 292, 314, 695
AluI	AGCT	4 cut(s)	218, 292, 314, 695
Alw26I	GTCTC	1 cut(s)	72
AlwNI	CAGNNNCTG	2 cut(s)	397, 647
AoxI	GGCC	1 cut(s)	724
ApeKI	GCWGC	4 cut(s)	13, 215, 529, 647
ApoI	RAATTY	2 cut(s)	374, 518
AspS9I	GGNCC	1 cut(s)	733
AsuHPI	GGTGA	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	733
BauI	CACGAG	1 cut(s)	69
BbvI	GCAGC	4 cut(s)	25, 227, 516, 634
BccI	CCATC	1 cut(s)	709
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	189
BcoDI	GTCTC	1 cut(s)	72
BfmI	CTRYAG	2 cut(s)	480, 621
BisI	GCNGC	4 cut(s)	14, 216, 530, 648
BlpI	GCTNAGC	1 cut(s)	219
BlsI	GCNGC	4 cut(s)	15, 217, 531, 649
Bme1390I	CCNGG	1 cut(s)	189
Bme18I	GGWCC	1 cut(s)	733
BmgBI	CACGTC	1 cut(s)	654
BmgT120I	GGNCC	1 cut(s)	733
BmiI	GGNNCC	2 cut(s)	564, 734
BmrFI	CCNGG	1 cut(s)	189
BmrI	ACTGGG	1 cut(s)	220
BmsI	GCATC	1 cut(s)	232
BmuI	ACTGGG	1 cut(s)	220
Bpu1102I	GCTNAGC	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	519
Bsa29I	ATCGAT	1 cut(s)	134
BsaBI	GATNNNNATC	1 cut(s)	543
BsaJI	CCNNGG	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	1 cut(s)	397
Bse118I	RCCGGY	1 cut(s)	512
Bse1I	ACTGG	1 cut(s)	215
Bse3DI	GCAATG	2 cut(s)	33, 122
Bse8I	GATNNNNATC	1 cut(s)	543
BseBI	CCWGG	1 cut(s)	189
BseCI	ATCGAT	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	4 cut(s)	292, 387, 708, 720
BseJI	GATNNNNATC	1 cut(s)	543
BseLI	CCNNNNNNNGG	1 cut(s)	397
BseMI	GCAATG	2 cut(s)	33, 122
BseMII	CTCAG	3 cut(s)	210, 254, 446
BseNI	ACTGG	1 cut(s)	215
BseXI	GCAGC	4 cut(s)	25, 227, 516, 634
BseYI	CCCAGC	1 cut(s)	599
BshFI	GGCC	1 cut(s)	726
BshVI	ATCGAT	1 cut(s)	134
BsiSI	CCGG	1 cut(s)	513
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	1 cut(s)	397
BsmAI	GTCTC	1 cut(s)	72
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	1 cut(s)	726
Bsp143I	GATC	3 cut(s)	341, 426, 687
Bsp1720I	GCTNAGC	1 cut(s)	219
BspACI	CCGC	1 cut(s)	527
BspANI	GGCC	1 cut(s)	726
BspCNI	CTCAG	3 cut(s)	211, 255, 445
BspDI	ATCGAT	1 cut(s)	134
BspLI	GGNNCC	2 cut(s)	564, 734
BsrDI	GCAATG	2 cut(s)	33, 122
BsrFI	RCCGGY	1 cut(s)	512
BsrI	ACTGG	1 cut(s)	215
BssAI	RCCGGY	1 cut(s)	512
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	3 cut(s)	341, 426, 687
BssNAI	GTATAC	1 cut(s)	504
BssSI	CACGAG	1 cut(s)	69
BssT1I	CCWWGG	1 cut(s)	201
Bst1107I	GTATAC	1 cut(s)	504
Bst2BI	CACGAG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	2 cut(s)	66, 508
BstC8I	GCNNGC	1 cut(s)	514
BstDEI	CTNAG	3 cut(s)	219, 263, 432
BstF5I	GGATG	4 cut(s)	292, 387, 708, 720
BstKTI	GATC	3 cut(s)	344, 429, 690
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	3 cut(s)	341, 426, 687
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 466, 626
BstNI	CCWGG	1 cut(s)	189
BstNSI	RCATGY	1 cut(s)	460
BstSCI	CCNGG	1 cut(s)	187
BstSFI	CTRYAG	2 cut(s)	480, 621
BstV1I	GCAGC	4 cut(s)	25, 227, 516, 634
BstZ17I	GTATAC	1 cut(s)	504
Bsu15I	ATCGAT	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	726
BsuTUI	ATCGAT	1 cut(s)	134
BtrI	CACGTC	1 cut(s)	654
BtsCI	GGATG	4 cut(s)	292, 387, 708, 720
BtsIMutI	CAGTG	1 cut(s)	670
Cac8I	GCNNGC	1 cut(s)	514
CaiI	CAGNNNCTG	2 cut(s)	397, 647
Cfr10I	RCCGGY	1 cut(s)	512
Cfr13I	GGNCC	1 cut(s)	733
ClaI	ATCGAT	1 cut(s)	134
Csp6I	GTAC	1 cut(s)	454
CviAII	CATG	3 cut(s)	417, 457, 491
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	3 cut(s)	219, 263, 432
DpnI	GATC	3 cut(s)	343, 428, 689
DpnII	GATC	3 cut(s)	341, 426, 687
DraI	TTTAAA	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	201
Eco147I	AGGCCT	1 cut(s)	726
Eco47I	GGWCC	1 cut(s)	733
EcoO109I	RGGNCCY	1 cut(s)	733
EcoRII	CCWGG	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	3 cut(s)	420, 460, 494
FalI	AAGNNNNNCTT	2 cut(s)	453, 485
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	3 cut(s)	416, 456, 490
FblI	GTMKAC	2 cut(s)	503, 574
Fnu4HI	GCNGC	4 cut(s)	14, 216, 530, 648
FokI	GGATG	4 cut(s)	299, 394, 715, 727
Fsp4HI	GCNGC	4 cut(s)	14, 216, 530, 648
GluI	GCNGC	4 cut(s)	14, 216, 530, 648
GsaI	CCCAGC	1 cut(s)	603
HaeIII	GGCC	1 cut(s)	726
HapII	CCGG	1 cut(s)	513
Hin1II	CATG	3 cut(s)	420, 460, 494
HindIII	AAGCTT	1 cut(s)	693
HinfI	GANTC	2 cut(s)	161, 394
HpaII	CCGG	1 cut(s)	513
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	2 cut(s)	504, 575
Hpy188I	TCNGA	1 cut(s)	435
Hpy188III	TCNNGA	2 cut(s)	391, 536
Hpy8I	GTNNAC	2 cut(s)	504, 575
HpyAV	CCTTC	1 cut(s)	716
HpyCH4III	ACNGT	2 cut(s)	66, 508
HpyCH4IV	ACGT	1 cut(s)	653
HpyCH4V	TGCA	2 cut(s)	115, 460
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 466, 626
HpyF3I	CTNAG	3 cut(s)	219, 263, 432
HpySE526I	ACGT	1 cut(s)	653
Hsp92II	CATG	3 cut(s)	420, 460, 494
KroI	GCCGGC	1 cut(s)	512
KroNI	GCCGGC	1 cut(s)	514
Kzo9I	GATC	3 cut(s)	341, 426, 687
LmnI	GCTCC	1 cut(s)	23
Lsp1109I	GCAGC	4 cut(s)	25, 227, 516, 634
LweI	GCATC	1 cut(s)	232
MaeII	ACGT	1 cut(s)	653
MaeIII	GTNAC	2 cut(s)	127, 472
MalI	GATC	3 cut(s)	343, 428, 689
MboI	GATC	3 cut(s)	341, 426, 687
MluCI	AATT	3 cut(s)	274, 374, 518
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	1 cut(s)	547
MnlI	CCTC	6 cut(s)	199, 354, 543, 552, 575, 705
MroNI	GCCGGC	1 cut(s)	512
MseI	TTAA	2 cut(s)	60, 294
MslI	CAYNNNNRTG	1 cut(s)	136
MspA1I	CMGCKG	2 cut(s)	218, 529
MspI	CCGG	1 cut(s)	513
MspR9I	CCNGG	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	3 cut(s)	102, 466, 626
NaeI	GCCGGC	1 cut(s)	514
NdeII	GATC	3 cut(s)	341, 426, 687
NgoMIV	GCCGGC	1 cut(s)	512
NlaIII	CATG	3 cut(s)	420, 460, 494
NlaIV	GGNNCC	2 cut(s)	564, 734
NmuCI	GTSAC	1 cut(s)	127
NspI	RCATGY	1 cut(s)	460
PceI	AGGCCT	1 cut(s)	726
PdiI	GCCGGC	1 cut(s)	514
PfeI	GAWTC	1 cut(s)	394
PflMI	CCANNNNNTGG	1 cut(s)	397
PkrI	GCNGC	4 cut(s)	15, 217, 531, 649
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PpuMI	RGGWCCY	1 cut(s)	733
Psp5II	RGGWCCY	1 cut(s)	733
Psp6I	CCWGG	1 cut(s)	187
PspFI	CCCAGC	1 cut(s)	599
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	2 cut(s)	564, 734
PspPI	GGNCC	1 cut(s)	733
PspPPI	RGGWCCY	1 cut(s)	733
PstNI	CAGNNNCTG	2 cut(s)	397, 647
PvuII	CAGCTG	1 cut(s)	218
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
RseI	CAYNNNNRTG	1 cut(s)	136
SaqAI	TTAA	2 cut(s)	60, 294
SatI	GCNGC	4 cut(s)	14, 216, 530, 648
Sau3AI	GATC	3 cut(s)	341, 426, 687
Sau96I	GGNCC	1 cut(s)	733
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	189
SetI	ASST	8 cut(s)	220, 264, 294, 316, 568, 656, 697, 755
SfaNI	GCATC	1 cut(s)	232
SfcI	CTRYAG	2 cut(s)	480, 621
SinI	GGWCC	1 cut(s)	733
SmiMI	CAYNNNNRTG	1 cut(s)	136
SmlI	CTYRAG	1 cut(s)	534
SmoI	CTYRAG	1 cut(s)	534
Sse9I	AATT	3 cut(s)	274, 374, 518
SseBI	AGGCCT	1 cut(s)	726
SsiI	CCGC	1 cut(s)	527
SspI	AATATT	1 cut(s)	298
StuI	AGGCCT	1 cut(s)	726
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	2 cut(s)	66, 508
TaiI	ACGT	1 cut(s)	656
TaqI	TCGA	1 cut(s)	134
TaqII	GACCGA	1 cut(s)	344
TasI	AATT	3 cut(s)	274, 374, 518
TatI	WGTACW	1 cut(s)	453
TfiI	GAWTC	1 cut(s)	394
Tru1I	TTAA	2 cut(s)	60, 294
Tru9I	TTAA	2 cut(s)	60, 294
TscAI	CASTG	1 cut(s)	670
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	4 cut(s)	13, 215, 529, 647
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	2 cut(s)	44, 387
TspRI	CASTG	1 cut(s)	670
Van91I	CCANNNNNTGG	1 cut(s)	397
VpaK11BI	GGWCC	1 cut(s)	733
XapI	RAATTY	2 cut(s)	374, 518
XceI	RCATGY	1 cut(s)	460
XmiI	GTMKAC	2 cut(s)	503, 574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.